Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 131 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1908 |
| Acc36I | ACCTGC | 1 cut(s) | 644 |
| AccB1I | GGYRCC | 3 cut(s) | 517, 2021, 2096 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 361 |
| AccI | GTMKAC | 1 cut(s) | 142 |
| AccII | CGCG | 1 cut(s) | 1101 |
| AccIII | TCCGGA | 1 cut(s) | 1509 |
| AclWI | GGATC | 5 cut(s) | 182, 190, 195, 203, 383 |
| AcoI | YGGCCR | 2 cut(s) | 1017, 1075 |
| AcsI | RAATTY | 3 cut(s) | 14, 1503, 2227 |
| AcuI | CTGAAG | 1 cut(s) | 336 |
| AcyI | GRCGYC | 3 cut(s) | 622, 2148, 2160 |
| AdeI | CACNNNGTG | 1 cut(s) | 1103 |
| AfaI | GTAC | 2 cut(s) | 240, 554 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 361, 653, 1084, 1100, 1238, 1930, 2122 |
| AjnI | CCWGG | 8 cut(s) | 426, 520, 726, 764, 1032, 1617, 1641, 2186 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1800, 1832 |
| AleI | CACNNNNGTG | 1 cut(s) | 705 |
| Alw26I | GTCTC | 2 cut(s) | 1348, 1804 |
| AlwI | GGATC | 5 cut(s) | 182, 190, 195, 203, 383 |
| Ama87I | CYCGRG | 2 cut(s) | 1631, 1668 |
| Aor13HI | TCCGGA | 1 cut(s) | 1509 |
| ApaI | GGGCCC | 2 cut(s) | 1232, 1267 |
| ApeKI | GCWGC | 4 cut(s) | 788, 978, 1280, 1691 |
| ApoI | RAATTY | 3 cut(s) | 14, 1503, 2227 |
| AspA2I | CCTAGG | 2 cut(s) | 2120, 2164 |
| AspLEI | GCGC | 1 cut(s) | 2132 |
| AsuHPI | GGTGA | 7 cut(s) | 67, 200, 989, 1042, 1115, 2173, 2180 |
| AsuII | TTCGAA | 1 cut(s) | 920 |
| AsuNHI | GCTAGC | 1 cut(s) | 2126 |
| AvaI | CYCGRG | 2 cut(s) | 1631, 1668 |
| AvaII | GGWCC | 3 cut(s) | 724, 1091, 1910 |
| AvrII | CCTAGG | 2 cut(s) | 2120, 2164 |
| BaeGI | GKGCMC | 3 cut(s) | 1232, 1267, 1478 |
| BalI | TGGCCA | 1 cut(s) | 1019 |
| BamHI | GGATCC | 2 cut(s) | 187, 195 |
| BanI | GGYRCC | 3 cut(s) | 517, 2021, 2096 |
| BanII | GRGCYC | 4 cut(s) | 73, 80, 1232, 1267 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 984, 1016 |
| BbvCI | CCTCAGC | 1 cut(s) | 735 |
| BbvI | GCAGC | 4 cut(s) | 775, 990, 1292, 1703 |
| BccI | CCATC | 7 cut(s) | 155, 899, 1604, 1854, 2049, 2087, 2150 |
| BceAI | ACGGC | 1 cut(s) | 218 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2086, 2120 |
| BciT130I | CCWGG | 8 cut(s) | 428, 522, 728, 766, 1034, 1619, 1643, 2188 |
| BciVI | GTATCC | 2 cut(s) | 1615, 1885 |
| BclI | TGATCA | 1 cut(s) | 697 |
| BcoDI | GTCTC | 2 cut(s) | 1348, 1804 |
| BfaI | CTAG | 9 cut(s) | 468, 884, 1206, 1268, 1563, 1638, 2121, 2127, 2165 |
| BfmI | CTRYAG | 2 cut(s) | 878, 1330 |
| BfuAI | ACCTGC | 1 cut(s) | 644 |
| BfuI | GTATCC | 2 cut(s) | 1615, 1885 |
| BisI | GCNGC | 5 cut(s) | 789, 815, 979, 1281, 1692 |
| BlnI | CCTAGG | 2 cut(s) | 2120, 2164 |
| BlpI | GCTNAGC | 1 cut(s) | 1134 |
| BlsI | GCNGC | 5 cut(s) | 790, 816, 980, 1282, 1693 |
| Bme1390I | CCNGG | 8 cut(s) | 428, 522, 728, 766, 1034, 1619, 1643, 2188 |
| Bme18I | GGWCC | 3 cut(s) | 724, 1091, 1910 |
| BmeT110I | CYCGRG | 2 cut(s) | 1631, 1668 |
| BmrFI | CCNGG | 8 cut(s) | 428, 522, 728, 766, 1034, 1619, 1643, 2188 |
| BmrI | ACTGGG | 1 cut(s) | 819 |
| BmsI | GCATC | 8 cut(s) | 310, 679, 721, 1032, 1038, 1147, 1606, 2161 |
| BmtI | GCTAGC | 1 cut(s) | 2130 |
| BmuI | ACTGGG | 1 cut(s) | 819 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1152 |
| BpmI | CTGGAG | 3 cut(s) | 121, 633, 1384 |
| Bpu10I | CCTNAGC | 1 cut(s) | 735 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1134 |
| Bpu14I | TTCGAA | 1 cut(s) | 920 |
| BpuEI | CTTGAG | 1 cut(s) | 1586 |
| BsaHI | GRCGYC | 3 cut(s) | 622, 2148, 2160 |
| BsaI | GGTCTC | 2 cut(s) | 1348, 1804 |
| BsaJI | CCNNGG | 8 cut(s) | 191, 200, 426, 1033, 1312, 2120, 2151, 2164 |
| BsaWI | WCCGGW | 2 cut(s) | 853, 1509 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 631, 661 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 361, 653, 1084, 1100, 1238, 1930, 2122 |
| Bse118I | RCCGGY | 2 cut(s) | 1073, 1093 |
| Bse1I | ACTGG | 5 cut(s) | 814, 1391, 1401, 1561, 2273 |
| Bse3DI | GCAATG | 1 cut(s) | 2017 |
| BseAI | TCCGGA | 1 cut(s) | 1509 |
| BseBI | CCWGG | 8 cut(s) | 428, 522, 728, 766, 1034, 1619, 1643, 2188 |
| BseDI | CCNNGG | 8 cut(s) | 191, 200, 426, 1033, 1312, 2120, 2151, 2164 |
| BseGI | GGATG | 8 cut(s) | 166, 241, 736, 1029, 1518, 1750, 1824, 2161 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 361, 653, 1084, 1100, 1238, 1930, 2122 |
| BseMI | GCAATG | 1 cut(s) | 2017 |
| BseMII | CTCAG | 7 cut(s) | 263, 602, 726, 1148, 1287, 2073, 2227 |
| BseNI | ACTGG | 5 cut(s) | 814, 1391, 1401, 1561, 2273 |
| BseRI | GAGGAG | 2 cut(s) | 633, 636 |
| BseSI | GKGCMC | 3 cut(s) | 1232, 1267, 1478 |
| BseX3I | CGGCCG | 1 cut(s) | 1075 |
| BseXI | GCAGC | 4 cut(s) | 775, 990, 1292, 1703 |
| BseYI | CCCAGC | 2 cut(s) | 752, 1284 |
| Bsh1236I | CGCG | 1 cut(s) | 1101 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1078, 1435 |
| BshNI | GGYRCC | 3 cut(s) | 517, 2021, 2096 |
| BsiEI | CGRYCG | 2 cut(s) | 1078, 1435 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1631, 1668 |
| BsiSI | CCGG | 7 cut(s) | 742, 854, 1074, 1078, 1094, 1428, 1510 |
| BslFI | GGGAC | 1 cut(s) | 296 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 361, 653, 1084, 1100, 1238, 1930, 2122 |
| BsmAI | GTCTC | 2 cut(s) | 1348, 1804 |
| BsmFI | GGGAC | 1 cut(s) | 296 |
| Bso31I | GGTCTC | 2 cut(s) | 1348, 1804 |
| BsoBI | CYCGRG | 2 cut(s) | 1631, 1668 |
| Bsp119I | TTCGAA | 1 cut(s) | 920 |
| Bsp120I | GGGCCC | 2 cut(s) | 1228, 1263 |
| Bsp1286I | GDGCHC | 5 cut(s) | 73, 80, 1232, 1267, 1478 |
| Bsp13I | TCCGGA | 1 cut(s) | 1509 |
| Bsp143I | GATC | 8 cut(s) | 187, 195, 367, 388, 632, 697, 1113, 1416 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1134 |
| Bsp19I | CCATGG | 2 cut(s) | 191, 2151 |
| BspCNI | CTCAG | 7 cut(s) | 262, 603, 727, 1147, 1286, 2074, 2226 |
| BspEI | TCCGGA | 1 cut(s) | 1509 |
| BspFNI | CGCG | 1 cut(s) | 1101 |
| BspHI | TCATGA | 1 cut(s) | 1582 |
| BspMAI | CTGCAG | 1 cut(s) | 1334 |
| BspMI | ACCTGC | 1 cut(s) | 644 |
| BspOI | GCTAGC | 1 cut(s) | 2130 |
| BspPI | GGATC | 5 cut(s) | 182, 190, 195, 203, 383 |
| BspQI | GCTCTTC | 1 cut(s) | 1296 |
| BspT104I | TTCGAA | 1 cut(s) | 920 |
| BspT107I | GGYRCC | 3 cut(s) | 517, 2021, 2096 |
| BspTNI | GGTCTC | 2 cut(s) | 1348, 1804 |
| BsrDI | GCAATG | 1 cut(s) | 2017 |
| BsrFI | RCCGGY | 2 cut(s) | 1073, 1093 |
| BsrI | ACTGG | 5 cut(s) | 814, 1391, 1401, 1561, 2273 |
| BssAI | RCCGGY | 2 cut(s) | 1073, 1093 |
| BssECI | CCNNGG | 8 cut(s) | 191, 200, 426, 1033, 1312, 2120, 2151, 2164 |
| BssMI | GATC | 8 cut(s) | 187, 195, 367, 388, 632, 697, 1113, 1416 |
| BssNAI | GTATAC | 1 cut(s) | 143 |
| BssNI | GRCGYC | 3 cut(s) | 622, 2148, 2160 |
| BssT1I | CCWWGG | 5 cut(s) | 191, 1312, 2120, 2151, 2164 |
| Bst1107I | GTATAC | 1 cut(s) | 143 |
| Bst2UI | CCWGG | 8 cut(s) | 428, 522, 728, 766, 1034, 1619, 1643, 2188 |
| Bst4CI | ACNGT | 5 cut(s) | 147, 228, 1008, 1376, 1657 |
| Bst6I | CTCTTC | 2 cut(s) | 1296, 1963 |
| BstACI | GRCGYC | 3 cut(s) | 622, 2148, 2160 |
| BstBI | TTCGAA | 1 cut(s) | 920 |
| BstDSI | CCRYGG | 3 cut(s) | 191, 200, 2151 |
| BstEII | GGTNACC | 2 cut(s) | 995, 1937 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 651 |
| BstF5I | GGATG | 8 cut(s) | 166, 241, 736, 1029, 1518, 1750, 1824, 2161 |
| BstFNI | CGCG | 1 cut(s) | 1101 |
| BstHHI | GCGC | 1 cut(s) | 2132 |
| BstKTI | GATC | 8 cut(s) | 190, 198, 370, 391, 635, 700, 1116, 1419 |
| BstMAI | GTCTC | 2 cut(s) | 1348, 1804 |
| BstMBI | GATC | 8 cut(s) | 187, 195, 367, 388, 632, 697, 1113, 1416 |
| BstMCI | CGRYCG | 2 cut(s) | 1078, 1435 |
| BstNI | CCWGG | 8 cut(s) | 428, 522, 728, 766, 1034, 1619, 1643, 2188 |
| BstNSI | RCATGY | 1 cut(s) | 542 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1152 |
| BstPI | GGTNACC | 2 cut(s) | 995, 1937 |
| BstSCI | CCNGG | 8 cut(s) | 426, 520, 726, 764, 1032, 1617, 1641, 2186 |
| BstSFI | CTRYAG | 2 cut(s) | 878, 1330 |
| BstSLI | GKGCMC | 3 cut(s) | 1232, 1267, 1478 |
| BstUI | CGCG | 1 cut(s) | 1101 |
| BstV1I | GCAGC | 4 cut(s) | 775, 990, 1292, 1703 |
| BstX2I | RGATCY | 2 cut(s) | 187, 195 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 657, 1386 |
| BstYI | RGATCY | 2 cut(s) | 187, 195 |
| BstZ17I | GTATAC | 1 cut(s) | 143 |
| BstZI | CGGCCG | 1 cut(s) | 1075 |
| BsuI | GTATCC | 2 cut(s) | 1615, 1885 |
| BtgI | CCRYGG | 3 cut(s) | 191, 200, 2151 |
| BtsCI | GGATG | 8 cut(s) | 166, 241, 736, 1029, 1518, 1750, 1824, 2161 |
| BtsI | GCAGTG | 3 cut(s) | 1062, 1116, 1327 |
| BtsIMutI | CAGTG | 5 cut(s) | 1004, 1062, 1116, 1327, 1384 |
| BveI | ACCTGC | 1 cut(s) | 644 |
| CciI | TCATGA | 1 cut(s) | 1582 |
| CfoI | GCGC | 1 cut(s) | 2132 |
| Cfr10I | RCCGGY | 2 cut(s) | 1073, 1093 |
| CseI | GACGC | 5 cut(s) | 611, 689, 1286, 2149, 2156 |
| Csp6I | GTAC | 2 cut(s) | 239, 553 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1999, 2034 |
| CviAII | CATG | 8 cut(s) | 192, 539, 543, 953, 989, 1583, 2144, 2152 |
| CviQI | GTAC | 2 cut(s) | 239, 553 |
| DpnI | GATC | 8 cut(s) | 189, 197, 369, 390, 634, 699, 1115, 1418 |
| DpnII | GATC | 8 cut(s) | 187, 195, 367, 388, 632, 697, 1113, 1416 |
| DraI | TTTAAA | 1 cut(s) | 2247 |
| DraIII | CACNNNGTG | 1 cut(s) | 1103 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1908 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1908 |
| EaeI | YGGCCR | 2 cut(s) | 1017, 1075 |
| EagI | CGGCCG | 1 cut(s) | 1075 |
| Eam1104I | CTCTTC | 2 cut(s) | 1296, 1963 |
| EarI | CTCTTC | 2 cut(s) | 1296, 1963 |
| EciI | GGCGGA | 1 cut(s) | 1580 |
| EclXI | CGGCCG | 1 cut(s) | 1075 |
| Eco130I | CCWWGG | 5 cut(s) | 191, 1312, 2120, 2151, 2164 |
| Eco147I | AGGCCT | 1 cut(s) | 464 |
| Eco24I | GRGCYC | 4 cut(s) | 73, 80, 1232, 1267 |
| Eco31I | GGTCTC | 2 cut(s) | 1348, 1804 |
| Eco32I | GATATC | 2 cut(s) | 946, 1568 |
| Eco47I | GGWCC | 3 cut(s) | 724, 1091, 1910 |
| Eco52I | CGGCCG | 1 cut(s) | 1075 |
| Eco57I | CTGAAG | 1 cut(s) | 336 |
| Eco88I | CYCGRG | 2 cut(s) | 1631, 1668 |
| Eco91I | GGTNACC | 2 cut(s) | 995, 1937 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 651 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1264 |
| EcoO65I | GGTNACC | 2 cut(s) | 995, 1937 |
| EcoRII | CCWGG | 8 cut(s) | 426, 520, 726, 764, 1032, 1617, 1641, 2186 |
| EcoRV | GATATC | 2 cut(s) | 946, 1568 |
| EcoT14I | CCWWGG | 5 cut(s) | 191, 1312, 2120, 2151, 2164 |
| EcoT22I | ATGCAT | 1 cut(s) | 544 |
| EcoT38I | GRGCYC | 4 cut(s) | 73, 80, 1232, 1267 |
| ErhI | CCWWGG | 5 cut(s) | 191, 1312, 2120, 2151, 2164 |
| FaeI | CATG | 8 cut(s) | 195, 542, 546, 956, 992, 1586, 2147, 2155 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 28, 60, 539, 571 |
| FaqI | GGGAC | 1 cut(s) | 296 |
| FatI | CATG | 8 cut(s) | 191, 538, 542, 952, 988, 1582, 2143, 2151 |
| FauI | CCCGC | 2 cut(s) | 1219, 1446 |
| FauNDI | CATATG | 1 cut(s) | 1740 |
| FbaI | TGATCA | 1 cut(s) | 697 |
| FblI | GTMKAC | 1 cut(s) | 142 |
| Fnu4HI | GCNGC | 5 cut(s) | 789, 815, 979, 1281, 1692 |
| FokI | GGATG | 8 cut(s) | 173, 248, 743, 1016, 1525, 1757, 1811, 2168 |
| FriOI | GRGCYC | 4 cut(s) | 73, 80, 1232, 1267 |
| Fsp4HI | GCNGC | 5 cut(s) | 789, 815, 979, 1281, 1692 |
| FspBI | CTAG | 9 cut(s) | 468, 884, 1206, 1268, 1563, 1638, 2121, 2127, 2165 |
| GlaI | GCGC | 1 cut(s) | 2131 |
| GluI | GCNGC | 5 cut(s) | 789, 815, 979, 1281, 1692 |
| GsaI | CCCAGC | 2 cut(s) | 756, 1288 |
| GsuI | CTGGAG | 3 cut(s) | 121, 633, 1384 |
| HapII | CCGG | 7 cut(s) | 742, 854, 1074, 1078, 1094, 1428, 1510 |
| HgaI | GACGC | 5 cut(s) | 611, 689, 1286, 2149, 2156 |
| HhaI | GCGC | 1 cut(s) | 2132 |
| Hin1I | GRCGYC | 3 cut(s) | 622, 2148, 2160 |
| Hin1II | CATG | 8 cut(s) | 195, 542, 546, 956, 992, 1586, 2147, 2155 |
| Hin6I | GCGC | 1 cut(s) | 2130 |
| HinP1I | GCGC | 1 cut(s) | 2130 |
| HincII | GTYRAC | 3 cut(s) | 1372, 1392, 1406 |
| HindII | GTYRAC | 3 cut(s) | 1372, 1392, 1406 |
| HindIII | AAGCTT | 2 cut(s) | 37, 801 |
| HpaII | CCGG | 7 cut(s) | 742, 854, 1074, 1078, 1094, 1428, 1510 |
| HphI | GGTGA | 7 cut(s) | 67, 200, 989, 1042, 1115, 2173, 2180 |
| Hpy166II | GTNNAC | 8 cut(s) | 143, 553, 639, 1372, 1392, 1406, 1976, 2110 |
| Hpy188I | TCNGA | 9 cut(s) | 11, 75, 270, 612, 972, 1276, 1451, 1609, 2083 |
| Hpy188III | TCNNGA | 9 cut(s) | 314, 630, 1157, 1510, 1563, 1583, 1631, 1844, 1899 |
| Hpy8I | GTNNAC | 8 cut(s) | 143, 553, 639, 1372, 1392, 1406, 1976, 2110 |
| Hpy99I | CGWCG | 2 cut(s) | 627, 683 |
| HpyCH4III | ACNGT | 5 cut(s) | 147, 228, 1008, 1376, 1657 |
| HpyCH4IV | ACGT | 3 cut(s) | 82, 1903, 1978 |
| HpyCH4V | TGCA | 7 cut(s) | 419, 512, 538, 542, 692, 978, 1332 |
| HpySE526I | ACGT | 3 cut(s) | 82, 1903, 1978 |
| Hsp92I | GRCGYC | 3 cut(s) | 622, 2148, 2160 |
| Hsp92II | CATG | 8 cut(s) | 195, 542, 546, 956, 992, 1586, 2147, 2155 |
| HspAI | GCGC | 1 cut(s) | 2130 |
| Kpn2I | TCCGGA | 1 cut(s) | 1509 |
| Ksp22I | TGATCA | 1 cut(s) | 697 |
| Kzo9I | GATC | 8 cut(s) | 187, 195, 367, 388, 632, 697, 1113, 1416 |
| LguI | GCTCTTC | 1 cut(s) | 1296 |
| LmnI | GCTCC | 5 cut(s) | 76, 835, 856, 1546, 1758 |
| Lsp1109I | GCAGC | 4 cut(s) | 775, 990, 1292, 1703 |
| LweI | GCATC | 8 cut(s) | 310, 679, 721, 1032, 1038, 1147, 1606, 2161 |
| MaeI | CTAG | 9 cut(s) | 468, 884, 1206, 1268, 1563, 1638, 2121, 2127, 2165 |
| MaeII | ACGT | 3 cut(s) | 82, 1903, 1978 |
| MaeIII | GTNAC | 7 cut(s) | 228, 350, 995, 1103, 1517, 1829, 1937 |
| MalI | GATC | 8 cut(s) | 189, 197, 369, 390, 634, 699, 1115, 1418 |
| MboI | GATC | 8 cut(s) | 187, 195, 367, 388, 632, 697, 1113, 1416 |
| MflI | RGATCY | 2 cut(s) | 187, 195 |
| MhlI | GDGCHC | 5 cut(s) | 73, 80, 1232, 1267, 1478 |
| MlsI | TGGCCA | 1 cut(s) | 1019 |
| MluCI | AATT | 8 cut(s) | 14, 271, 330, 487, 973, 1503, 1529, 2227 |
| MluNI | TGGCCA | 1 cut(s) | 1019 |
| MlyI | GAGTC | 6 cut(s) | 634, 1100, 1265, 1726, 1826, 2087 |
| Mox20I | TGGCCA | 1 cut(s) | 1019 |
| Mph1103I | ATGCAT | 1 cut(s) | 544 |
| MroI | TCCGGA | 1 cut(s) | 1509 |
| MscI | TGGCCA | 1 cut(s) | 1019 |
| MseI | TTAA | 7 cut(s) | 329, 347, 603, 663, 669, 888, 2246 |
| MslI | CAYNNNNRTG | 3 cut(s) | 705, 1743, 2046 |
| Msp20I | TGGCCA | 1 cut(s) | 1019 |
| MspA1I | CMGCKG | 1 cut(s) | 788 |
| MspI | CCGG | 7 cut(s) | 742, 854, 1074, 1078, 1094, 1428, 1510 |
| MspR9I | CCNGG | 8 cut(s) | 428, 522, 728, 766, 1034, 1619, 1643, 2188 |
| MvaI | CCWGG | 8 cut(s) | 428, 522, 728, 766, 1034, 1619, 1643, 2188 |
| MvnI | CGCG | 1 cut(s) | 1101 |
| NcoI | CCATGG | 2 cut(s) | 191, 2151 |
| NdeI | CATATG | 1 cut(s) | 1740 |
| NdeII | GATC | 8 cut(s) | 187, 195, 367, 388, 632, 697, 1113, 1416 |
| NheI | GCTAGC | 1 cut(s) | 2126 |
| NlaIII | CATG | 8 cut(s) | 195, 542, 546, 956, 992, 1586, 2147, 2155 |
| NmuCI | GTSAC | 4 cut(s) | 228, 995, 1103, 1829 |
| NsiI | ATGCAT | 1 cut(s) | 544 |
| NspI | RCATGY | 1 cut(s) | 542 |
| NspV | TTCGAA | 1 cut(s) | 920 |
| OliI | CACNNNNGTG | 1 cut(s) | 705 |
| PaeI | GCATGC | 1 cut(s) | 542 |
| PaeR7I | CTCGAG | 2 cut(s) | 1631, 1668 |
| PagI | TCATGA | 1 cut(s) | 1582 |
| PceI | AGGCCT | 1 cut(s) | 464 |
| PciSI | GCTCTTC | 1 cut(s) | 1296 |
| PfeI | GAWTC | 6 cut(s) | 265, 568, 1043, 1614, 1627, 1748 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 361 |
| PfoI | TCCNGGA | 2 cut(s) | 726, 1617 |
| PkrI | GCNGC | 5 cut(s) | 790, 816, 980, 1282, 1693 |
| PleI | GAGTC | 6 cut(s) | 634, 1100, 1265, 1726, 1826, 2086 |
| PpsI | GAGTC | 6 cut(s) | 634, 1100, 1265, 1726, 1826, 2086 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1152 |
| PsiI | TTATAA | 1 cut(s) | 131 |
| Psp6I | CCWGG | 8 cut(s) | 426, 520, 726, 764, 1032, 1617, 1641, 2186 |
| PspEI | GGTNACC | 2 cut(s) | 995, 1937 |
| PspFI | CCCAGC | 2 cut(s) | 752, 1284 |
| PspGI | CCWGG | 8 cut(s) | 426, 520, 726, 764, 1032, 1617, 1641, 2186 |
| PspOMI | GGGCCC | 2 cut(s) | 1228, 1263 |
| PspXI | VCTCGAGB | 1 cut(s) | 1668 |
| PstI | CTGCAG | 1 cut(s) | 1334 |
| PsuI | RGATCY | 2 cut(s) | 187, 195 |
| RsaI | GTAC | 2 cut(s) | 240, 554 |
| RsaNI | GTAC | 2 cut(s) | 239, 553 |
| RseI | CAYNNNNRTG | 3 cut(s) | 705, 1743, 2046 |
| SapI | GCTCTTC | 1 cut(s) | 1296 |
| SaqAI | TTAA | 7 cut(s) | 329, 347, 603, 663, 669, 888, 2246 |
| SatI | GCNGC | 5 cut(s) | 789, 815, 979, 1281, 1692 |
| Sau3AI | GATC | 8 cut(s) | 187, 195, 367, 388, 632, 697, 1113, 1416 |
| SchI | GAGTC | 6 cut(s) | 634, 1100, 1265, 1726, 1826, 2087 |
| ScrFI | CCNGG | 8 cut(s) | 428, 522, 728, 766, 1034, 1619, 1643, 2188 |
| SduI | GDGCHC | 5 cut(s) | 73, 80, 1232, 1267, 1478 |
| SfaNI | GCATC | 8 cut(s) | 310, 679, 721, 1032, 1038, 1147, 1606, 2161 |
| SfcI | CTRYAG | 2 cut(s) | 878, 1330 |
| Sfr274I | CTCGAG | 2 cut(s) | 1631, 1668 |
| SfuI | TTCGAA | 1 cut(s) | 920 |
| SinI | GGWCC | 3 cut(s) | 724, 1091, 1910 |
| SlaI | CTCGAG | 2 cut(s) | 1631, 1668 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 705, 1743, 2046 |
| SmlI | CTYRAG | 3 cut(s) | 1601, 1631, 1668 |
| SmoI | CTYRAG | 3 cut(s) | 1601, 1631, 1668 |
| SphI | GCATGC | 1 cut(s) | 542 |
| Sse9I | AATT | 8 cut(s) | 14, 271, 330, 487, 973, 1503, 1529, 2227 |
| SseBI | AGGCCT | 1 cut(s) | 464 |
| SspMI | CTAG | 9 cut(s) | 468, 884, 1206, 1268, 1563, 1638, 2121, 2127, 2165 |
| StuI | AGGCCT | 1 cut(s) | 464 |
| StyD4I | CCNGG | 8 cut(s) | 426, 520, 726, 764, 1032, 1617, 1641, 2186 |
| StyI | CCWWGG | 5 cut(s) | 191, 1312, 2120, 2151, 2164 |
| TaaI | ACNGT | 5 cut(s) | 147, 228, 1008, 1376, 1657 |
| TaiI | ACGT | 3 cut(s) | 85, 1906, 1981 |
| TaqI | TCGA | 8 cut(s) | 370, 400, 629, 920, 1146, 1632, 1669, 1806 |
| TasI | AATT | 8 cut(s) | 14, 271, 330, 487, 973, 1503, 1529, 2227 |
| TatI | WGTACW | 1 cut(s) | 552 |
| TauI | GCSGC | 1 cut(s) | 817 |
| TfiI | GAWTC | 6 cut(s) | 265, 568, 1043, 1614, 1627, 1748 |
| Tru1I | TTAA | 7 cut(s) | 329, 347, 603, 663, 669, 888, 2246 |
| Tru9I | TTAA | 7 cut(s) | 329, 347, 603, 663, 669, 888, 2246 |
| TscAI | CASTG | 5 cut(s) | 1011, 1069, 1123, 1334, 1391 |
| TseFI | GTSAC | 4 cut(s) | 228, 995, 1103, 1829 |
| TseI | GCWGC | 4 cut(s) | 788, 978, 1280, 1691 |
| Tsp45I | GTSAC | 4 cut(s) | 228, 995, 1103, 1829 |
| TspDTI | ATGAA | 7 cut(s) | 7, 581, 599, 977, 1571, 1784, 1788 |
| TspGWI | ACGGA | 1 cut(s) | 1817 |
| TspRI | CASTG | 5 cut(s) | 1011, 1069, 1123, 1334, 1391 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 361 |
| VpaK11BI | GGWCC | 3 cut(s) | 724, 1091, 1910 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 651 |
| XapI | RAATTY | 3 cut(s) | 14, 1503, 2227 |
| XbaI | TCTAGA | 1 cut(s) | 1562 |
| XceI | RCATGY | 1 cut(s) | 542 |
| XhoI | CTCGAG | 2 cut(s) | 1631, 1668 |
| XmaJI | CCTAGG | 2 cut(s) | 2120, 2164 |
| XmiI | GTMKAC | 1 cut(s) | 142 |
| XspI | CTAG | 9 cut(s) | 468, 884, 1206, 1268, 1563, 1638, 2121, 2127, 2165 |
| Zsp2I | ATGCAT | 1 cut(s) | 544 |