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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 533 |
| AccB1I | GGYRCC | 3 cut(s) | 488, 599, 680 |
| AccII | CGCG | 1 cut(s) | 473 |
| AccIII | TCCGGA | 1 cut(s) | 453 |
| AciI | CCGC | 5 cut(s) | 33, 36, 58, 83, 603 |
| AclWI | GGATC | 2 cut(s) | 118, 425 |
| AcyI | GRCGYC | 3 cut(s) | 489, 651, 681 |
| AfaI | GTAC | 1 cut(s) | 290 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 625, 629 |
| AgsI | TTSAA | 3 cut(s) | 415, 428, 721 |
| AjnI | CCWGG | 1 cut(s) | 690 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 327, 359 |
| AluBI | AGCT | 3 cut(s) | 8, 197, 203 |
| AluI | AGCT | 3 cut(s) | 8, 197, 203 |
| Alw26I | GTCTC | 2 cut(s) | 19, 331 |
| AlwI | GGATC | 2 cut(s) | 118, 425 |
| Aor13HI | TCCGGA | 1 cut(s) | 453 |
| ApeKI | GCWGC | 7 cut(s) | 8, 38, 68, 77, 85, 221, 700 |
| AspA2I | CCTAGG | 1 cut(s) | 623 |
| AspLEI | GCGC | 3 cut(s) | 475, 491, 683 |
| AsuHPI | GGTGA | 6 cut(s) | 6, 22, 574, 686, 699, 706 |
| AsuNHI | GCTAGC | 1 cut(s) | 4 |
| AvrII | CCTAGG | 1 cut(s) | 623 |
| BaeGI | GKGCMC | 1 cut(s) | 602 |
| BanI | GGYRCC | 3 cut(s) | 488, 599, 680 |
| BbsI | GAAGAC | 1 cut(s) | 312 |
| BbvI | GCAGC | 6 cut(s) | 25, 55, 72, 89, 233, 687 |
| BccI | CCATC | 4 cut(s) | 257, 381, 671, 675 |
| BciT130I | CCWGG | 1 cut(s) | 692 |
| BcoDI | GTCTC | 2 cut(s) | 19, 331 |
| BfaI | CTAG | 5 cut(s) | 5, 173, 377, 533, 624 |
| BfmI | CTRYAG | 2 cut(s) | 47, 75 |
| BfoI | RGCGCY | 2 cut(s) | 492, 684 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 230 |
| BisI | GCNGC | 9 cut(s) | 9, 36, 39, 58, 69, 78, 86, 222, 701 |
| BlnI | CCTAGG | 1 cut(s) | 623 |
| BlpI | GCTNAGC | 1 cut(s) | 392 |
| BlsI | GCNGC | 9 cut(s) | 10, 37, 40, 59, 70, 79, 87, 223, 702 |
| Bme1390I | CCNGG | 1 cut(s) | 692 |
| BmiI | GGNNCC | 3 cut(s) | 490, 601, 682 |
| BmrFI | CCNGG | 1 cut(s) | 692 |
| BmsI | GCATC | 2 cut(s) | 108, 687 |
| BmtI | GCTAGC | 1 cut(s) | 8 |
| BpiI | GAAGAC | 1 cut(s) | 312 |
| BpmI | CTGGAG | 1 cut(s) | 269 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 392 |
| BpuEI | CTTGAG | 1 cut(s) | 183 |
| BsaHI | GRCGYC | 3 cut(s) | 489, 651, 681 |
| BsaI | GGTCTC | 1 cut(s) | 331 |
| BsaJI | CCNNGG | 4 cut(s) | 434, 623, 654, 690 |
| BsaWI | WCCGGW | 1 cut(s) | 453 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 344, 374 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 625, 629 |
| Bse1I | ACTGG | 1 cut(s) | 286 |
| Bse3DI | GCAATG | 1 cut(s) | 94 |
| BseAI | TCCGGA | 1 cut(s) | 453 |
| BseBI | CCWGG | 1 cut(s) | 692 |
| BseDI | CCNNGG | 4 cut(s) | 434, 623, 654, 690 |
| BseGI | GGATG | 3 cut(s) | 99, 252, 280 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 625, 629 |
| BseMI | GCAATG | 1 cut(s) | 94 |
| BseNI | ACTGG | 1 cut(s) | 286 |
| BseRI | GAGGAG | 1 cut(s) | 98 |
| BseSI | GKGCMC | 1 cut(s) | 602 |
| BseXI | GCAGC | 6 cut(s) | 25, 55, 72, 89, 233, 687 |
| Bsh1236I | CGCG | 1 cut(s) | 473 |
| BshNI | GGYRCC | 3 cut(s) | 488, 599, 680 |
| BsiSI | CCGG | 1 cut(s) | 454 |
| BslFI | GGGAC | 1 cut(s) | 623 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 625, 629 |
| BsmAI | GTCTC | 2 cut(s) | 19, 331 |
| BsmFI | GGGAC | 1 cut(s) | 623 |
| Bso31I | GGTCTC | 1 cut(s) | 331 |
| Bsp1286I | GDGCHC | 1 cut(s) | 602 |
| Bsp13I | TCCGGA | 1 cut(s) | 453 |
| Bsp143I | GATC | 2 cut(s) | 123, 430 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 392 |
| Bsp19I | CCATGG | 1 cut(s) | 654 |
| BspACI | CCGC | 5 cut(s) | 33, 36, 58, 83, 603 |
| BspEI | TCCGGA | 1 cut(s) | 453 |
| BspFNI | CGCG | 1 cut(s) | 473 |
| BspLI | GGNNCC | 3 cut(s) | 490, 601, 682 |
| BspMAI | CTGCAG | 1 cut(s) | 79 |
| BspOI | GCTAGC | 1 cut(s) | 8 |
| BspPI | GGATC | 2 cut(s) | 118, 425 |
| BspT107I | GGYRCC | 3 cut(s) | 488, 599, 680 |
| BspTNI | GGTCTC | 1 cut(s) | 331 |
| BsrDI | GCAATG | 1 cut(s) | 94 |
| BsrI | ACTGG | 1 cut(s) | 286 |
| BssECI | CCNNGG | 4 cut(s) | 434, 623, 654, 690 |
| BssMI | GATC | 2 cut(s) | 123, 430 |
| BssNI | GRCGYC | 3 cut(s) | 489, 651, 681 |
| BssT1I | CCWWGG | 2 cut(s) | 623, 654 |
| Bst2UI | CCWGG | 1 cut(s) | 692 |
| Bst4CI | ACNGT | 4 cut(s) | 21, 356, 469, 637 |
| Bst6I | CTCTTC | 1 cut(s) | 588 |
| BstACI | GRCGYC | 3 cut(s) | 489, 651, 681 |
| BstC8I | GCNNGC | 5 cut(s) | 6, 90, 159, 195, 631 |
| BstDEI | CTNAG | 3 cut(s) | 226, 392, 511 |
| BstDSI | CCRYGG | 2 cut(s) | 434, 654 |
| BstF5I | GGATG | 3 cut(s) | 99, 252, 280 |
| BstFNI | CGCG | 1 cut(s) | 473 |
| BstH2I | RGCGCY | 2 cut(s) | 492, 684 |
| BstHHI | GCGC | 3 cut(s) | 475, 491, 683 |
| BstKTI | GATC | 2 cut(s) | 126, 433 |
| BstMAI | GTCTC | 2 cut(s) | 19, 331 |
| BstMBI | GATC | 2 cut(s) | 123, 430 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 74, 77, 209, 218, 230, 239, 495 |
| BstNI | CCWGG | 1 cut(s) | 692 |
| BstNSI | RCATGY | 2 cut(s) | 92, 181 |
| BstSCI | CCNGG | 1 cut(s) | 690 |
| BstSFI | CTRYAG | 2 cut(s) | 47, 75 |
| BstSLI | GKGCMC | 1 cut(s) | 602 |
| BstUI | CGCG | 1 cut(s) | 473 |
| BstV1I | GCAGC | 6 cut(s) | 25, 55, 72, 89, 233, 687 |
| BstV2I | GAAGAC | 1 cut(s) | 312 |
| BstX2I | RGATCY | 1 cut(s) | 430 |
| BstYI | RGATCY | 1 cut(s) | 430 |
| BtgI | CCRYGG | 2 cut(s) | 434, 654 |
| BtsCI | GGATG | 3 cut(s) | 99, 252, 280 |
| Cac8I | GCNNGC | 5 cut(s) | 6, 90, 159, 195, 631 |
| CfoI | GCGC | 3 cut(s) | 475, 491, 683 |
| CseI | GACGC | 1 cut(s) | 659 |
| Csp6I | GTAC | 1 cut(s) | 289 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 416, 451 |
| CviAII | CATG | 5 cut(s) | 89, 178, 647, 655, 671 |
| CviQI | GTAC | 1 cut(s) | 289 |
| DdeI | CTNAG | 3 cut(s) | 226, 392, 511 |
| DinI | GGCGCC | 2 cut(s) | 490, 682 |
| DpnI | GATC | 2 cut(s) | 125, 432 |
| DpnII | GATC | 2 cut(s) | 123, 430 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 533 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 533 |
| Eam1104I | CTCTTC | 1 cut(s) | 588 |
| EarI | CTCTTC | 1 cut(s) | 588 |
| Eco130I | CCWWGG | 2 cut(s) | 623, 654 |
| Eco31I | GGTCTC | 1 cut(s) | 331 |
| EcoRII | CCWGG | 1 cut(s) | 690 |
| EcoT14I | CCWWGG | 2 cut(s) | 623, 654 |
| EgeI | GGCGCC | 2 cut(s) | 490, 682 |
| EheI | GGCGCC | 2 cut(s) | 490, 682 |
| ErhI | CCWWGG | 2 cut(s) | 623, 654 |
| FaeI | CATG | 5 cut(s) | 92, 181, 650, 658, 674 |
| FaqI | GGGAC | 1 cut(s) | 623 |
| FatI | CATG | 5 cut(s) | 88, 177, 646, 654, 670 |
| FauNDI | CATATG | 1 cut(s) | 270 |
| Fnu4HI | GCNGC | 9 cut(s) | 9, 36, 39, 58, 69, 78, 86, 222, 701 |
| FokI | GGATG | 3 cut(s) | 86, 239, 287 |
| Fsp4HI | GCNGC | 9 cut(s) | 9, 36, 39, 58, 69, 78, 86, 222, 701 |
| FspBI | CTAG | 5 cut(s) | 5, 173, 377, 533, 624 |
| GlaI | GCGC | 3 cut(s) | 474, 490, 682 |
| GluI | GCNGC | 9 cut(s) | 9, 36, 39, 58, 69, 78, 86, 222, 701 |
| GsuI | CTGGAG | 1 cut(s) | 269 |
| HaeII | RGCGCY | 2 cut(s) | 492, 684 |
| HapII | CCGG | 1 cut(s) | 454 |
| HgaI | GACGC | 1 cut(s) | 659 |
| HhaI | GCGC | 3 cut(s) | 475, 491, 683 |
| Hin1I | GRCGYC | 3 cut(s) | 489, 651, 681 |
| Hin1II | CATG | 5 cut(s) | 92, 181, 650, 658, 674 |
| Hin6I | GCGC | 3 cut(s) | 473, 489, 681 |
| HinP1I | GCGC | 3 cut(s) | 473, 489, 681 |
| HindIII | AAGCTT | 1 cut(s) | 201 |
| HinfI | GANTC | 5 cut(s) | 27, 262, 278, 359, 457 |
| HpaII | CCGG | 1 cut(s) | 454 |
| HphI | GGTGA | 6 cut(s) | 6, 22, 574, 686, 699, 706 |
| Hpy166II | GTNNAC | 1 cut(s) | 613 |
| Hpy188I | TCNGA | 1 cut(s) | 123 |
| Hpy188III | TCNNGA | 4 cut(s) | 173, 371, 428, 454 |
| Hpy8I | GTNNAC | 1 cut(s) | 613 |
| HpyAV | CCTTC | 4 cut(s) | 113, 309, 479, 553 |
| HpyCH4III | ACNGT | 4 cut(s) | 21, 356, 469, 637 |
| HpyCH4IV | ACGT | 3 cut(s) | 169, 528, 663 |
| HpyCH4V | TGCA | 6 cut(s) | 77, 88, 99, 141, 157, 703 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 74, 77, 209, 218, 230, 239, 495 |
| HpyF3I | CTNAG | 3 cut(s) | 226, 392, 511 |
| HpySE526I | ACGT | 3 cut(s) | 169, 528, 663 |
| Hsp92I | GRCGYC | 3 cut(s) | 489, 651, 681 |
| Hsp92II | CATG | 5 cut(s) | 92, 181, 650, 658, 674 |
| HspAI | GCGC | 3 cut(s) | 473, 489, 681 |
| KasI | GGCGCC | 2 cut(s) | 488, 680 |
| Kpn2I | TCCGGA | 1 cut(s) | 453 |
| Kzo9I | GATC | 2 cut(s) | 123, 430 |
| LmnI | GCTCC | 1 cut(s) | 288 |
| Lsp1109I | GCAGC | 6 cut(s) | 25, 55, 72, 89, 233, 687 |
| LweI | GCATC | 2 cut(s) | 108, 687 |
| MaeI | CTAG | 5 cut(s) | 5, 173, 377, 533, 624 |
| MaeII | ACGT | 3 cut(s) | 169, 528, 663 |
| MaeIII | GTNAC | 1 cut(s) | 356 |
| MalI | GATC | 2 cut(s) | 125, 432 |
| MboI | GATC | 2 cut(s) | 123, 430 |
| MboII | GAAGA | 3 cut(s) | 317, 347, 605 |
| MflI | RGATCY | 1 cut(s) | 430 |
| MhlI | GDGCHC | 1 cut(s) | 602 |
| MluCI | AATT | 3 cut(s) | 183, 423, 462 |
| Mly113I | GGCGCC | 2 cut(s) | 489, 681 |
| MlyI | GAGTC | 3 cut(s) | 21, 256, 353 |
| MnlI | CCTC | 8 cut(s) | 22, 119, 137, 223, 407, 589, 616, 694 |
| MroI | TCCGGA | 1 cut(s) | 453 |
| MslI | CAYNNNNRTG | 4 cut(s) | 257, 273, 672, 675 |
| MspA1I | CMGCKG | 2 cut(s) | 38, 85 |
| MspI | CCGG | 1 cut(s) | 454 |
| MspR9I | CCNGG | 1 cut(s) | 692 |
| MvaI | CCWGG | 1 cut(s) | 692 |
| MvnI | CGCG | 1 cut(s) | 473 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 74, 77, 209, 218, 230, 239, 495 |
| NarI | GGCGCC | 2 cut(s) | 489, 681 |
| NcoI | CCATGG | 1 cut(s) | 654 |
| NdeI | CATATG | 1 cut(s) | 270 |
| NdeII | GATC | 2 cut(s) | 123, 430 |
| NheI | GCTAGC | 1 cut(s) | 4 |
| NlaIII | CATG | 5 cut(s) | 92, 181, 650, 658, 674 |
| NlaIV | GGNNCC | 3 cut(s) | 490, 601, 682 |
| NmuCI | GTSAC | 1 cut(s) | 356 |
| NspI | RCATGY | 2 cut(s) | 92, 181 |
| PaeI | GCATGC | 1 cut(s) | 92 |
| PfeI | GAWTC | 2 cut(s) | 278, 457 |
| PkrI | GCNGC | 9 cut(s) | 10, 37, 40, 59, 70, 79, 87, 223, 702 |
| PleI | GAGTC | 3 cut(s) | 21, 256, 353 |
| PluTI | GGCGCC | 2 cut(s) | 492, 684 |
| PpsI | GAGTC | 3 cut(s) | 21, 256, 353 |
| Psp6I | CCWGG | 1 cut(s) | 690 |
| PspGI | CCWGG | 1 cut(s) | 690 |
| PspN4I | GGNNCC | 3 cut(s) | 490, 601, 682 |
| PstI | CTGCAG | 1 cut(s) | 79 |
| PsuI | RGATCY | 1 cut(s) | 430 |
| RsaI | GTAC | 1 cut(s) | 290 |
| RsaNI | GTAC | 1 cut(s) | 289 |
| RseI | CAYNNNNRTG | 4 cut(s) | 257, 273, 672, 675 |
| SatI | GCNGC | 9 cut(s) | 9, 36, 39, 58, 69, 78, 86, 222, 701 |
| Sau3AI | GATC | 2 cut(s) | 123, 430 |
| SchI | GAGTC | 3 cut(s) | 21, 256, 353 |
| ScrFI | CCNGG | 1 cut(s) | 692 |
| SduI | GDGCHC | 1 cut(s) | 602 |
| SetI | ASST | 9 cut(s) | 10, 172, 199, 205, 378, 531, 564, 666, 696 |
| SfaNI | GCATC | 2 cut(s) | 108, 687 |
| SfcI | CTRYAG | 2 cut(s) | 47, 75 |
| SfoI | GGCGCC | 2 cut(s) | 490, 682 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 257, 273, 672, 675 |
| SmlI | CTYRAG | 1 cut(s) | 198 |
| SmoI | CTYRAG | 1 cut(s) | 198 |
| SphI | GCATGC | 1 cut(s) | 92 |
| Sse9I | AATT | 3 cut(s) | 183, 423, 462 |
| SsiI | CCGC | 5 cut(s) | 33, 36, 58, 83, 603 |
| SspDI | GGCGCC | 2 cut(s) | 488, 680 |
| SspMI | CTAG | 5 cut(s) | 5, 173, 377, 533, 624 |
| StyD4I | CCNGG | 1 cut(s) | 690 |
| StyI | CCWWGG | 2 cut(s) | 623, 654 |
| TaaI | ACNGT | 4 cut(s) | 21, 356, 469, 637 |
| TaiI | ACGT | 3 cut(s) | 172, 531, 666 |
| TaqI | TCGA | 1 cut(s) | 333 |
| TasI | AATT | 3 cut(s) | 183, 423, 462 |
| TauI | GCSGC | 2 cut(s) | 38, 60 |
| TfiI | GAWTC | 2 cut(s) | 278, 457 |
| TseFI | GTSAC | 1 cut(s) | 356 |
| TseI | GCWGC | 7 cut(s) | 8, 38, 68, 77, 85, 221, 700 |
| Tsp45I | GTSAC | 1 cut(s) | 356 |
| TspDTI | ATGAA | 2 cut(s) | 314, 318 |
| TspGWI | ACGGA | 2 cut(s) | 423, 598 |
| XbaI | TCTAGA | 1 cut(s) | 172 |
| XceI | RCATGY | 2 cut(s) | 92, 181 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 626, 674 |
| XmaJI | CCTAGG | 1 cut(s) | 623 |
| XspI | CTAG | 5 cut(s) | 5, 173, 377, 533, 624 |