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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 428 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 105, 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 2 cut(s) | 155, 161 |
| AluI | AGCT | 2 cut(s) | 155, 161 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 285 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspS9I | GGNCC | 1 cut(s) | 285 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 92, 215, 418 |
| BciT130I | CCWGG | 2 cut(s) | 107, 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 2 cut(s) | 107, 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 285 |
| BmrFI | CCNGG | 2 cut(s) | 107, 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bse1I | ACTGG | 2 cut(s) | 24, 49 |
| Bse3DI | GCAATG | 1 cut(s) | 316 |
| BseBI | CCWGG | 2 cut(s) | 107, 131 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseMI | GCAATG | 1 cut(s) | 316 |
| BseNI | ACTGG | 2 cut(s) | 24, 49 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BseYI | CCCAGC | 1 cut(s) | 81 |
| BshFI | GGCC | 1 cut(s) | 287 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslFI | GGGAC | 1 cut(s) | 62 |
| BsmFI | GGGAC | 1 cut(s) | 62 |
| BsnI | GGCC | 1 cut(s) | 287 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| BspANI | GGCC | 1 cut(s) | 287 |
| BsrDI | GCAATG | 1 cut(s) | 316 |
| BsrI | ACTGG | 2 cut(s) | 24, 49 |
| Bst2UI | CCWGG | 2 cut(s) | 107, 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 271 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstNI | CCWGG | 2 cut(s) | 107, 131 |
| BstSCI | CCNGG | 2 cut(s) | 105, 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 287 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cfr13I | GGNCC | 1 cut(s) | 285 |
| CviAII | CATG | 2 cut(s) | 317, 348 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| Eam1104I | CTCTTC | 1 cut(s) | 271 |
| EarI | CTCTTC | 1 cut(s) | 271 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 2 cut(s) | 105, 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| FaeI | CATG | 2 cut(s) | 320, 351 |
| FaiI | YATR | 9 cut(s) | 228, 230, 249, 255, 257, 283, 318, 349, 354 |
| FaqI | GGGAC | 1 cut(s) | 62 |
| FatI | CATG | 2 cut(s) | 316, 347 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsaI | CCCAGC | 1 cut(s) | 85 |
| HaeIII | GGCC | 1 cut(s) | 287 |
| Hin1II | CATG | 2 cut(s) | 320, 351 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 220, 236, 320 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 4 cut(s) | 51, 71, 119, 332 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 2 cut(s) | 320, 351 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 2 cut(s) | 5, 343 |
| MboII | GAAGA | 4 cut(s) | 275, 278, 288, 308 |
| MluCI | AATT | 1 cut(s) | 428 |
| MlyI | GAGTC | 2 cut(s) | 214, 314 |
| MnlI | CCTC | 4 cut(s) | 142, 181, 298, 368 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 1 cut(s) | 414 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspR9I | CCNGG | 2 cut(s) | 107, 131 |
| MvaI | CCWGG | 2 cut(s) | 107, 131 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NlaIII | CATG | 2 cut(s) | 320, 351 |
| NmuCI | GTSAC | 1 cut(s) | 343 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 214, 314 |
| PpsI | GAGTC | 2 cut(s) | 214, 314 |
| Psp6I | CCWGG | 2 cut(s) | 105, 129 |
| PspFI | CCCAGC | 1 cut(s) | 81 |
| PspGI | CCWGG | 2 cut(s) | 105, 129 |
| PspPI | GGNCC | 1 cut(s) | 285 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SaqAI | TTAA | 1 cut(s) | 414 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau96I | GGNCC | 1 cut(s) | 285 |
| SchI | GAGTC | 2 cut(s) | 214, 314 |
| ScrFI | CCNGG | 2 cut(s) | 107, 131 |
| SetI | ASST | 5 cut(s) | 12, 96, 138, 157, 163 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 1 cut(s) | 428 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| StyD4I | CCNGG | 2 cut(s) | 105, 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 3 cut(s) | 96, 120, 294 |
| TasI | AATT | 1 cut(s) | 428 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| Tru1I | TTAA | 1 cut(s) | 414 |
| Tru9I | TTAA | 1 cut(s) | 414 |
| TseFI | GTSAC | 1 cut(s) | 343 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 343 |
| TspDTI | ATGAA | 2 cut(s) | 272, 276 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 2 cut(s) | 126, 338 |