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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 297 |
| AccB1I | GGYRCC | 2 cut(s) | 473, 887 |
| AccI | GTMKAC | 1 cut(s) | 721 |
| AccII | CGCG | 4 cut(s) | 143, 1176, 1186, 1191 |
| AccIII | TCCGGA | 1 cut(s) | 553 |
| AciI | CCGC | 6 cut(s) | 265, 804, 1123, 1157, 1179, 1189 |
| AcoI | YGGCCR | 2 cut(s) | 340, 928 |
| AcuI | CTGAAG | 1 cut(s) | 736 |
| AcyI | GRCGYC | 3 cut(s) | 474, 876, 906 |
| AfeI | AGCGCT | 1 cut(s) | 1009 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 166 |
| AflII | CTTAAG | 1 cut(s) | 14 |
| AgsI | TTSAA | 3 cut(s) | 280, 414, 623 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 599 |
| AjnI | CCWGG | 2 cut(s) | 697, 908 |
| Alw26I | GTCTC | 2 cut(s) | 327, 400 |
| Aor13HI | TCCGGA | 1 cut(s) | 553 |
| Aor51HI | AGCGCT | 1 cut(s) | 1009 |
| AoxI | GGCC | 4 cut(s) | 340, 928, 1023, 1056 |
| ApeKI | GCWGC | 4 cut(s) | 202, 815, 830, 854 |
| AspLEI | GCGC | 7 cut(s) | 6, 145, 476, 1010, 1178, 1188, 1193 |
| AspS9I | GGNCC | 4 cut(s) | 1024, 1057, 1100, 1151 |
| AvaII | GGWCC | 2 cut(s) | 1100, 1151 |
| BalI | TGGCCA | 2 cut(s) | 342, 930 |
| BanI | GGYRCC | 2 cut(s) | 473, 887 |
| BauI | CACGAG | 1 cut(s) | 924 |
| BbsI | GAAGAC | 2 cut(s) | 177, 380 |
| BbvCI | CCTCAGC | 1 cut(s) | 1142 |
| BbvI | GCAGC | 4 cut(s) | 214, 827, 841, 842 |
| BccI | CCATC | 5 cut(s) | 17, 47, 246, 887, 967 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 683, 717, 1093, 1127 |
| BciT130I | CCWGG | 2 cut(s) | 699, 910 |
| BcoDI | GTCTC | 2 cut(s) | 327, 400 |
| BfaI | CTAG | 7 cut(s) | 32, 51, 528, 588, 689, 789, 1062 |
| BfmI | CTRYAG | 1 cut(s) | 69 |
| BfoI | RGCGCY | 2 cut(s) | 477, 1011 |
| BfrI | CTTAAG | 1 cut(s) | 14 |
| BisI | GCNGC | 6 cut(s) | 203, 816, 831, 855, 1179, 1189 |
| BlsI | GCNGC | 6 cut(s) | 204, 817, 832, 856, 1180, 1190 |
| Bme1390I | CCNGG | 2 cut(s) | 699, 910 |
| Bme18I | GGWCC | 2 cut(s) | 1100, 1151 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 599 |
| BmgT120I | GGNCC | 4 cut(s) | 1024, 1057, 1100, 1151 |
| BmiI | GGNNCC | 4 cut(s) | 475, 845, 889, 1059 |
| BmrFI | CCNGG | 2 cut(s) | 699, 910 |
| BmsI | GCATC | 5 cut(s) | 702, 703, 1155, 1198, 1211 |
| BpiI | GAAGAC | 2 cut(s) | 177, 380 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 633, 665 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1142 |
| BpuEI | CTTGAG | 1 cut(s) | 218 |
| BsaHI | GRCGYC | 3 cut(s) | 474, 876, 906 |
| BsaJI | CCNNGG | 2 cut(s) | 534, 909 |
| BsaWI | WCCGGW | 1 cut(s) | 553 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 969, 999 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 166 |
| Bse3DI | GCAATG | 1 cut(s) | 220 |
| BseAI | TCCGGA | 1 cut(s) | 553 |
| BseBI | CCWGG | 2 cut(s) | 699, 910 |
| BseDI | CCNNGG | 2 cut(s) | 534, 909 |
| BseGI | GGATG | 3 cut(s) | 39, 694, 742 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BseMI | GCAATG | 1 cut(s) | 220 |
| BseMII | CTCAG | 2 cut(s) | 1034, 1156 |
| BseRI | GAGGAG | 1 cut(s) | 912 |
| BseXI | GCAGC | 4 cut(s) | 214, 827, 841, 842 |
| BseYI | CCCAGC | 1 cut(s) | 1220 |
| Bsh1236I | CGCG | 4 cut(s) | 143, 1176, 1186, 1191 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1165 |
| BshFI | GGCC | 4 cut(s) | 342, 930, 1025, 1058 |
| BshNI | GGYRCC | 2 cut(s) | 473, 887 |
| BsiEI | CGRYCG | 1 cut(s) | 1165 |
| BsiSI | CCGG | 1 cut(s) | 554 |
| BslFI | GGGAC | 1 cut(s) | 848 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BsmAI | GTCTC | 2 cut(s) | 327, 400 |
| BsmBI | CGTCTC | 1 cut(s) | 400 |
| BsmFI | GGGAC | 1 cut(s) | 848 |
| BsmI | GAATGC | 1 cut(s) | 442 |
| BsnI | GGCC | 4 cut(s) | 342, 930, 1025, 1058 |
| Bsp13I | TCCGGA | 1 cut(s) | 553 |
| Bsp143I | GATC | 2 cut(s) | 366, 1162 |
| BspACI | CCGC | 6 cut(s) | 265, 804, 1123, 1157, 1179, 1189 |
| BspANI | GGCC | 4 cut(s) | 342, 930, 1025, 1058 |
| BspCNI | CTCAG | 2 cut(s) | 1033, 1155 |
| BspEI | TCCGGA | 1 cut(s) | 553 |
| BspFNI | CGCG | 4 cut(s) | 143, 1176, 1186, 1191 |
| BspHI | TCATGA | 2 cut(s) | 120, 460 |
| BspLI | GGNNCC | 4 cut(s) | 475, 845, 889, 1059 |
| BspT107I | GGYRCC | 2 cut(s) | 473, 887 |
| BspTI | CTTAAG | 1 cut(s) | 14 |
| BsrDI | GCAATG | 1 cut(s) | 220 |
| BssECI | CCNNGG | 2 cut(s) | 534, 909 |
| BssMI | GATC | 2 cut(s) | 366, 1162 |
| BssNAI | GTATAC | 1 cut(s) | 722 |
| BssNI | GRCGYC | 3 cut(s) | 474, 876, 906 |
| BssSI | CACGAG | 1 cut(s) | 924 |
| Bst1107I | GTATAC | 1 cut(s) | 722 |
| Bst2BI | CACGAG | 1 cut(s) | 924 |
| Bst2UI | CCWGG | 2 cut(s) | 699, 910 |
| Bst4CI | ACNGT | 1 cut(s) | 887 |
| BstACI | GRCGYC | 3 cut(s) | 474, 876, 906 |
| BstAFI | CTTAAG | 1 cut(s) | 14 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 812, 1208 |
| BstC8I | GCNNGC | 1 cut(s) | 78 |
| BstDEI | CTNAG | 5 cut(s) | 543, 794, 1020, 1053, 1142 |
| BstDSI | CCRYGG | 1 cut(s) | 534 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 164 |
| BstF5I | GGATG | 3 cut(s) | 39, 694, 742 |
| BstFNI | CGCG | 4 cut(s) | 143, 1176, 1186, 1191 |
| BstH2I | RGCGCY | 2 cut(s) | 477, 1011 |
| BstHHI | GCGC | 7 cut(s) | 6, 145, 476, 1010, 1178, 1188, 1193 |
| BstKTI | GATC | 2 cut(s) | 369, 1165 |
| BstMAI | GTCTC | 2 cut(s) | 327, 400 |
| BstMBI | GATC | 2 cut(s) | 366, 1162 |
| BstMCI | CGRYCG | 1 cut(s) | 1165 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 812, 914, 1055, 1071, 1173, 1199, 1208, 1217 |
| BstNI | CCWGG | 2 cut(s) | 699, 910 |
| BstNSI | RCATGY | 1 cut(s) | 1114 |
| BstSCI | CCNGG | 2 cut(s) | 697, 908 |
| BstSFI | CTRYAG | 1 cut(s) | 69 |
| BstUI | CGCG | 4 cut(s) | 143, 1176, 1186, 1191 |
| BstV1I | GCAGC | 4 cut(s) | 214, 827, 841, 842 |
| BstV2I | GAAGAC | 2 cut(s) | 177, 380 |
| BstZ17I | GTATAC | 1 cut(s) | 722 |
| BsuRI | GGCC | 4 cut(s) | 342, 930, 1025, 1058 |
| BtgI | CCRYGG | 1 cut(s) | 534 |
| BtgZI | GCGATG | 1 cut(s) | 265 |
| BtsCI | GGATG | 3 cut(s) | 39, 694, 742 |
| Cac8I | GCNNGC | 1 cut(s) | 78 |
| CciI | TCATGA | 2 cut(s) | 120, 460 |
| CfoI | GCGC | 7 cut(s) | 6, 145, 476, 1010, 1178, 1188, 1193 |
| Cfr13I | GGNCC | 4 cut(s) | 1024, 1057, 1100, 1151 |
| CseI | GACGC | 4 cut(s) | 149, 884, 914, 1182 |
| DdeI | CTNAG | 5 cut(s) | 543, 794, 1020, 1053, 1142 |
| DinI | GGCGCC | 1 cut(s) | 475 |
| DpnI | GATC | 2 cut(s) | 368, 1164 |
| DpnII | GATC | 2 cut(s) | 366, 1162 |
| DriI | GACNNNNNGTC | 1 cut(s) | 599 |
| EaeI | YGGCCR | 2 cut(s) | 340, 928 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 599 |
| Eco47I | GGWCC | 2 cut(s) | 1100, 1151 |
| Eco47III | AGCGCT | 1 cut(s) | 1009 |
| Eco57I | CTGAAG | 1 cut(s) | 736 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 164 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1057 |
| EcoRII | CCWGG | 2 cut(s) | 697, 908 |
| EgeI | GGCGCC | 1 cut(s) | 475 |
| EheI | GGCGCC | 1 cut(s) | 475 |
| Esp3I | CGTCTC | 1 cut(s) | 400 |
| FaqI | GGGAC | 1 cut(s) | 848 |
| FblI | GTMKAC | 1 cut(s) | 721 |
| Fnu4HI | GCNGC | 6 cut(s) | 203, 816, 831, 855, 1179, 1189 |
| FokI | GGATG | 3 cut(s) | 26, 681, 729 |
| Fsp4HI | GCNGC | 6 cut(s) | 203, 816, 831, 855, 1179, 1189 |
| FspBI | CTAG | 7 cut(s) | 32, 51, 528, 588, 689, 789, 1062 |
| GlaI | GCGC | 7 cut(s) | 5, 144, 475, 1009, 1177, 1187, 1192 |
| GluI | GCNGC | 6 cut(s) | 203, 816, 831, 855, 1179, 1189 |
| GsaI | CCCAGC | 1 cut(s) | 1224 |
| HaeII | RGCGCY | 2 cut(s) | 477, 1011 |
| HaeIII | GGCC | 4 cut(s) | 342, 930, 1025, 1058 |
| HapII | CCGG | 1 cut(s) | 554 |
| HgaI | GACGC | 4 cut(s) | 149, 884, 914, 1182 |
| HhaI | GCGC | 7 cut(s) | 6, 145, 476, 1010, 1178, 1188, 1193 |
| Hin1I | GRCGYC | 3 cut(s) | 474, 876, 906 |
| Hin6I | GCGC | 7 cut(s) | 4, 143, 474, 1008, 1176, 1186, 1191 |
| HinP1I | GCGC | 7 cut(s) | 4, 143, 474, 1008, 1176, 1186, 1191 |
| HindIII | AAGCTT | 1 cut(s) | 572 |
| HinfI | GANTC | 7 cut(s) | 224, 376, 557, 623, 656, 772, 784 |
| HpaII | CCGG | 1 cut(s) | 554 |
| Hpy166II | GTNNAC | 2 cut(s) | 593, 722 |
| Hpy188I | TCNGA | 7 cut(s) | 57, 304, 426, 755, 1151, 1207, 1216 |
| Hpy188III | TCNNGA | 9 cut(s) | 32, 121, 221, 236, 370, 461, 554, 704, 1090 |
| Hpy8I | GTNNAC | 2 cut(s) | 593, 722 |
| Hpy99I | CGWCG | 1 cut(s) | 1176 |
| HpyAV | CCTTC | 1 cut(s) | 397 |
| HpyCH4III | ACNGT | 1 cut(s) | 887 |
| HpyCH4IV | ACGT | 2 cut(s) | 60, 483 |
| HpyCH4V | TGCA | 5 cut(s) | 440, 815, 830, 1074, 1114 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 812, 914, 1055, 1071, 1173, 1199, 1208, 1217 |
| HpyF3I | CTNAG | 5 cut(s) | 543, 794, 1020, 1053, 1142 |
| HpySE526I | ACGT | 2 cut(s) | 60, 483 |
| Hsp92I | GRCGYC | 3 cut(s) | 474, 876, 906 |
| HspAI | GCGC | 7 cut(s) | 4, 143, 474, 1008, 1176, 1186, 1191 |
| KasI | GGCGCC | 1 cut(s) | 473 |
| Kpn2I | TCCGGA | 1 cut(s) | 553 |
| Kzo9I | GATC | 2 cut(s) | 366, 1162 |
| LmnI | GCTCC | 2 cut(s) | 150, 843 |
| Lsp1109I | GCAGC | 4 cut(s) | 214, 827, 841, 842 |
| LweI | GCATC | 5 cut(s) | 702, 703, 1155, 1198, 1211 |
| MaeI | CTAG | 7 cut(s) | 32, 51, 528, 588, 689, 789, 1062 |
| MaeII | ACGT | 2 cut(s) | 60, 483 |
| MaeIII | GTNAC | 4 cut(s) | 221, 601, 985, 1133 |
| MalI | GATC | 2 cut(s) | 368, 1164 |
| MboI | GATC | 2 cut(s) | 366, 1162 |
| MboII | GAAGA | 6 cut(s) | 182, 385, 526, 742, 774, 1078 |
| MfeI | CAATTG | 2 cut(s) | 618, 810 |
| MlsI | TGGCCA | 2 cut(s) | 342, 930 |
| MluCI | AATT | 8 cut(s) | 114, 418, 609, 618, 779, 810, 949, 1094 |
| MluNI | TGGCCA | 2 cut(s) | 342, 930 |
| Mly113I | GGCGCC | 1 cut(s) | 474 |
| MlyI | GAGTC | 3 cut(s) | 218, 370, 566 |
| MnlI | CCTC | 6 cut(s) | 160, 170, 272, 928, 933, 1151 |
| Mox20I | TGGCCA | 2 cut(s) | 342, 930 |
| MroI | TCCGGA | 1 cut(s) | 553 |
| MscI | TGGCCA | 2 cut(s) | 342, 930 |
| MseI | TTAA | 1 cut(s) | 15 |
| MslI | CAYNNNNRTG | 2 cut(s) | 135, 900 |
| Msp20I | TGGCCA | 2 cut(s) | 342, 930 |
| MspCI | CTTAAG | 1 cut(s) | 14 |
| MspI | CCGG | 1 cut(s) | 554 |
| MspR9I | CCNGG | 2 cut(s) | 699, 910 |
| MteI | GCGCNGCGC | 1 cut(s) | 1189 |
| MunI | CAATTG | 2 cut(s) | 618, 810 |
| Mva1269I | GAATGC | 1 cut(s) | 442 |
| MvaI | CCWGG | 2 cut(s) | 699, 910 |
| MvnI | CGCG | 4 cut(s) | 143, 1176, 1186, 1191 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 812, 914, 1055, 1071, 1173, 1199, 1208, 1217 |
| NarI | GGCGCC | 1 cut(s) | 474 |
| NdeII | GATC | 2 cut(s) | 366, 1162 |
| NlaIV | GGNNCC | 4 cut(s) | 475, 845, 889, 1059 |
| NmuCI | GTSAC | 3 cut(s) | 221, 601, 985 |
| NspI | RCATGY | 1 cut(s) | 1114 |
| PagI | TCATGA | 2 cut(s) | 120, 460 |
| PctI | GAATGC | 1 cut(s) | 442 |
| PfeI | GAWTC | 4 cut(s) | 623, 656, 772, 784 |
| PkrI | GCNGC | 6 cut(s) | 204, 817, 832, 856, 1180, 1190 |
| Ple19I | CGATCG | 1 cut(s) | 1165 |
| PleI | GAGTC | 3 cut(s) | 218, 370, 565 |
| PluTI | GGCGCC | 1 cut(s) | 477 |
| PpsI | GAGTC | 3 cut(s) | 218, 370, 565 |
| PsiI | TTATAA | 1 cut(s) | 297 |
| Psp6I | CCWGG | 2 cut(s) | 697, 908 |
| PspFI | CCCAGC | 1 cut(s) | 1220 |
| PspGI | CCWGG | 2 cut(s) | 697, 908 |
| PspN4I | GGNNCC | 4 cut(s) | 475, 845, 889, 1059 |
| PspPI | GGNCC | 4 cut(s) | 1024, 1057, 1100, 1151 |
| PvuI | CGATCG | 1 cut(s) | 1165 |
| RseI | CAYNNNNRTG | 2 cut(s) | 135, 900 |
| SaqAI | TTAA | 1 cut(s) | 15 |
| SatI | GCNGC | 6 cut(s) | 203, 816, 831, 855, 1179, 1189 |
| Sau3AI | GATC | 2 cut(s) | 366, 1162 |
| Sau96I | GGNCC | 4 cut(s) | 1024, 1057, 1100, 1151 |
| SchI | GAGTC | 3 cut(s) | 218, 370, 566 |
| ScrFI | CCNGG | 2 cut(s) | 699, 910 |
| SfaNI | GCATC | 5 cut(s) | 702, 703, 1155, 1198, 1211 |
| SfcI | CTRYAG | 1 cut(s) | 69 |
| SfoI | GGCGCC | 1 cut(s) | 475 |
| SinI | GGWCC | 2 cut(s) | 1100, 1151 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 135, 900 |
| SmlI | CTYRAG | 2 cut(s) | 14, 197 |
| SmoI | CTYRAG | 2 cut(s) | 14, 197 |
| Sse9I | AATT | 8 cut(s) | 114, 418, 609, 618, 779, 810, 949, 1094 |
| SsiI | CCGC | 6 cut(s) | 265, 804, 1123, 1157, 1179, 1189 |
| SspDI | GGCGCC | 1 cut(s) | 473 |
| SspI | AATATT | 2 cut(s) | 363, 505 |
| SspMI | CTAG | 7 cut(s) | 32, 51, 528, 588, 689, 789, 1062 |
| StyD4I | CCNGG | 2 cut(s) | 697, 908 |
| TaaI | ACNGT | 1 cut(s) | 887 |
| TaiI | ACGT | 2 cut(s) | 63, 486 |
| TaqI | TCGA | 1 cut(s) | 369 |
| TaqII | GACCGA | 2 cut(s) | 699, 1117 |
| TasI | AATT | 8 cut(s) | 114, 418, 609, 618, 779, 810, 949, 1094 |
| TauI | GCSGC | 2 cut(s) | 1181, 1191 |
| TfiI | GAWTC | 4 cut(s) | 623, 656, 772, 784 |
| Tru1I | TTAA | 1 cut(s) | 15 |
| Tru9I | TTAA | 1 cut(s) | 15 |
| TseFI | GTSAC | 3 cut(s) | 221, 601, 985 |
| TseI | GCWGC | 4 cut(s) | 202, 815, 830, 854 |
| Tsp45I | GTSAC | 3 cut(s) | 221, 601, 985 |
| TspDTI | ATGAA | 6 cut(s) | 149, 449, 494, 527, 648, 944 |
| TspGWI | ACGGA | 1 cut(s) | 1028 |
| Vha464I | CTTAAG | 1 cut(s) | 14 |
| VpaK11BI | GGWCC | 2 cut(s) | 1100, 1151 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 164 |
| XbaI | TCTAGA | 1 cut(s) | 31 |
| XceI | RCATGY | 1 cut(s) | 1114 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 183 |
| XmiI | GTMKAC | 1 cut(s) | 721 |
| XspI | CTAG | 7 cut(s) | 32, 51, 528, 588, 689, 789, 1062 |