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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 732 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1068 |
| Acc36I | ACCTGC | 1 cut(s) | 140 |
| AccB1I | GGYRCC | 2 cut(s) | 908, 1222 |
| AccII | CGCG | 2 cut(s) | 578, 1008 |
| AccIII | TCCGGA | 1 cut(s) | 988 |
| AciI | CCGC | 7 cut(s) | 26, 158, 371, 433, 439, 442, 700 |
| AclI | AACGTT | 1 cut(s) | 651 |
| AcsI | RAATTY | 2 cut(s) | 47, 1054 |
| AcuI | CTGAAG | 2 cut(s) | 111, 308 |
| AcyI | GRCGYC | 1 cut(s) | 909 |
| AfaI | GTAC | 2 cut(s) | 289, 378 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1019, 1090 |
| AflIII | ACRYGT | 2 cut(s) | 379, 1138 |
| AgsI | TTSAA | 4 cut(s) | 119, 527, 715, 849 |
| AluBI | AGCT | 7 cut(s) | 164, 264, 515, 539, 743, 901, 923 |
| AluI | AGCT | 7 cut(s) | 164, 264, 515, 539, 743, 901, 923 |
| Alw21I | GWGCWC | 2 cut(s) | 501, 903 |
| Alw26I | GTCTC | 3 cut(s) | 9, 762, 835 |
| Aor13HI | TCCGGA | 1 cut(s) | 988 |
| AoxI | GGCC | 1 cut(s) | 775 |
| ApeKI | GCWGC | 2 cut(s) | 161, 637 |
| ApoI | RAATTY | 2 cut(s) | 47, 1054 |
| AspLEI | GCGC | 3 cut(s) | 580, 911, 1010 |
| AspS9I | GGNCC | 2 cut(s) | 775, 1070 |
| AsuHPI | GGTGA | 4 cut(s) | 16, 22, 376, 401 |
| AvaII | GGWCC | 1 cut(s) | 1070 |
| BanI | GGYRCC | 2 cut(s) | 908, 1222 |
| BanII | GRGCYC | 1 cut(s) | 903 |
| BbsI | GAAGAC | 2 cut(s) | 612, 815 |
| Bbv12I | GWGCWC | 2 cut(s) | 501, 903 |
| BbvCI | CCTCAGC | 1 cut(s) | 165 |
| BbvI | GCAGC | 2 cut(s) | 173, 649 |
| BccI | CCATC | 8 cut(s) | 23, 184, 274, 452, 482, 554, 681, 757 |
| BceAI | ACGGC | 1 cut(s) | 384 |
| BcoDI | GTCTC | 3 cut(s) | 9, 762, 835 |
| BfaI | CTAG | 3 cut(s) | 236, 486, 963 |
| BfoI | RGCGCY | 1 cut(s) | 912 |
| BfuAI | ACCTGC | 1 cut(s) | 140 |
| BglII | AGATCT | 1 cut(s) | 294 |
| BisI | GCNGC | 5 cut(s) | 159, 162, 440, 443, 638 |
| BlsI | GCNGC | 5 cut(s) | 160, 163, 441, 444, 639 |
| Bme18I | GGWCC | 1 cut(s) | 1070 |
| BmgT120I | GGNCC | 2 cut(s) | 775, 1070 |
| BmiI | GGNNCC | 4 cut(s) | 776, 910, 1124, 1224 |
| BmrI | ACTGGG | 1 cut(s) | 745 |
| BmsI | GCATC | 4 cut(s) | 84, 278, 313, 325 |
| BmuI | ACTGGG | 1 cut(s) | 745 |
| BpiI | GAAGAC | 2 cut(s) | 612, 815 |
| BpmI | CTGGAG | 1 cut(s) | 258 |
| Bpu10I | CCTNAGC | 1 cut(s) | 165 |
| BpuEI | CTTGAG | 2 cut(s) | 128, 653 |
| BsaBI | GATNNNNATC | 1 cut(s) | 800 |
| BsaHI | GRCGYC | 1 cut(s) | 909 |
| BsaJI | CCNNGG | 3 cut(s) | 969, 1126, 1171 |
| BsaWI | WCCGGW | 1 cut(s) | 988 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1019, 1090 |
| Bse1I | ACTGG | 1 cut(s) | 740 |
| Bse3DI | GCAATG | 1 cut(s) | 177 |
| Bse8I | GATNNNNATC | 1 cut(s) | 800 |
| BseAI | TCCGGA | 1 cut(s) | 988 |
| BseDI | CCNNGG | 3 cut(s) | 969, 1126, 1171 |
| BseGI | GGATG | 4 cut(s) | 34, 72, 195, 474 |
| BseJI | GATNNNNATC | 1 cut(s) | 800 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1019, 1090 |
| BseMI | GCAATG | 1 cut(s) | 177 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BseNI | ACTGG | 1 cut(s) | 740 |
| BseRI | GAGGAG | 2 cut(s) | 111, 138 |
| BseXI | GCAGC | 2 cut(s) | 173, 649 |
| BsgI | GTGCAG | 1 cut(s) | 819 |
| Bsh1236I | CGCG | 2 cut(s) | 578, 1008 |
| BshFI | GGCC | 1 cut(s) | 777 |
| BshNI | GGYRCC | 2 cut(s) | 908, 1222 |
| BsiHKAI | GWGCWC | 2 cut(s) | 501, 903 |
| BsiSI | CCGG | 2 cut(s) | 301, 989 |
| BslFI | GGGAC | 1 cut(s) | 117 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1019, 1090 |
| BsmAI | GTCTC | 3 cut(s) | 9, 762, 835 |
| BsmBI | CGTCTC | 2 cut(s) | 9, 835 |
| BsmFI | GGGAC | 1 cut(s) | 117 |
| BsnI | GGCC | 1 cut(s) | 777 |
| Bsp1286I | GDGCHC | 2 cut(s) | 501, 903 |
| Bsp13I | TCCGGA | 1 cut(s) | 988 |
| Bsp143I | GATC | 3 cut(s) | 144, 294, 801 |
| Bsp19I | CCATGG | 1 cut(s) | 1171 |
| BspACI | CCGC | 7 cut(s) | 26, 158, 371, 433, 439, 442, 700 |
| BspANI | GGCC | 1 cut(s) | 777 |
| BspCNI | CTCAG | 1 cut(s) | 157 |
| BspEI | TCCGGA | 1 cut(s) | 988 |
| BspFNI | CGCG | 2 cut(s) | 578, 1008 |
| BspHI | TCATGA | 2 cut(s) | 555, 895 |
| BspLI | GGNNCC | 4 cut(s) | 776, 910, 1124, 1224 |
| BspMI | ACCTGC | 1 cut(s) | 140 |
| BspT107I | GGYRCC | 2 cut(s) | 908, 1222 |
| BsrDI | GCAATG | 1 cut(s) | 177 |
| BsrI | ACTGG | 1 cut(s) | 740 |
| BssECI | CCNNGG | 3 cut(s) | 969, 1126, 1171 |
| BssMI | GATC | 3 cut(s) | 144, 294, 801 |
| BssNI | GRCGYC | 1 cut(s) | 909 |
| BssT1I | CCWWGG | 1 cut(s) | 1171 |
| Bst4CI | ACNGT | 1 cut(s) | 1127 |
| BstACI | GRCGYC | 1 cut(s) | 909 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 155 |
| BstC8I | GCNNGC | 2 cut(s) | 513, 1116 |
| BstDEI | CTNAG | 4 cut(s) | 141, 165, 978, 1041 |
| BstDSI | CCRYGG | 3 cut(s) | 969, 1126, 1171 |
| BstF5I | GGATG | 4 cut(s) | 34, 72, 195, 474 |
| BstFNI | CGCG | 2 cut(s) | 578, 1008 |
| BstH2I | RGCGCY | 1 cut(s) | 912 |
| BstHHI | GCGC | 3 cut(s) | 580, 911, 1010 |
| BstKTI | GATC | 3 cut(s) | 147, 297, 804 |
| BstMAI | GTCTC | 3 cut(s) | 9, 762, 835 |
| BstMBI | GATC | 3 cut(s) | 144, 294, 801 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 155, 167, 275, 439, 536 |
| BstNSI | RCATGY | 3 cut(s) | 358, 383, 1118 |
| BstUI | CGCG | 2 cut(s) | 578, 1008 |
| BstV1I | GCAGC | 2 cut(s) | 173, 649 |
| BstV2I | GAAGAC | 2 cut(s) | 612, 815 |
| BstX2I | RGATCY | 1 cut(s) | 294 |
| BstYI | RGATCY | 1 cut(s) | 294 |
| BsuRI | GGCC | 1 cut(s) | 777 |
| BtgI | CCRYGG | 3 cut(s) | 969, 1126, 1171 |
| BtgZI | GCGATG | 2 cut(s) | 293, 700 |
| BtsCI | GGATG | 4 cut(s) | 34, 72, 195, 474 |
| BtsIMutI | CAGTG | 1 cut(s) | 836 |
| BveI | ACCTGC | 1 cut(s) | 140 |
| Cac8I | GCNNGC | 2 cut(s) | 513, 1116 |
| CciI | TCATGA | 2 cut(s) | 555, 895 |
| CfoI | GCGC | 3 cut(s) | 580, 911, 1010 |
| Cfr13I | GGNCC | 2 cut(s) | 775, 1070 |
| CseI | GACGC | 2 cut(s) | 412, 1032 |
| Csp6I | GTAC | 2 cut(s) | 288, 377 |
| CviQI | GTAC | 2 cut(s) | 288, 377 |
| DdeI | CTNAG | 4 cut(s) | 141, 165, 978, 1041 |
| DinI | GGCGCC | 1 cut(s) | 910 |
| DpnI | GATC | 3 cut(s) | 146, 296, 803 |
| DpnII | GATC | 3 cut(s) | 144, 294, 801 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1068 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1068 |
| EciI | GGCGGA | 1 cut(s) | 41 |
| Ecl136II | GAGCTC | 1 cut(s) | 901 |
| Eco130I | CCWWGG | 1 cut(s) | 1171 |
| Eco24I | GRGCYC | 1 cut(s) | 903 |
| Eco47I | GGWCC | 1 cut(s) | 1070 |
| Eco53kI | GAGCTC | 1 cut(s) | 901 |
| Eco57I | CTGAAG | 2 cut(s) | 111, 308 |
| EcoICRI | GAGCTC | 1 cut(s) | 901 |
| EcoT14I | CCWWGG | 1 cut(s) | 1171 |
| EcoT38I | GRGCYC | 1 cut(s) | 903 |
| EgeI | GGCGCC | 1 cut(s) | 910 |
| EheI | GGCGCC | 1 cut(s) | 910 |
| ErhI | CCWWGG | 1 cut(s) | 1171 |
| Esp3I | CGTCTC | 2 cut(s) | 9, 835 |
| FaqI | GGGAC | 1 cut(s) | 117 |
| FauNDI | CATATG | 1 cut(s) | 1075 |
| Fnu4HI | GCNGC | 5 cut(s) | 159, 162, 440, 443, 638 |
| FokI | GGATG | 4 cut(s) | 41, 79, 202, 461 |
| FriOI | GRGCYC | 1 cut(s) | 903 |
| Fsp4HI | GCNGC | 5 cut(s) | 159, 162, 440, 443, 638 |
| FspBI | CTAG | 3 cut(s) | 236, 486, 963 |
| GlaI | GCGC | 3 cut(s) | 579, 910, 1009 |
| GluI | GCNGC | 5 cut(s) | 159, 162, 440, 443, 638 |
| GsuI | CTGGAG | 1 cut(s) | 258 |
| HaeII | RGCGCY | 1 cut(s) | 912 |
| HaeIII | GGCC | 1 cut(s) | 777 |
| HapII | CCGG | 2 cut(s) | 301, 989 |
| HgaI | GACGC | 2 cut(s) | 412, 1032 |
| HhaI | GCGC | 3 cut(s) | 580, 911, 1010 |
| Hin1I | GRCGYC | 1 cut(s) | 909 |
| Hin6I | GCGC | 3 cut(s) | 578, 909, 1008 |
| HinP1I | GCGC | 3 cut(s) | 578, 909, 1008 |
| HincII | GTYRAC | 2 cut(s) | 871, 1136 |
| HindII | GTYRAC | 2 cut(s) | 871, 1136 |
| HinfI | GANTC | 4 cut(s) | 223, 659, 811, 992 |
| HpaI | GTTAAC | 1 cut(s) | 871 |
| HpaII | CCGG | 2 cut(s) | 301, 989 |
| HphI | GGTGA | 4 cut(s) | 16, 22, 376, 401 |
| Hpy166II | GTNNAC | 2 cut(s) | 871, 1136 |
| Hpy188I | TCNGA | 5 cut(s) | 233, 492, 762, 861, 1168 |
| Hpy8I | GTNNAC | 2 cut(s) | 871, 1136 |
| Hpy99I | CGWCG | 1 cut(s) | 428 |
| HpyAV | CCTTC | 4 cut(s) | 64, 86, 113, 832 |
| HpyCH4III | ACNGT | 1 cut(s) | 1127 |
| HpyCH4IV | ACGT | 5 cut(s) | 495, 651, 880, 918, 1138 |
| HpyCH4V | TGCA | 2 cut(s) | 836, 1118 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 155, 167, 275, 439, 536 |
| HpyF3I | CTNAG | 4 cut(s) | 141, 165, 978, 1041 |
| HpySE526I | ACGT | 5 cut(s) | 495, 651, 880, 918, 1138 |
| Hsp92I | GRCGYC | 1 cut(s) | 909 |
| HspAI | GCGC | 3 cut(s) | 578, 909, 1008 |
| KasI | GGCGCC | 1 cut(s) | 908 |
| Kpn2I | TCCGGA | 1 cut(s) | 988 |
| KspAI | GTTAAC | 1 cut(s) | 871 |
| Kzo9I | GATC | 3 cut(s) | 144, 294, 801 |
| LmnI | GCTCC | 2 cut(s) | 585, 1030 |
| Lsp1109I | GCAGC | 2 cut(s) | 173, 649 |
| LweI | GCATC | 4 cut(s) | 84, 278, 313, 325 |
| MaeI | CTAG | 3 cut(s) | 236, 486, 963 |
| MaeII | ACGT | 5 cut(s) | 495, 651, 880, 918, 1138 |
| MaeIII | GTNAC | 3 cut(s) | 364, 656, 1178 |
| MalI | GATC | 3 cut(s) | 146, 296, 803 |
| MboI | GATC | 3 cut(s) | 144, 294, 801 |
| MboII | GAAGA | 3 cut(s) | 289, 617, 820 |
| MflI | RGATCY | 1 cut(s) | 294 |
| MhlI | GDGCHC | 2 cut(s) | 501, 903 |
| MluCI | AATT | 4 cut(s) | 47, 227, 853, 1054 |
| Mly113I | GGCGCC | 1 cut(s) | 909 |
| MlyI | GAGTC | 3 cut(s) | 217, 653, 805 |
| MmeI | TCCRAC | 2 cut(s) | 223, 1191 |
| MroI | TCCGGA | 1 cut(s) | 988 |
| MseI | TTAA | 1 cut(s) | 870 |
| MslI | CAYNNNNRTG | 4 cut(s) | 359, 384, 554, 1217 |
| MspA1I | CMGCKG | 1 cut(s) | 164 |
| MspI | CCGG | 2 cut(s) | 301, 989 |
| MvnI | CGCG | 2 cut(s) | 578, 1008 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 155, 167, 275, 439, 536 |
| NarI | GGCGCC | 1 cut(s) | 909 |
| NcoI | CCATGG | 1 cut(s) | 1171 |
| NdeI | CATATG | 1 cut(s) | 1075 |
| NdeII | GATC | 3 cut(s) | 144, 294, 801 |
| NlaIV | GGNNCC | 4 cut(s) | 776, 910, 1124, 1224 |
| NmeAIII | GCCGAG | 2 cut(s) | 245, 319 |
| NmuCI | GTSAC | 2 cut(s) | 364, 656 |
| NspI | RCATGY | 3 cut(s) | 358, 383, 1118 |
| PaeI | GCATGC | 1 cut(s) | 1118 |
| PagI | TCATGA | 2 cut(s) | 555, 895 |
| PciI | ACATGT | 1 cut(s) | 379 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1030 |
| PfeI | GAWTC | 1 cut(s) | 992 |
| PkrI | GCNGC | 5 cut(s) | 160, 163, 441, 444, 639 |
| PleI | GAGTC | 3 cut(s) | 217, 653, 805 |
| PluTI | GGCGCC | 1 cut(s) | 912 |
| PpsI | GAGTC | 3 cut(s) | 217, 653, 805 |
| PscI | ACATGT | 1 cut(s) | 379 |
| PsiI | TTATAA | 1 cut(s) | 732 |
| Psp124BI | GAGCTC | 1 cut(s) | 903 |
| Psp1406I | AACGTT | 1 cut(s) | 651 |
| PspN4I | GGNNCC | 4 cut(s) | 776, 910, 1124, 1224 |
| PspPI | GGNCC | 2 cut(s) | 775, 1070 |
| PsuI | RGATCY | 1 cut(s) | 294 |
| PvuII | CAGCTG | 1 cut(s) | 164 |
| RsaI | GTAC | 2 cut(s) | 289, 378 |
| RsaNI | GTAC | 2 cut(s) | 288, 377 |
| RseI | CAYNNNNRTG | 4 cut(s) | 359, 384, 554, 1217 |
| SacI | GAGCTC | 1 cut(s) | 903 |
| SaqAI | TTAA | 1 cut(s) | 870 |
| SatI | GCNGC | 5 cut(s) | 159, 162, 440, 443, 638 |
| Sau3AI | GATC | 3 cut(s) | 144, 294, 801 |
| Sau96I | GGNCC | 2 cut(s) | 775, 1070 |
| SchI | GAGTC | 3 cut(s) | 217, 653, 805 |
| SduI | GDGCHC | 2 cut(s) | 501, 903 |
| SfaNI | GCATC | 4 cut(s) | 84, 278, 313, 325 |
| SfoI | GGCGCC | 1 cut(s) | 910 |
| SinI | GGWCC | 1 cut(s) | 1070 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 359, 384, 554, 1217 |
| SmlI | CTYRAG | 2 cut(s) | 107, 632 |
| SmoI | CTYRAG | 2 cut(s) | 107, 632 |
| SphI | GCATGC | 1 cut(s) | 1118 |
| Sse9I | AATT | 4 cut(s) | 47, 227, 853, 1054 |
| SsiI | CCGC | 7 cut(s) | 26, 158, 371, 433, 439, 442, 700 |
| SspDI | GGCGCC | 1 cut(s) | 908 |
| SspMI | CTAG | 3 cut(s) | 236, 486, 963 |
| SstI | GAGCTC | 1 cut(s) | 903 |
| StyI | CCWWGG | 1 cut(s) | 1171 |
| TaaI | ACNGT | 1 cut(s) | 1127 |
| TaiI | ACGT | 5 cut(s) | 498, 654, 883, 921, 1141 |
| TaqI | TCGA | 3 cut(s) | 333, 426, 804 |
| TasI | AATT | 4 cut(s) | 47, 227, 853, 1054 |
| TauI | GCSGC | 3 cut(s) | 161, 442, 445 |
| TfiI | GAWTC | 1 cut(s) | 992 |
| Tru1I | TTAA | 1 cut(s) | 870 |
| Tru9I | TTAA | 1 cut(s) | 870 |
| TscAI | CASTG | 1 cut(s) | 843 |
| TseFI | GTSAC | 2 cut(s) | 364, 656 |
| TseI | GCWGC | 2 cut(s) | 161, 637 |
| Tsp45I | GTSAC | 2 cut(s) | 364, 656 |
| TspDTI | ATGAA | 5 cut(s) | 83, 584, 603, 884, 929 |
| TspGWI | ACGGA | 2 cut(s) | 265, 1110 |
| TspRI | CASTG | 1 cut(s) | 843 |
| VpaK11BI | GGWCC | 1 cut(s) | 1070 |
| XapI | RAATTY | 2 cut(s) | 47, 1054 |
| XceI | RCATGY | 3 cut(s) | 358, 383, 1118 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 618 |
| XspI | CTAG | 3 cut(s) | 236, 486, 963 |