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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 624 |
| AccB1I | GGYRCC | 1 cut(s) | 579 |
| AccII | CGCG | 2 cut(s) | 134, 564 |
| AccIII | TCCGGA | 1 cut(s) | 544 |
| AclWI | GGATC | 1 cut(s) | 4 |
| AcsI | RAATTY | 1 cut(s) | 323 |
| AcyI | GRCGYC | 1 cut(s) | 580 |
| AfaI | GTAC | 3 cut(s) | 7, 149, 279 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 157, 575 |
| AgsI | TTSAA | 2 cut(s) | 62, 271 |
| AjiI | CACGTC | 1 cut(s) | 31 |
| AjnI | CCWGG | 1 cut(s) | 582 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 183, 215 |
| AluBI | AGCT | 4 cut(s) | 50, 74, 457, 479 |
| AluI | AGCT | 4 cut(s) | 50, 74, 457, 479 |
| Alw26I | GTCTC | 1 cut(s) | 391 |
| AlwI | GGATC | 1 cut(s) | 4 |
| Aor13HI | TCCGGA | 1 cut(s) | 544 |
| ApoI | RAATTY | 1 cut(s) | 323 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 300 |
| AspLEI | GCGC | 3 cut(s) | 136, 566, 582 |
| AxyI | CCTNAGG | 1 cut(s) | 597 |
| BanI | GGYRCC | 1 cut(s) | 579 |
| BbsI | GAAGAC | 1 cut(s) | 168 |
| BccI | CCATC | 4 cut(s) | 110, 237, 313, 391 |
| BciT130I | CCWGG | 1 cut(s) | 584 |
| BcoDI | GTCTC | 1 cut(s) | 391 |
| BfaI | CTAG | 2 cut(s) | 432, 519 |
| BfoI | RGCGCY | 1 cut(s) | 583 |
| Bme1390I | CCNGG | 1 cut(s) | 584 |
| BmgBI | CACGTC | 1 cut(s) | 31 |
| BmiI | GGNNCC | 1 cut(s) | 581 |
| BmrFI | CCNGG | 1 cut(s) | 584 |
| BmsI | GCATC | 1 cut(s) | 447 |
| BpiI | GAAGAC | 1 cut(s) | 168 |
| BsaHI | GRCGYC | 1 cut(s) | 580 |
| BsaJI | CCNNGG | 1 cut(s) | 525 |
| BsaWI | WCCGGW | 1 cut(s) | 544 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 157, 575 |
| Bse21I | CCTNAGG | 1 cut(s) | 597 |
| BseAI | TCCGGA | 1 cut(s) | 544 |
| BseBI | CCWGG | 1 cut(s) | 584 |
| BseDI | CCNNGG | 1 cut(s) | 525 |
| BseGI | GGATG | 1 cut(s) | 105 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 157, 575 |
| BseRI | GAGGAG | 1 cut(s) | 30 |
| Bsh1236I | CGCG | 2 cut(s) | 134, 564 |
| BshNI | GGYRCC | 1 cut(s) | 579 |
| BsiSI | CCGG | 1 cut(s) | 545 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 157, 575 |
| BsmAI | GTCTC | 1 cut(s) | 391 |
| BsmBI | CGTCTC | 1 cut(s) | 391 |
| Bsp13I | TCCGGA | 1 cut(s) | 544 |
| Bsp143I | GATC | 1 cut(s) | 9 |
| BspEI | TCCGGA | 1 cut(s) | 544 |
| BspFNI | CGCG | 2 cut(s) | 134, 564 |
| BspHI | TCATGA | 3 cut(s) | 111, 451, 468 |
| BspLI | GGNNCC | 1 cut(s) | 581 |
| BspPI | GGATC | 1 cut(s) | 4 |
| BspT107I | GGYRCC | 1 cut(s) | 579 |
| BssECI | CCNNGG | 1 cut(s) | 525 |
| BssMI | GATC | 1 cut(s) | 9 |
| BssNI | GRCGYC | 1 cut(s) | 580 |
| Bst2UI | CCWGG | 1 cut(s) | 584 |
| BstACI | GRCGYC | 1 cut(s) | 580 |
| BstDEI | CTNAG | 3 cut(s) | 2, 232, 597 |
| BstDSI | CCRYGG | 1 cut(s) | 525 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 155, 573 |
| BstF5I | GGATG | 1 cut(s) | 105 |
| BstFNI | CGCG | 2 cut(s) | 134, 564 |
| BstH2I | RGCGCY | 1 cut(s) | 583 |
| BstHHI | GCGC | 3 cut(s) | 136, 566, 582 |
| BstKTI | GATC | 1 cut(s) | 12 |
| BstMAI | GTCTC | 1 cut(s) | 391 |
| BstMBI | GATC | 1 cut(s) | 9 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 62, 71, 92, 586 |
| BstNI | CCWGG | 1 cut(s) | 584 |
| BstSCI | CCNGG | 1 cut(s) | 582 |
| BstUI | CGCG | 2 cut(s) | 134, 564 |
| BstV2I | GAAGAC | 1 cut(s) | 168 |
| Bsu36I | CCTNAGG | 1 cut(s) | 597 |
| BtgI | CCRYGG | 1 cut(s) | 525 |
| BtrI | CACGTC | 1 cut(s) | 31 |
| BtsCI | GGATG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 1 cut(s) | 342 |
| CciI | TCATGA | 3 cut(s) | 111, 451, 468 |
| CfoI | GCGC | 3 cut(s) | 136, 566, 582 |
| CseI | GACGC | 1 cut(s) | 140 |
| Csp6I | GTAC | 3 cut(s) | 6, 148, 278 |
| CviAII | CATG | 5 cut(s) | 112, 124, 452, 469, 488 |
| CviQI | GTAC | 3 cut(s) | 6, 148, 278 |
| DdeI | CTNAG | 3 cut(s) | 2, 232, 597 |
| DinI | GGCGCC | 1 cut(s) | 581 |
| DpnI | GATC | 1 cut(s) | 11 |
| DpnII | GATC | 1 cut(s) | 9 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 624 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 624 |
| Eco81I | CCTNAGG | 1 cut(s) | 597 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 155, 573 |
| EcoRI | GAATTC | 1 cut(s) | 323 |
| EcoRII | CCWGG | 1 cut(s) | 582 |
| EgeI | GGCGCC | 1 cut(s) | 581 |
| EheI | GGCGCC | 1 cut(s) | 581 |
| Esp3I | CGTCTC | 1 cut(s) | 391 |
| FaeI | CATG | 5 cut(s) | 115, 127, 455, 472, 491 |
| FatI | CATG | 5 cut(s) | 111, 123, 451, 468, 487 |
| FokI | GGATG | 1 cut(s) | 92 |
| FspBI | CTAG | 2 cut(s) | 432, 519 |
| GlaI | GCGC | 3 cut(s) | 135, 565, 581 |
| HaeII | RGCGCY | 1 cut(s) | 583 |
| HapII | CCGG | 1 cut(s) | 545 |
| HgaI | GACGC | 1 cut(s) | 140 |
| HhaI | GCGC | 3 cut(s) | 136, 566, 582 |
| Hin1I | GRCGYC | 1 cut(s) | 580 |
| Hin1II | CATG | 5 cut(s) | 115, 127, 455, 472, 491 |
| Hin6I | GCGC | 3 cut(s) | 134, 564, 580 |
| HinP1I | GCGC | 3 cut(s) | 134, 564, 580 |
| HinfI | GANTC | 4 cut(s) | 215, 258, 465, 548 |
| HpaII | CCGG | 1 cut(s) | 545 |
| Hpy166II | GTNNAC | 1 cut(s) | 332 |
| Hpy188I | TCNGA | 3 cut(s) | 257, 295, 417 |
| Hpy188III | TCNNGA | 8 cut(s) | 26, 112, 227, 452, 469, 519, 545, 615 |
| Hpy8I | GTNNAC | 1 cut(s) | 332 |
| HpyAV | CCTTC | 1 cut(s) | 388 |
| HpyCH4IV | ACGT | 4 cut(s) | 30, 207, 474, 619 |
| HpyCH4V | TGCA | 1 cut(s) | 392 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 62, 71, 92, 586 |
| HpyF3I | CTNAG | 3 cut(s) | 2, 232, 597 |
| HpySE526I | ACGT | 4 cut(s) | 30, 207, 474, 619 |
| Hsp92I | GRCGYC | 1 cut(s) | 580 |
| Hsp92II | CATG | 5 cut(s) | 115, 127, 455, 472, 491 |
| HspAI | GCGC | 3 cut(s) | 134, 564, 580 |
| KasI | GGCGCC | 1 cut(s) | 579 |
| Kpn2I | TCCGGA | 1 cut(s) | 544 |
| Kzo9I | GATC | 1 cut(s) | 9 |
| LmnI | GCTCC | 2 cut(s) | 141, 586 |
| LpnPI | CCDG | 8 cut(s) | 11, 233, 240, 558, 569, 596, 600, 609 |
| LweI | GCATC | 1 cut(s) | 447 |
| MaeI | CTAG | 2 cut(s) | 432, 519 |
| MaeII | ACGT | 4 cut(s) | 30, 207, 474, 619 |
| MalI | GATC | 1 cut(s) | 11 |
| MboI | GATC | 1 cut(s) | 9 |
| MboII | GAAGA | 2 cut(s) | 173, 517 |
| MluCI | AATT | 4 cut(s) | 289, 323, 540, 553 |
| Mly113I | GGCGCC | 1 cut(s) | 580 |
| MlyI | GAGTC | 2 cut(s) | 474, 557 |
| MnlI | CCTC | 7 cut(s) | 51, 76, 119, 151, 161, 263, 569 |
| MroI | TCCGGA | 1 cut(s) | 544 |
| MroXI | GAANNNNTTC | 1 cut(s) | 300 |
| MslI | CAYNNNNRTG | 3 cut(s) | 110, 126, 500 |
| MspI | CCGG | 1 cut(s) | 545 |
| MspR9I | CCNGG | 1 cut(s) | 584 |
| MvaI | CCWGG | 1 cut(s) | 584 |
| MvnI | CGCG | 2 cut(s) | 134, 564 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 62, 71, 92, 586 |
| NarI | GGCGCC | 1 cut(s) | 580 |
| NdeII | GATC | 1 cut(s) | 9 |
| NlaIII | CATG | 5 cut(s) | 115, 127, 455, 472, 491 |
| NlaIV | GGNNCC | 1 cut(s) | 581 |
| PagI | TCATGA | 3 cut(s) | 111, 451, 468 |
| PdmI | GAANNNNTTC | 1 cut(s) | 300 |
| PfeI | GAWTC | 2 cut(s) | 215, 258 |
| PleI | GAGTC | 2 cut(s) | 473, 556 |
| PluTI | GGCGCC | 1 cut(s) | 583 |
| PpsI | GAGTC | 2 cut(s) | 473, 556 |
| Psp6I | CCWGG | 1 cut(s) | 582 |
| PspGI | CCWGG | 1 cut(s) | 582 |
| PspN4I | GGNNCC | 1 cut(s) | 581 |
| RsaI | GTAC | 3 cut(s) | 7, 149, 279 |
| RsaNI | GTAC | 3 cut(s) | 6, 148, 278 |
| RseI | CAYNNNNRTG | 3 cut(s) | 110, 126, 500 |
| Sau3AI | GATC | 1 cut(s) | 9 |
| SchI | GAGTC | 2 cut(s) | 474, 557 |
| ScrFI | CCNGG | 1 cut(s) | 584 |
| SfaNI | GCATC | 1 cut(s) | 447 |
| SfoI | GGCGCC | 1 cut(s) | 581 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 110, 126, 500 |
| Sse9I | AATT | 4 cut(s) | 289, 323, 540, 553 |
| SspDI | GGCGCC | 1 cut(s) | 579 |
| SspMI | CTAG | 2 cut(s) | 432, 519 |
| StyD4I | CCNGG | 1 cut(s) | 582 |
| TaiI | ACGT | 4 cut(s) | 33, 210, 477, 622 |
| TaqI | TCGA | 1 cut(s) | 189 |
| TasI | AATT | 4 cut(s) | 289, 323, 540, 553 |
| TatI | WGTACW | 1 cut(s) | 277 |
| TfiI | GAWTC | 2 cut(s) | 215, 258 |
| TscAI | CASTG | 1 cut(s) | 349 |
| TspDTI | ATGAA | 4 cut(s) | 105, 140, 440, 485 |
| TspGWI | ACGGA | 1 cut(s) | 200 |
| TspRI | CASTG | 1 cut(s) | 349 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 155, 573 |
| XapI | RAATTY | 1 cut(s) | 323 |
| XbaI | TCTAGA | 1 cut(s) | 518 |
| XmnI | GAANNNNTTC | 1 cut(s) | 300 |
| XspI | CTAG | 2 cut(s) | 432, 519 |