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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 728 |
| AccB1I | GGYRCC | 1 cut(s) | 841 |
| AccII | CGCG | 1 cut(s) | 669 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AciI | CCGC | 2 cut(s) | 79, 361 |
| AclWI | GGATC | 1 cut(s) | 621 |
| AcoI | YGGCCR | 1 cut(s) | 828 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 1 cut(s) | 842 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 1 cut(s) | 376 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 2 cut(s) | 155, 572 |
| AluI | AGCT | 2 cut(s) | 155, 572 |
| Alw26I | GTCTC | 2 cut(s) | 292, 496 |
| AlwI | GGATC | 1 cut(s) | 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| AoxI | GGCC | 1 cut(s) | 828 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 405, 645 |
| AspLEI | GCGC | 3 cut(s) | 671, 686, 844 |
| AspS9I | GGNCC | 1 cut(s) | 730 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 730 |
| BalI | TGGCCA | 1 cut(s) | 830 |
| BanI | GGYRCC | 1 cut(s) | 841 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 215, 342, 496 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 2 cut(s) | 103, 705 |
| BcoDI | GTCTC | 2 cut(s) | 292, 496 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BfoI | RGCGCY | 1 cut(s) | 845 |
| BfuI | GTATCC | 2 cut(s) | 103, 705 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 730 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 730 |
| BmiI | GGNNCC | 2 cut(s) | 784, 843 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 94, 105 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 156 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BsaHI | GRCGYC | 1 cut(s) | 842 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 630 |
| BsaWI | WCCGGW | 2 cut(s) | 649, 785 |
| Bse1I | ACTGG | 1 cut(s) | 244 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 630 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseMII | CTCAG | 1 cut(s) | 170 |
| BseNI | ACTGG | 1 cut(s) | 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 669 |
| BshFI | GGCC | 1 cut(s) | 830 |
| BshNI | GGYRCC | 1 cut(s) | 841 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 2 cut(s) | 650, 786 |
| BsmAI | GTCTC | 2 cut(s) | 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsnI | GGCC | 1 cut(s) | 830 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp143I | GATC | 2 cut(s) | 444, 626 |
| BspACI | CCGC | 2 cut(s) | 79, 361 |
| BspANI | GGCC | 1 cut(s) | 830 |
| BspCNI | CTCAG | 1 cut(s) | 169 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspFNI | CGCG | 1 cut(s) | 669 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 2 cut(s) | 784, 843 |
| BspPI | GGATC | 1 cut(s) | 621 |
| BspT107I | GGYRCC | 1 cut(s) | 841 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 244 |
| BssECI | CCNNGG | 1 cut(s) | 630 |
| BssMI | GATC | 2 cut(s) | 444, 626 |
| BssNI | GRCGYC | 1 cut(s) | 842 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 1 cut(s) | 842 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 4 cut(s) | 156, 510, 706, 854 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstFNI | CGCG | 1 cut(s) | 669 |
| BstH2I | RGCGCY | 1 cut(s) | 845 |
| BstHHI | GCGC | 3 cut(s) | 671, 686, 844 |
| BstKTI | GATC | 2 cut(s) | 447, 629 |
| BstMAI | GTCTC | 2 cut(s) | 292, 496 |
| BstMBI | GATC | 2 cut(s) | 444, 626 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstUI | CGCG | 1 cut(s) | 669 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 838 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| BsuI | GTATCC | 2 cut(s) | 103, 705 |
| BsuRI | GGCC | 1 cut(s) | 830 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 3 cut(s) | 671, 686, 844 |
| Cfr13I | GGNCC | 1 cut(s) | 730 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 4 cut(s) | 325, 557, 593, 832 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 4 cut(s) | 156, 510, 706, 854 |
| DinI | GGCGCC | 1 cut(s) | 843 |
| DpnI | GATC | 2 cut(s) | 446, 628 |
| DpnII | GATC | 2 cut(s) | 444, 626 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 728 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 728 |
| EaeI | YGGCCR | 1 cut(s) | 828 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 730 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EgeI | GGCGCC | 1 cut(s) | 843 |
| EheI | GGCGCC | 1 cut(s) | 843 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 4 cut(s) | 328, 560, 596, 835 |
| FatI | CATG | 4 cut(s) | 324, 556, 592, 831 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GlaI | GCGC | 3 cut(s) | 670, 685, 843 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 1 cut(s) | 845 |
| HaeIII | GGCC | 1 cut(s) | 830 |
| HapII | CCGG | 2 cut(s) | 650, 786 |
| HhaI | GCGC | 3 cut(s) | 671, 686, 844 |
| Hin1I | GRCGYC | 1 cut(s) | 842 |
| Hin1II | CATG | 4 cut(s) | 328, 560, 596, 835 |
| Hin6I | GCGC | 3 cut(s) | 669, 684, 842 |
| HinP1I | GCGC | 3 cut(s) | 669, 684, 842 |
| HincII | GTYRAC | 1 cut(s) | 796 |
| HindII | GTYRAC | 1 cut(s) | 796 |
| HinfI | GANTC | 7 cut(s) | 102, 236, 320, 472, 522, 543, 653 |
| HpaII | CCGG | 2 cut(s) | 650, 786 |
| Hpy166II | GTNNAC | 1 cut(s) | 796 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 400 |
| Hpy188III | TCNNGA | 7 cut(s) | 71, 332, 386, 557, 624, 650, 719 |
| Hpy8I | GTNNAC | 1 cut(s) | 796 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 312, 798 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 536 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| HpyF3I | CTNAG | 4 cut(s) | 156, 510, 706, 854 |
| HpySE526I | ACGT | 3 cut(s) | 135, 312, 798 |
| Hsp92I | GRCGYC | 1 cut(s) | 842 |
| Hsp92II | CATG | 4 cut(s) | 328, 560, 596, 835 |
| HspAI | GCGC | 3 cut(s) | 669, 684, 842 |
| KasI | GGCGCC | 1 cut(s) | 841 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| Kzo9I | GATC | 2 cut(s) | 444, 626 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 569 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 105 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 3 cut(s) | 135, 312, 798 |
| MaeIII | GTNAC | 4 cut(s) | 5, 308, 317, 529 |
| MalI | GATC | 2 cut(s) | 446, 628 |
| MboI | GATC | 2 cut(s) | 444, 626 |
| MboII | GAAGA | 5 cut(s) | 275, 278, 308, 481, 622 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MlsI | TGGCCA | 1 cut(s) | 830 |
| MluCI | AATT | 5 cut(s) | 17, 42, 428, 619, 658 |
| MluNI | TGGCCA | 1 cut(s) | 830 |
| Mly113I | GGCGCC | 1 cut(s) | 842 |
| MlyI | GAGTC | 2 cut(s) | 314, 466 |
| MnlI | CCTC | 8 cut(s) | 368, 497, 553, 684, 784, 804, 808, 834 |
| Mox20I | TGGCCA | 1 cut(s) | 830 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 2 cut(s) | 405, 645 |
| MscI | TGGCCA | 1 cut(s) | 830 |
| MseI | TTAA | 3 cut(s) | 185, 414, 422 |
| MslI | CAYNNNNRTG | 3 cut(s) | 231, 605, 836 |
| Msp20I | TGGCCA | 1 cut(s) | 830 |
| MspI | CCGG | 2 cut(s) | 650, 786 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MunI | CAATTG | 1 cut(s) | 42 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MvnI | CGCG | 1 cut(s) | 669 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| NarI | GGCGCC | 1 cut(s) | 842 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 444, 626 |
| NlaIII | CATG | 4 cut(s) | 328, 560, 596, 835 |
| NlaIV | GGNNCC | 2 cut(s) | 784, 843 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 2 cut(s) | 405, 645 |
| PfeI | GAWTC | 5 cut(s) | 102, 236, 522, 543, 653 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 314, 466 |
| PluTI | GGCGCC | 1 cut(s) | 845 |
| PpsI | GAGTC | 2 cut(s) | 314, 466 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 784, 843 |
| PspPI | GGNCC | 1 cut(s) | 730 |
| PspXI | VCTCGAGB | 1 cut(s) | 119 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 3 cut(s) | 231, 605, 836 |
| SaqAI | TTAA | 3 cut(s) | 185, 414, 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 2 cut(s) | 444, 626 |
| Sau96I | GGNCC | 1 cut(s) | 730 |
| SchI | GAGTC | 2 cut(s) | 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SfaNI | GCATC | 2 cut(s) | 94, 105 |
| SfoI | GGCGCC | 1 cut(s) | 843 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 730 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 231, 605, 836 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 5 cut(s) | 17, 42, 428, 619, 658 |
| SsiI | CCGC | 2 cut(s) | 79, 361 |
| SspDI | GGCGCC | 1 cut(s) | 841 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 3 cut(s) | 138, 315, 801 |
| TaqI | TCGA | 5 cut(s) | 96, 120, 294, 520, 623 |
| TasI | AATT | 5 cut(s) | 17, 42, 428, 619, 658 |
| TfiI | GAWTC | 5 cut(s) | 102, 236, 522, 543, 653 |
| Tru1I | TTAA | 3 cut(s) | 185, 414, 422 |
| Tru9I | TTAA | 3 cut(s) | 185, 414, 422 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 4 cut(s) | 272, 276, 545, 590 |
| TspGWI | ACGGA | 3 cut(s) | 305, 619, 795 |
| VpaK11BI | GGWCC | 1 cut(s) | 730 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 2 cut(s) | 405, 645 |
| XspI | CTAG | 2 cut(s) | 126, 338 |