No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 825 |
| Acc36I | ACCTGC | 1 cut(s) | 22 |
| AccB1I | GGYRCC | 1 cut(s) | 1614 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 996 |
| AccIII | TCCGGA | 2 cut(s) | 130, 1579 |
| AciI | CCGC | 5 cut(s) | 41, 323, 968, 1078, 1360 |
| AclI | AACGTT | 1 cut(s) | 800 |
| AclWI | GGATC | 5 cut(s) | 92, 105, 141, 1481, 1551 |
| AcvI | CACGTG | 1 cut(s) | 763 |
| AcyI | GRCGYC | 2 cut(s) | 822, 1615 |
| AfeI | AGCGCT | 1 cut(s) | 330 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 107, 996, 1610 |
| AgeI | ACCGGT | 1 cut(s) | 203 |
| AgsI | TTSAA | 1 cut(s) | 461 |
| AjiI | CACGTC | 3 cut(s) | 895, 919, 1135 |
| AjnI | CCWGG | 3 cut(s) | 113, 787, 1128 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 567, 599, 1287, 1319 |
| AleI | CACNNNNGTG | 1 cut(s) | 861 |
| AluBI | AGCT | 6 cut(s) | 382, 924, 1154, 1160, 1492, 1502 |
| AluI | AGCT | 6 cut(s) | 382, 924, 1154, 1160, 1492, 1502 |
| Alw21I | GWGCWC | 2 cut(s) | 1494, 1603 |
| Alw26I | GTCTC | 4 cut(s) | 140, 1103, 1291, 1426 |
| AlwI | GGATC | 5 cut(s) | 92, 105, 141, 1481, 1551 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 788 |
| Ama87I | CYCGRG | 1 cut(s) | 1118 |
| Aor13HI | TCCGGA | 2 cut(s) | 130, 1579 |
| Aor51HI | AGCGCT | 1 cut(s) | 330 |
| AoxI | GGCC | 5 cut(s) | 77, 110, 368, 521, 790 |
| ApaI | GGGCCC | 1 cut(s) | 114 |
| ApeKI | GCWGC | 5 cut(s) | 379, 539, 782, 888, 1178 |
| AseI | ATTAAT | 1 cut(s) | 345 |
| AsiGI | ACCGGT | 1 cut(s) | 203 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1575 |
| AspA2I | CCTAGG | 1 cut(s) | 518 |
| AspLEI | GCGC | 3 cut(s) | 331, 915, 1617 |
| AspS9I | GGNCC | 7 cut(s) | 77, 110, 111, 292, 369, 425, 791 |
| AsuC2I | CCSGG | 1 cut(s) | 1106 |
| AsuHPI | GGTGA | 2 cut(s) | 193, 346 |
| AvaI | CYCGRG | 1 cut(s) | 1118 |
| AvaII | GGWCC | 2 cut(s) | 292, 425 |
| AvrII | CCTAGG | 1 cut(s) | 518 |
| AxyI | CCTNAGG | 1 cut(s) | 834 |
| BaeGI | GKGCMC | 1 cut(s) | 114 |
| BamHI | GGATCC | 1 cut(s) | 97 |
| BanI | GGYRCC | 1 cut(s) | 1614 |
| BanII | GRGCYC | 3 cut(s) | 114, 690, 1494 |
| BauI | CACGAG | 1 cut(s) | 1487 |
| BbrPI | CACGTG | 1 cut(s) | 763 |
| BbsI | GAAGAC | 4 cut(s) | 556, 910, 1272, 1406 |
| Bbv12I | GWGCWC | 2 cut(s) | 1494, 1603 |
| BbvCI | CCTCAGC | 2 cut(s) | 315, 383 |
| BbvI | GCAGC | 5 cut(s) | 391, 551, 794, 900, 1190 |
| BccI | CCATC | 6 cut(s) | 937, 1056, 1091, 1214, 1341, 1426 |
| BceAI | ACGGC | 1 cut(s) | 383 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 248, 282 |
| BciT130I | CCWGG | 3 cut(s) | 115, 789, 1130 |
| BclI | TGATCA | 1 cut(s) | 193 |
| BcnI | CCSGG | 1 cut(s) | 1106 |
| BcoDI | GTCTC | 4 cut(s) | 140, 1103, 1291, 1426 |
| BfaI | CTAG | 4 cut(s) | 435, 519, 1125, 1337 |
| BfoI | RGCGCY | 3 cut(s) | 332, 916, 1618 |
| BfuAI | ACCTGC | 1 cut(s) | 22 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 529, 1187 |
| BglII | AGATCT | 4 cut(s) | 140, 163, 437, 625 |
| BisI | GCNGC | 5 cut(s) | 380, 540, 783, 889, 1179 |
| BlnI | CCTAGG | 1 cut(s) | 518 |
| BlsI | GCNGC | 5 cut(s) | 381, 541, 784, 890, 1180 |
| Bme1390I | CCNGG | 4 cut(s) | 115, 789, 1106, 1130 |
| Bme18I | GGWCC | 2 cut(s) | 292, 425 |
| BmeT110I | CYCGRG | 1 cut(s) | 1118 |
| BmgBI | CACGTC | 3 cut(s) | 895, 919, 1135 |
| BmgT120I | GGNCC | 7 cut(s) | 77, 110, 111, 292, 369, 425, 791 |
| BmiI | GGNNCC | 7 cut(s) | 99, 111, 112, 321, 389, 427, 1616 |
| BmrFI | CCNGG | 4 cut(s) | 115, 789, 1106, 1130 |
| BmrI | ACTGGG | 1 cut(s) | 810 |
| BmsI | GCATC | 2 cut(s) | 284, 1093 |
| BmuI | ACTGGG | 1 cut(s) | 810 |
| BpiI | GAAGAC | 4 cut(s) | 556, 910, 1272, 1406 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 612, 644 |
| Bpu10I | CCTNAGC | 3 cut(s) | 315, 383, 925 |
| BpuEI | CTTGAG | 3 cut(s) | 653, 1073, 1140 |
| BpuMI | CCSGG | 1 cut(s) | 1106 |
| BsaAI | YACGTR | 2 cut(s) | 763, 871 |
| BsaBI | GATNNNNATC | 1 cut(s) | 96 |
| BsaHI | GRCGYC | 2 cut(s) | 822, 1615 |
| BsaI | GGTCTC | 1 cut(s) | 1291 |
| BsaJI | CCNNGG | 3 cut(s) | 113, 518, 1560 |
| BsaWI | WCCGGW | 4 cut(s) | 130, 203, 950, 1579 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 472, 487, 502, 517, 579, 609 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 107, 996, 1610 |
| Bse118I | RCCGGY | 2 cut(s) | 34, 203 |
| Bse1I | ACTGG | 3 cut(s) | 302, 816, 1048 |
| Bse21I | CCTNAGG | 1 cut(s) | 834 |
| Bse8I | GATNNNNATC | 1 cut(s) | 96 |
| BseAI | TCCGGA | 2 cut(s) | 130, 1579 |
| BseBI | CCWGG | 3 cut(s) | 115, 789, 1130 |
| BseDI | CCNNGG | 3 cut(s) | 113, 518, 1560 |
| BseGI | GGATG | 5 cut(s) | 269, 1005, 1209, 1237, 1530 |
| BseJI | GATNNNNATC | 1 cut(s) | 96 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 107, 996, 1610 |
| BseMII | CTCAG | 6 cut(s) | 135, 306, 374, 432, 848, 939 |
| BseNI | ACTGG | 3 cut(s) | 302, 816, 1048 |
| BseSI | GKGCMC | 1 cut(s) | 114 |
| BseXI | GCAGC | 5 cut(s) | 391, 551, 794, 900, 1190 |
| BseYI | CCCAGC | 1 cut(s) | 909 |
| BsgI | GTGCAG | 1 cut(s) | 278 |
| Bsh1285I | CGRYCG | 1 cut(s) | 968 |
| BshFI | GGCC | 5 cut(s) | 79, 112, 370, 523, 792 |
| BshNI | GGYRCC | 1 cut(s) | 1614 |
| BshTI | ACCGGT | 1 cut(s) | 203 |
| BsiEI | CGRYCG | 1 cut(s) | 968 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1494, 1603 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1118 |
| BsiSI | CCGG | 6 cut(s) | 35, 131, 204, 951, 1106, 1580 |
| BslFI | GGGAC | 1 cut(s) | 77 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 107, 996, 1610 |
| BsmAI | GTCTC | 4 cut(s) | 140, 1103, 1291, 1426 |
| BsmBI | CGTCTC | 2 cut(s) | 1103, 1426 |
| BsmFI | GGGAC | 1 cut(s) | 77 |
| BsnI | GGCC | 5 cut(s) | 79, 112, 370, 523, 792 |
| Bso31I | GGTCTC | 1 cut(s) | 1291 |
| BsoBI | CYCGRG | 1 cut(s) | 1118 |
| Bsp120I | GGGCCC | 1 cut(s) | 110 |
| Bsp1286I | GDGCHC | 4 cut(s) | 114, 690, 1494, 1603 |
| Bsp13I | TCCGGA | 2 cut(s) | 130, 1579 |
| BspACI | CCGC | 5 cut(s) | 41, 323, 968, 1078, 1360 |
| BspANI | GGCC | 5 cut(s) | 79, 112, 370, 523, 792 |
| BspCNI | CTCAG | 6 cut(s) | 136, 307, 375, 433, 847, 938 |
| BspEI | TCCGGA | 2 cut(s) | 130, 1579 |
| BspLI | GGNNCC | 7 cut(s) | 99, 111, 112, 321, 389, 427, 1616 |
| BspMI | ACCTGC | 1 cut(s) | 22 |
| BspPI | GGATC | 5 cut(s) | 92, 105, 141, 1481, 1551 |
| BspT107I | GGYRCC | 1 cut(s) | 1614 |
| BspTNI | GGTCTC | 1 cut(s) | 1291 |
| BsrFI | RCCGGY | 2 cut(s) | 34, 203 |
| BsrI | ACTGG | 3 cut(s) | 302, 816, 1048 |
| BssAI | RCCGGY | 2 cut(s) | 34, 203 |
| BssECI | CCNNGG | 3 cut(s) | 113, 518, 1560 |
| BssNI | GRCGYC | 2 cut(s) | 822, 1615 |
| BssSI | CACGAG | 1 cut(s) | 1487 |
| BssT1I | CCWWGG | 1 cut(s) | 518 |
| Bst2BI | CACGAG | 1 cut(s) | 1487 |
| Bst2UI | CCWGG | 3 cut(s) | 115, 789, 1130 |
| Bst4CI | ACNGT | 3 cut(s) | 212, 939, 1144 |
| Bst6I | CTCTTC | 1 cut(s) | 676 |
| BstACI | GRCGYC | 2 cut(s) | 822, 1615 |
| BstBAI | YACGTR | 2 cut(s) | 763, 871 |
| BstC8I | GCNNGC | 4 cut(s) | 312, 327, 1082, 1152 |
| BstDSI | CCRYGG | 1 cut(s) | 1560 |
| BstF5I | GGATG | 5 cut(s) | 269, 1005, 1209, 1237, 1530 |
| BstH2I | RGCGCY | 3 cut(s) | 332, 916, 1618 |
| BstHHI | GCGC | 3 cut(s) | 331, 915, 1617 |
| BstMAI | GTCTC | 4 cut(s) | 140, 1103, 1291, 1426 |
| BstMCI | CGRYCG | 1 cut(s) | 968 |
| BstNI | CCWGG | 3 cut(s) | 115, 789, 1130 |
| BstSCI | CCNGG | 4 cut(s) | 113, 787, 1104, 1128 |
| BstSLI | GKGCMC | 1 cut(s) | 114 |
| BstSNI | TACGTA | 1 cut(s) | 871 |
| BstV1I | GCAGC | 5 cut(s) | 391, 551, 794, 900, 1190 |
| BstV2I | GAAGAC | 4 cut(s) | 556, 910, 1272, 1406 |
| BstX2I | RGATCY | 7 cut(s) | 97, 133, 140, 163, 437, 625, 1556 |
| BstYI | RGATCY | 7 cut(s) | 97, 133, 140, 163, 437, 625, 1556 |
| Bsu36I | CCTNAGG | 1 cut(s) | 834 |
| BsuRI | GGCC | 5 cut(s) | 79, 112, 370, 523, 792 |
| BtgI | CCRYGG | 1 cut(s) | 1560 |
| BtgZI | GCGATG | 1 cut(s) | 1400 |
| BtrI | CACGTC | 3 cut(s) | 895, 919, 1135 |
| BtsCI | GGATG | 5 cut(s) | 269, 1005, 1209, 1237, 1530 |
| BtsI | GCAGTG | 3 cut(s) | 261, 808, 850 |
| BtsIMutI | CAGTG | 5 cut(s) | 261, 295, 808, 823, 850 |
| BveI | ACCTGC | 1 cut(s) | 22 |
| Cac8I | GCNNGC | 4 cut(s) | 312, 327, 1082, 1152 |
| CaiI | CAGNNNCTG | 1 cut(s) | 788 |
| CfoI | GCGC | 3 cut(s) | 331, 915, 1617 |
| Cfr10I | RCCGGY | 2 cut(s) | 34, 203 |
| Cfr13I | GGNCC | 7 cut(s) | 77, 110, 111, 292, 369, 425, 791 |
| CseI | GACGC | 1 cut(s) | 865 |
| CspAI | ACCGGT | 1 cut(s) | 203 |
| CviAII | CATG | 2 cut(s) | 46, 1523 |
| DinI | GGCGCC | 1 cut(s) | 1616 |
| Eam1104I | CTCTTC | 1 cut(s) | 676 |
| EarI | CTCTTC | 1 cut(s) | 676 |
| EciI | GGCGGA | 1 cut(s) | 1067 |
| Ecl136II | GAGCTC | 1 cut(s) | 1492 |
| Eco105I | TACGTA | 1 cut(s) | 871 |
| Eco130I | CCWWGG | 1 cut(s) | 518 |
| Eco24I | GRGCYC | 3 cut(s) | 114, 690, 1494 |
| Eco31I | GGTCTC | 1 cut(s) | 1291 |
| Eco32I | GATATC | 2 cut(s) | 662, 1055 |
| Eco47I | GGWCC | 2 cut(s) | 292, 425 |
| Eco47III | AGCGCT | 1 cut(s) | 330 |
| Eco53kI | GAGCTC | 1 cut(s) | 1492 |
| Eco72I | CACGTG | 1 cut(s) | 763 |
| Eco81I | CCTNAGG | 1 cut(s) | 834 |
| Eco88I | CYCGRG | 1 cut(s) | 1118 |
| EcoICRI | GAGCTC | 1 cut(s) | 1492 |
| EcoO109I | RGGNCCY | 1 cut(s) | 110 |
| EcoRII | CCWGG | 3 cut(s) | 113, 787, 1128 |
| EcoRV | GATATC | 2 cut(s) | 662, 1055 |
| EcoT14I | CCWWGG | 1 cut(s) | 518 |
| EcoT38I | GRGCYC | 3 cut(s) | 114, 690, 1494 |
| EgeI | GGCGCC | 1 cut(s) | 1616 |
| EheI | GGCGCC | 1 cut(s) | 1616 |
| ErhI | CCWWGG | 1 cut(s) | 518 |
| Esp3I | CGTCTC | 2 cut(s) | 1103, 1426 |
| FaeI | CATG | 2 cut(s) | 49, 1526 |
| FaqI | GGGAC | 1 cut(s) | 77 |
| FatI | CATG | 2 cut(s) | 45, 1522 |
| FauNDI | CATATG | 2 cut(s) | 250, 1227 |
| FbaI | TGATCA | 1 cut(s) | 193 |
| Fnu4HI | GCNGC | 5 cut(s) | 380, 540, 783, 889, 1179 |
| FokI | GGATG | 5 cut(s) | 276, 1012, 1196, 1244, 1517 |
| FriOI | GRGCYC | 3 cut(s) | 114, 690, 1494 |
| Fsp4HI | GCNGC | 5 cut(s) | 380, 540, 783, 889, 1179 |
| FspBI | CTAG | 4 cut(s) | 435, 519, 1125, 1337 |
| GlaI | GCGC | 3 cut(s) | 330, 914, 1616 |
| GluI | GCNGC | 5 cut(s) | 380, 540, 783, 889, 1179 |
| GsaI | CCCAGC | 1 cut(s) | 913 |
| HaeII | RGCGCY | 3 cut(s) | 332, 916, 1618 |
| HaeIII | GGCC | 5 cut(s) | 79, 112, 370, 523, 792 |
| HapII | CCGG | 6 cut(s) | 35, 131, 204, 951, 1106, 1580 |
| HgaI | GACGC | 1 cut(s) | 865 |
| HhaI | GCGC | 3 cut(s) | 331, 915, 1617 |
| Hin1I | GRCGYC | 2 cut(s) | 822, 1615 |
| Hin1II | CATG | 2 cut(s) | 49, 1526 |
| Hin6I | GCGC | 3 cut(s) | 329, 913, 1615 |
| HinP1I | GCGC | 3 cut(s) | 329, 913, 1615 |
| HincII | GTYRAC | 2 cut(s) | 932, 956 |
| HindII | GTYRAC | 2 cut(s) | 932, 956 |
| HindIII | AAGCTT | 1 cut(s) | 1158 |
| HinfI | GANTC | 9 cut(s) | 104, 399, 1101, 1114, 1219, 1235, 1319, 1402, 1583 |
| HpaII | CCGG | 6 cut(s) | 35, 131, 204, 951, 1106, 1580 |
| HphI | GGTGA | 2 cut(s) | 193, 346 |
| Hpy166II | GTNNAC | 2 cut(s) | 932, 956 |
| Hpy188I | TCNGA | 4 cut(s) | 145, 425, 442, 965 |
| Hpy8I | GTNNAC | 2 cut(s) | 932, 956 |
| Hpy99I | CGWCG | 2 cut(s) | 417, 979 |
| HpyAV | CCTTC | 3 cut(s) | 768, 1269, 1423 |
| HpyCH4III | ACNGT | 3 cut(s) | 212, 939, 1144 |
| HpyCH4IV | ACGT | 9 cut(s) | 762, 800, 822, 858, 870, 894, 918, 1134, 1311 |
| HpyCH4V | TGCA | 6 cut(s) | 228, 254, 259, 539, 1427, 1466 |
| HpySE526I | ACGT | 9 cut(s) | 762, 800, 822, 858, 870, 894, 918, 1134, 1311 |
| Hsp92I | GRCGYC | 2 cut(s) | 822, 1615 |
| Hsp92II | CATG | 2 cut(s) | 49, 1526 |
| HspAI | GCGC | 3 cut(s) | 329, 913, 1615 |
| KasI | GGCGCC | 1 cut(s) | 1614 |
| Kpn2I | TCCGGA | 2 cut(s) | 130, 1579 |
| Ksp22I | TGATCA | 1 cut(s) | 193 |
| LmnI | GCTCC | 5 cut(s) | 393, 779, 1033, 1499, 1606 |
| Lsp1109I | GCAGC | 5 cut(s) | 391, 551, 794, 900, 1190 |
| LweI | GCATC | 2 cut(s) | 284, 1093 |
| MaeI | CTAG | 4 cut(s) | 435, 519, 1125, 1337 |
| MaeII | ACGT | 9 cut(s) | 762, 800, 822, 858, 870, 894, 918, 1134, 1311 |
| MaeIII | GTNAC | 9 cut(s) | 206, 218, 244, 392, 578, 740, 818, 1004, 1316 |
| MfeI | CAATTG | 2 cut(s) | 525, 736 |
| MflI | RGATCY | 7 cut(s) | 97, 133, 140, 163, 437, 625, 1556 |
| MhlI | GDGCHC | 4 cut(s) | 114, 690, 1494, 1603 |
| MluCI | AATT | 6 cut(s) | 525, 736, 1016, 1452, 1549, 1588 |
| Mly113I | GGCGCC | 1 cut(s) | 1615 |
| MlyI | GAGTC | 3 cut(s) | 1213, 1313, 1396 |
| MmeI | TCCRAC | 5 cut(s) | 69, 388, 530, 988, 1010 |
| MroI | TCCGGA | 2 cut(s) | 130, 1579 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1575 |
| MseI | TTAA | 1 cut(s) | 345 |
| MslI | CAYNNNNRTG | 4 cut(s) | 861, 1214, 1230, 1535 |
| MspA1I | CMGCKG | 1 cut(s) | 382 |
| MspI | CCGG | 6 cut(s) | 35, 131, 204, 951, 1106, 1580 |
| MspR9I | CCNGG | 4 cut(s) | 115, 789, 1106, 1130 |
| MunI | CAATTG | 2 cut(s) | 525, 736 |
| MvaI | CCWGG | 3 cut(s) | 115, 789, 1130 |
| NarI | GGCGCC | 1 cut(s) | 1615 |
| NciI | CCSGG | 1 cut(s) | 1106 |
| NdeI | CATATG | 2 cut(s) | 250, 1227 |
| NlaIII | CATG | 2 cut(s) | 49, 1526 |
| NlaIV | GGNNCC | 7 cut(s) | 99, 111, 112, 321, 389, 427, 1616 |
| NmeAIII | GCCGAG | 1 cut(s) | 380 |
| NmuCI | GTSAC | 4 cut(s) | 244, 392, 818, 1316 |
| OliI | CACNNNNGTG | 1 cut(s) | 861 |
| PaeR7I | CTCGAG | 1 cut(s) | 1118 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1575 |
| PfeI | GAWTC | 6 cut(s) | 104, 399, 1101, 1114, 1235, 1583 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 996 |
| PfoI | TCCNGGA | 1 cut(s) | 1104 |
| PinAI | ACCGGT | 1 cut(s) | 203 |
| PkrI | GCNGC | 5 cut(s) | 381, 541, 784, 890, 1180 |
| PleI | GAGTC | 3 cut(s) | 1213, 1313, 1396 |
| PluTI | GGCGCC | 1 cut(s) | 1618 |
| PmaCI | CACGTG | 1 cut(s) | 763 |
| PmlI | CACGTG | 1 cut(s) | 763 |
| PpsI | GAGTC | 3 cut(s) | 1213, 1313, 1396 |
| Ppu21I | YACGTR | 2 cut(s) | 763, 871 |
| PshBI | ATTAAT | 1 cut(s) | 345 |
| Psp124BI | GAGCTC | 1 cut(s) | 1494 |
| Psp1406I | AACGTT | 1 cut(s) | 800 |
| Psp6I | CCWGG | 3 cut(s) | 113, 787, 1128 |
| PspCI | CACGTG | 1 cut(s) | 763 |
| PspFI | CCCAGC | 1 cut(s) | 909 |
| PspGI | CCWGG | 3 cut(s) | 113, 787, 1128 |
| PspN4I | GGNNCC | 7 cut(s) | 99, 111, 112, 321, 389, 427, 1616 |
| PspOMI | GGGCCC | 1 cut(s) | 110 |
| PspPI | GGNCC | 7 cut(s) | 77, 110, 111, 292, 369, 425, 791 |
| PstNI | CAGNNNCTG | 1 cut(s) | 788 |
| PsuI | RGATCY | 7 cut(s) | 97, 133, 140, 163, 437, 625, 1556 |
| PvuII | CAGCTG | 1 cut(s) | 382 |
| RseI | CAYNNNNRTG | 4 cut(s) | 861, 1214, 1230, 1535 |
| SacI | GAGCTC | 1 cut(s) | 1494 |
| SaqAI | TTAA | 1 cut(s) | 345 |
| SatI | GCNGC | 5 cut(s) | 380, 540, 783, 889, 1179 |
| Sau96I | GGNCC | 7 cut(s) | 77, 110, 111, 292, 369, 425, 791 |
| SchI | GAGTC | 3 cut(s) | 1213, 1313, 1396 |
| ScrFI | CCNGG | 4 cut(s) | 115, 789, 1106, 1130 |
| SduI | GDGCHC | 4 cut(s) | 114, 690, 1494, 1603 |
| SfaNI | GCATC | 2 cut(s) | 284, 1093 |
| SfoI | GGCGCC | 1 cut(s) | 1616 |
| Sfr274I | CTCGAG | 1 cut(s) | 1118 |
| SinI | GGWCC | 2 cut(s) | 292, 425 |
| SlaI | CTCGAG | 1 cut(s) | 1118 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 861, 1214, 1230, 1535 |
| SmlI | CTYRAG | 4 cut(s) | 668, 1088, 1118, 1155 |
| SmoI | CTYRAG | 4 cut(s) | 668, 1088, 1118, 1155 |
| SnaBI | TACGTA | 1 cut(s) | 871 |
| Sse9I | AATT | 6 cut(s) | 525, 736, 1016, 1452, 1549, 1588 |
| SsiI | CCGC | 5 cut(s) | 41, 323, 968, 1078, 1360 |
| SspDI | GGCGCC | 1 cut(s) | 1614 |
| SspMI | CTAG | 4 cut(s) | 435, 519, 1125, 1337 |
| SstI | GAGCTC | 1 cut(s) | 1494 |
| StyD4I | CCNGG | 4 cut(s) | 113, 787, 1104, 1128 |
| StyI | CCWWGG | 1 cut(s) | 518 |
| TaaI | ACNGT | 3 cut(s) | 212, 939, 1144 |
| TaiI | ACGT | 9 cut(s) | 765, 803, 825, 861, 873, 897, 921, 1137, 1314 |
| TaqI | TCGA | 6 cut(s) | 349, 412, 1119, 1293, 1450, 1553 |
| TasI | AATT | 6 cut(s) | 525, 736, 1016, 1452, 1549, 1588 |
| TfiI | GAWTC | 6 cut(s) | 104, 399, 1101, 1114, 1235, 1583 |
| Tru1I | TTAA | 1 cut(s) | 345 |
| Tru9I | TTAA | 1 cut(s) | 345 |
| TscAI | CASTG | 5 cut(s) | 261, 302, 815, 823, 857 |
| TseFI | GTSAC | 4 cut(s) | 244, 392, 818, 1316 |
| TseI | GCWGC | 5 cut(s) | 379, 539, 782, 888, 1178 |
| Tsp45I | GTSAC | 4 cut(s) | 244, 392, 818, 1316 |
| TspDTI | ATGAA | 3 cut(s) | 1271, 1275, 1520 |
| TspGWI | ACGGA | 4 cut(s) | 380, 1304, 1486, 1549 |
| TspRI | CASTG | 5 cut(s) | 261, 302, 815, 823, 857 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 996 |
| VpaK11BI | GGWCC | 2 cut(s) | 292, 425 |
| VspI | ATTAAT | 1 cut(s) | 345 |
| XbaI | TCTAGA | 1 cut(s) | 434 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 993 |
| XhoI | CTCGAG | 1 cut(s) | 1118 |
| XmaJI | CCTAGG | 1 cut(s) | 518 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1575 |
| XspI | CTAG | 4 cut(s) | 435, 519, 1125, 1337 |
| ZraI | GACGTC | 1 cut(s) | 823 |