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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 261, 306 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 369 |
| AccB1I | GGYRCC | 1 cut(s) | 482 |
| AccBSI | CCGCTC | 1 cut(s) | 334 |
| AccI | GTMKAC | 1 cut(s) | 574 |
| AciI | CCGC | 5 cut(s) | 334, 382, 403, 416, 762 |
| AclWI | GGATC | 2 cut(s) | 194, 595 |
| AcoI | YGGCCR | 1 cut(s) | 469 |
| AcsI | RAATTY | 1 cut(s) | 71 |
| AcuI | CTGAAG | 1 cut(s) | 759 |
| AcvI | CACGTG | 2 cut(s) | 425, 443 |
| AcyI | GRCGYC | 1 cut(s) | 483 |
| AdeI | CACNNNGTG | 2 cut(s) | 428, 533 |
| AfaI | GTAC | 1 cut(s) | 166 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 320, 321, 391, 444, 473, 517 |
| AflIII | ACRYGT | 2 cut(s) | 422, 440 |
| AgsI | TTSAA | 4 cut(s) | 267, 547, 607, 733 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 86 |
| AjnI | CCWGG | 1 cut(s) | 466 |
| AluBI | AGCT | 4 cut(s) | 103, 227, 635, 737 |
| AluI | AGCT | 4 cut(s) | 103, 227, 635, 737 |
| Alw21I | GWGCWC | 2 cut(s) | 538, 753 |
| Alw26I | GTCTC | 2 cut(s) | 154, 546 |
| Alw44I | GTGCAC | 2 cut(s) | 534, 749 |
| AlwI | GGATC | 2 cut(s) | 194, 595 |
| AoxI | GGCC | 1 cut(s) | 469 |
| ApaLI | GTGCAC | 2 cut(s) | 534, 749 |
| ApeKI | GCWGC | 1 cut(s) | 635 |
| ApoI | RAATTY | 1 cut(s) | 71 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 48 |
| AspA2I | CCTAGG | 1 cut(s) | 515 |
| AspLEI | GCGC | 2 cut(s) | 16, 485 |
| AspS9I | GGNCC | 3 cut(s) | 172, 371, 658 |
| AsuHPI | GGTGA | 3 cut(s) | 488, 709, 713 |
| AvaII | GGWCC | 3 cut(s) | 172, 371, 658 |
| AvrII | CCTAGG | 1 cut(s) | 515 |
| BaeGI | GKGCMC | 3 cut(s) | 327, 538, 753 |
| BalI | TGGCCA | 1 cut(s) | 471 |
| BanI | GGYRCC | 1 cut(s) | 482 |
| BauI | CACGAG | 2 cut(s) | 190, 248 |
| BbrPI | CACGTG | 2 cut(s) | 425, 443 |
| Bbv12I | GWGCWC | 2 cut(s) | 538, 753 |
| BbvI | GCAGC | 1 cut(s) | 622 |
| BccI | CCATC | 2 cut(s) | 473, 692 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 158, 192 |
| BciT130I | CCWGG | 1 cut(s) | 468 |
| BciVI | GTATCC | 2 cut(s) | 412, 473 |
| BcoDI | GTCTC | 2 cut(s) | 154, 546 |
| BfaI | CTAG | 2 cut(s) | 516, 632 |
| BfoI | RGCGCY | 1 cut(s) | 486 |
| BfuI | GTATCC | 2 cut(s) | 412, 473 |
| BisI | GCNGC | 2 cut(s) | 636, 762 |
| BlnI | CCTAGG | 1 cut(s) | 515 |
| BlsI | GCNGC | 2 cut(s) | 637, 763 |
| Bme1390I | CCNGG | 1 cut(s) | 468 |
| Bme18I | GGWCC | 3 cut(s) | 172, 371, 658 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 86 |
| BmgT120I | GGNCC | 3 cut(s) | 172, 371, 658 |
| BmiI | GGNNCC | 5 cut(s) | 338, 372, 484, 505, 659 |
| BmrFI | CCNGG | 1 cut(s) | 468 |
| BmsI | GCATC | 1 cut(s) | 748 |
| Bsa29I | ATCGAT | 1 cut(s) | 580 |
| BsaAI | YACGTR | 2 cut(s) | 425, 443 |
| BsaBI | GATNNNNATC | 2 cut(s) | 586, 711 |
| BsaHI | GRCGYC | 1 cut(s) | 483 |
| BsaI | GGTCTC | 1 cut(s) | 154 |
| BsaJI | CCNNGG | 5 cut(s) | 168, 466, 472, 486, 515 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 439, 469 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 320, 321, 391, 444, 473, 517 |
| Bse3DI | GCAATG | 1 cut(s) | 617 |
| Bse8I | GATNNNNATC | 2 cut(s) | 586, 711 |
| BseBI | CCWGG | 1 cut(s) | 468 |
| BseCI | ATCGAT | 1 cut(s) | 580 |
| BseDI | CCNNGG | 5 cut(s) | 168, 466, 472, 486, 515 |
| BseGI | GGATG | 1 cut(s) | 763 |
| BseJI | GATNNNNATC | 2 cut(s) | 586, 711 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 320, 321, 391, 444, 473, 517 |
| BseMI | GCAATG | 1 cut(s) | 617 |
| BseMII | CTCAG | 2 cut(s) | 219, 653 |
| BseSI | GKGCMC | 3 cut(s) | 327, 538, 753 |
| BseXI | GCAGC | 1 cut(s) | 622 |
| BshFI | GGCC | 1 cut(s) | 471 |
| BshNI | GGYRCC | 1 cut(s) | 482 |
| BshVI | ATCGAT | 1 cut(s) | 580 |
| BsiHKAI | GWGCWC | 2 cut(s) | 538, 753 |
| BslFI | GGGAC | 2 cut(s) | 375, 671 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 320, 321, 391, 444, 473, 517 |
| BsmAI | GTCTC | 2 cut(s) | 154, 546 |
| BsmFI | GGGAC | 2 cut(s) | 375, 671 |
| BsnI | GGCC | 1 cut(s) | 471 |
| Bso31I | GGTCTC | 1 cut(s) | 154 |
| Bsp1286I | GDGCHC | 3 cut(s) | 327, 538, 753 |
| Bsp143I | GATC | 2 cut(s) | 186, 587 |
| Bsp19I | CCATGG | 2 cut(s) | 472, 486 |
| BspACI | CCGC | 5 cut(s) | 334, 382, 403, 416, 762 |
| BspANI | GGCC | 1 cut(s) | 471 |
| BspCNI | CTCAG | 2 cut(s) | 220, 654 |
| BspDI | ATCGAT | 1 cut(s) | 580 |
| BspHI | TCATGA | 1 cut(s) | 292 |
| BspLI | GGNNCC | 5 cut(s) | 338, 372, 484, 505, 659 |
| BspPI | GGATC | 2 cut(s) | 194, 595 |
| BspT107I | GGYRCC | 1 cut(s) | 482 |
| BspTNI | GGTCTC | 1 cut(s) | 154 |
| BsrBI | CCGCTC | 1 cut(s) | 334 |
| BsrDI | GCAATG | 1 cut(s) | 617 |
| BssECI | CCNNGG | 5 cut(s) | 168, 466, 472, 486, 515 |
| BssMI | GATC | 2 cut(s) | 186, 587 |
| BssNI | GRCGYC | 1 cut(s) | 483 |
| BssSI | CACGAG | 2 cut(s) | 190, 248 |
| BssT1I | CCWWGG | 3 cut(s) | 472, 486, 515 |
| Bst2BI | CACGAG | 2 cut(s) | 190, 248 |
| Bst2UI | CCWGG | 1 cut(s) | 468 |
| BstACI | GRCGYC | 1 cut(s) | 483 |
| BstBAI | YACGTR | 2 cut(s) | 425, 443 |
| BstC8I | GCNNGC | 2 cut(s) | 622, 626 |
| BstDEI | CTNAG | 4 cut(s) | 228, 282, 342, 662 |
| BstDSI | CCRYGG | 2 cut(s) | 472, 486 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 389 |
| BstF5I | GGATG | 1 cut(s) | 763 |
| BstH2I | RGCGCY | 1 cut(s) | 486 |
| BstHHI | GCGC | 2 cut(s) | 16, 485 |
| BstKTI | GATC | 2 cut(s) | 189, 590 |
| BstMAI | GTCTC | 2 cut(s) | 154, 546 |
| BstMBI | GATC | 2 cut(s) | 186, 587 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 331, 621 |
| BstNI | CCWGG | 1 cut(s) | 468 |
| BstSCI | CCNGG | 1 cut(s) | 466 |
| BstSLI | GKGCMC | 3 cut(s) | 327, 538, 753 |
| BstV1I | GCAGC | 1 cut(s) | 622 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 479 |
| Bsu15I | ATCGAT | 1 cut(s) | 580 |
| BsuI | GTATCC | 2 cut(s) | 412, 473 |
| BsuRI | GGCC | 1 cut(s) | 471 |
| BsuTUI | ATCGAT | 1 cut(s) | 580 |
| BtgI | CCRYGG | 2 cut(s) | 472, 486 |
| BtsCI | GGATG | 1 cut(s) | 763 |
| Cac8I | GCNNGC | 2 cut(s) | 622, 626 |
| CciI | TCATGA | 1 cut(s) | 292 |
| CfoI | GCGC | 2 cut(s) | 16, 485 |
| Cfr13I | GGNCC | 3 cut(s) | 172, 371, 658 |
| ClaI | ATCGAT | 1 cut(s) | 580 |
| Csp6I | GTAC | 1 cut(s) | 165 |
| CviAII | CATG | 7 cut(s) | 64, 176, 236, 293, 458, 473, 487 |
| CviJI | RGCY | 7 cut(s) | 103, 227, 271, 471, 504, 635, 737 |
| CviKI_1 | RGCY | 7 cut(s) | 103, 227, 271, 471, 504, 635, 737 |
| CviQI | GTAC | 1 cut(s) | 165 |
| DdeI | CTNAG | 4 cut(s) | 228, 282, 342, 662 |
| DinI | GGCGCC | 1 cut(s) | 484 |
| DpnI | GATC | 2 cut(s) | 188, 589 |
| DpnII | GATC | 2 cut(s) | 186, 587 |
| DraIII | CACNNNGTG | 2 cut(s) | 428, 533 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 369 |
| DriI | GACNNNNNGTC | 1 cut(s) | 86 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 369 |
| EaeI | YGGCCR | 1 cut(s) | 469 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 86 |
| Eco130I | CCWWGG | 3 cut(s) | 472, 486, 515 |
| Eco31I | GGTCTC | 1 cut(s) | 154 |
| Eco47I | GGWCC | 3 cut(s) | 172, 371, 658 |
| Eco57I | CTGAAG | 1 cut(s) | 759 |
| Eco72I | CACGTG | 2 cut(s) | 425, 443 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 389 |
| EcoO109I | RGGNCCY | 1 cut(s) | 658 |
| EcoRII | CCWGG | 1 cut(s) | 466 |
| EcoT14I | CCWWGG | 3 cut(s) | 472, 486, 515 |
| EgeI | GGCGCC | 1 cut(s) | 484 |
| EheI | GGCGCC | 1 cut(s) | 484 |
| ErhI | CCWWGG | 3 cut(s) | 472, 486, 515 |
| FaeI | CATG | 7 cut(s) | 67, 179, 239, 296, 461, 476, 490 |
| FaqI | GGGAC | 2 cut(s) | 375, 671 |
| FatI | CATG | 7 cut(s) | 63, 175, 235, 292, 457, 472, 486 |
| FblI | GTMKAC | 1 cut(s) | 574 |
| Fnu4HI | GCNGC | 2 cut(s) | 636, 762 |
| FokI | GGATG | 1 cut(s) | 770 |
| Fsp4HI | GCNGC | 2 cut(s) | 636, 762 |
| FspBI | CTAG | 2 cut(s) | 516, 632 |
| GlaI | GCGC | 2 cut(s) | 15, 484 |
| GluI | GCNGC | 2 cut(s) | 636, 762 |
| HaeII | RGCGCY | 1 cut(s) | 486 |
| HaeIII | GGCC | 1 cut(s) | 471 |
| HhaI | GCGC | 2 cut(s) | 16, 485 |
| Hin1I | GRCGYC | 1 cut(s) | 483 |
| Hin1II | CATG | 7 cut(s) | 67, 179, 239, 296, 461, 476, 490 |
| Hin6I | GCGC | 2 cut(s) | 14, 483 |
| HinP1I | GCGC | 2 cut(s) | 14, 483 |
| HincII | GTYRAC | 1 cut(s) | 575 |
| HindII | GTYRAC | 1 cut(s) | 575 |
| HphI | GGTGA | 3 cut(s) | 488, 709, 713 |
| Hpy166II | GTNNAC | 6 cut(s) | 80, 527, 536, 575, 679, 751 |
| Hpy188I | TCNGA | 1 cut(s) | 43 |
| Hpy188III | TCNNGA | 3 cut(s) | 190, 250, 293 |
| Hpy8I | GTNNAC | 6 cut(s) | 80, 527, 536, 575, 679, 751 |
| HpyAV | CCTTC | 3 cut(s) | 136, 389, 541 |
| HpyCH4IV | ACGT | 5 cut(s) | 364, 424, 442, 523, 532 |
| HpyCH4V | TGCA | 5 cut(s) | 536, 615, 638, 686, 751 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 331, 621 |
| HpyF3I | CTNAG | 4 cut(s) | 228, 282, 342, 662 |
| HpySE526I | ACGT | 5 cut(s) | 364, 424, 442, 523, 532 |
| Hsp92I | GRCGYC | 1 cut(s) | 483 |
| Hsp92II | CATG | 7 cut(s) | 67, 179, 239, 296, 461, 476, 490 |
| HspAI | GCGC | 2 cut(s) | 14, 483 |
| KasI | GGCGCC | 1 cut(s) | 482 |
| Kzo9I | GATC | 2 cut(s) | 186, 587 |
| LmnI | GCTCC | 2 cut(s) | 331, 509 |
| LpnPI | CCDG | 7 cut(s) | 99, 165, 453, 480, 631, 640, 674 |
| Lsp1109I | GCAGC | 1 cut(s) | 622 |
| LweI | GCATC | 1 cut(s) | 748 |
| MaeI | CTAG | 2 cut(s) | 516, 632 |
| MaeII | ACGT | 5 cut(s) | 364, 424, 442, 523, 532 |
| MaeIII | GTNAC | 1 cut(s) | 88 |
| MalI | GATC | 2 cut(s) | 188, 589 |
| MbiI | CCGCTC | 1 cut(s) | 334 |
| MboI | GATC | 2 cut(s) | 186, 587 |
| MboII | GAAGA | 6 cut(s) | 41, 701, 704, 707, 716, 752 |
| MfeI | CAATTG | 2 cut(s) | 141, 542 |
| MhlI | GDGCHC | 3 cut(s) | 327, 538, 753 |
| MlsI | TGGCCA | 1 cut(s) | 471 |
| MluCI | AATT | 8 cut(s) | 37, 71, 105, 141, 256, 262, 301, 542 |
| MluNI | TGGCCA | 1 cut(s) | 471 |
| Mly113I | GGCGCC | 1 cut(s) | 483 |
| MmeI | TCCRAC | 1 cut(s) | 531 |
| Mox20I | TGGCCA | 1 cut(s) | 471 |
| MroXI | GAANNNNTTC | 1 cut(s) | 48 |
| MscI | TGGCCA | 1 cut(s) | 471 |
| MseI | TTAA | 3 cut(s) | 68, 711, 775 |
| MslI | CAYNNNNRTG | 6 cut(s) | 210, 248, 477, 564, 582, 756 |
| Msp20I | TGGCCA | 1 cut(s) | 471 |
| MspR9I | CCNGG | 1 cut(s) | 468 |
| MunI | CAATTG | 2 cut(s) | 141, 542 |
| MvaI | CCWGG | 1 cut(s) | 468 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 331, 621 |
| NarI | GGCGCC | 1 cut(s) | 483 |
| NcoI | CCATGG | 2 cut(s) | 472, 486 |
| NdeII | GATC | 2 cut(s) | 186, 587 |
| NlaIII | CATG | 7 cut(s) | 67, 179, 239, 296, 461, 476, 490 |
| NlaIV | GGNNCC | 5 cut(s) | 338, 372, 484, 505, 659 |
| NmuCI | GTSAC | 1 cut(s) | 88 |
| PagI | TCATGA | 1 cut(s) | 292 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 529 |
| PdmI | GAANNNNTTC | 1 cut(s) | 48 |
| PkrI | GCNGC | 2 cut(s) | 637, 763 |
| PluTI | GGCGCC | 1 cut(s) | 486 |
| PmaCI | CACGTG | 2 cut(s) | 425, 443 |
| PmlI | CACGTG | 2 cut(s) | 425, 443 |
| Ppu21I | YACGTR | 2 cut(s) | 425, 443 |
| PpuMI | RGGWCCY | 1 cut(s) | 658 |
| PsiI | TTATAA | 2 cut(s) | 261, 306 |
| Psp5II | RGGWCCY | 1 cut(s) | 658 |
| Psp6I | CCWGG | 1 cut(s) | 466 |
| PspCI | CACGTG | 2 cut(s) | 425, 443 |
| PspGI | CCWGG | 1 cut(s) | 466 |
| PspN4I | GGNNCC | 5 cut(s) | 338, 372, 484, 505, 659 |
| PspPI | GGNCC | 3 cut(s) | 172, 371, 658 |
| PspPPI | RGGWCCY | 1 cut(s) | 658 |
| RsaI | GTAC | 1 cut(s) | 166 |
| RsaNI | GTAC | 1 cut(s) | 165 |
| RseI | CAYNNNNRTG | 6 cut(s) | 210, 248, 477, 564, 582, 756 |
| SalI | GTCGAC | 1 cut(s) | 573 |
| SaqAI | TTAA | 3 cut(s) | 68, 711, 775 |
| SatI | GCNGC | 2 cut(s) | 636, 762 |
| Sau3AI | GATC | 2 cut(s) | 186, 587 |
| Sau96I | GGNCC | 3 cut(s) | 172, 371, 658 |
| ScrFI | CCNGG | 1 cut(s) | 468 |
| SduI | GDGCHC | 3 cut(s) | 327, 538, 753 |
| SfaNI | GCATC | 1 cut(s) | 748 |
| SfoI | GGCGCC | 1 cut(s) | 484 |
| SinI | GGWCC | 3 cut(s) | 172, 371, 658 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 210, 248, 477, 564, 582, 756 |
| Sse9I | AATT | 8 cut(s) | 37, 71, 105, 141, 256, 262, 301, 542 |
| SsiI | CCGC | 5 cut(s) | 334, 382, 403, 416, 762 |
| SspDI | GGCGCC | 1 cut(s) | 482 |
| SspMI | CTAG | 2 cut(s) | 516, 632 |
| StyD4I | CCNGG | 1 cut(s) | 466 |
| StyI | CCWWGG | 3 cut(s) | 472, 486, 515 |
| TaiI | ACGT | 5 cut(s) | 367, 427, 445, 526, 535 |
| TaqI | TCGA | 2 cut(s) | 574, 580 |
| TasI | AATT | 8 cut(s) | 37, 71, 105, 141, 256, 262, 301, 542 |
| TauI | GCSGC | 1 cut(s) | 764 |
| Tru1I | TTAA | 3 cut(s) | 68, 711, 775 |
| Tru9I | TTAA | 3 cut(s) | 68, 711, 775 |
| TseFI | GTSAC | 1 cut(s) | 88 |
| TseI | GCWGC | 1 cut(s) | 635 |
| Tsp45I | GTSAC | 1 cut(s) | 88 |
| TspDTI | ATGAA | 3 cut(s) | 188, 281, 759 |
| TspGWI | ACGGA | 1 cut(s) | 199 |
| VneI | GTGCAC | 2 cut(s) | 534, 749 |
| VpaK11BI | GGWCC | 3 cut(s) | 172, 371, 658 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 389 |
| XapI | RAATTY | 1 cut(s) | 71 |
| XmaJI | CCTAGG | 1 cut(s) | 515 |
| XmiI | GTMKAC | 1 cut(s) | 574 |
| XmnI | GAANNNNTTC | 1 cut(s) | 48 |
| XspI | CTAG | 2 cut(s) | 516, 632 |