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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 477, 863 |
| AccII | CGCG | 1 cut(s) | 462 |
| AciI | CCGC | 3 cut(s) | 154, 556, 612 |
| AclWI | GGATC | 3 cut(s) | 414, 751, 764 |
| AcsI | RAATTY | 1 cut(s) | 221 |
| AcyI | GRCGYC | 1 cut(s) | 478 |
| AfaI | GTAC | 3 cut(s) | 65, 653, 664 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 473, 827 |
| AgsI | TTSAA | 2 cut(s) | 169, 209 |
| AleI | CACNNNNGTG | 1 cut(s) | 245 |
| AluBI | AGCT | 4 cut(s) | 355, 365, 592, 640 |
| AluI | AGCT | 4 cut(s) | 355, 365, 592, 640 |
| Alw21I | GWGCWC | 1 cut(s) | 357 |
| Alw26I | GTCTC | 2 cut(s) | 289, 752 |
| AlwI | GGATC | 3 cut(s) | 414, 751, 764 |
| ApeKI | GCWGC | 1 cut(s) | 791 |
| ApoI | RAATTY | 1 cut(s) | 221 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 481, 513 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 198 |
| AspLEI | GCGC | 3 cut(s) | 464, 480, 839 |
| AspS9I | GGNCC | 1 cut(s) | 524 |
| AvaII | GGWCC | 1 cut(s) | 524 |
| BamHI | GGATCC | 1 cut(s) | 756 |
| BanI | GGYRCC | 2 cut(s) | 477, 863 |
| BanII | GRGCYC | 1 cut(s) | 357 |
| BbsI | GAAGAC | 2 cut(s) | 87, 269 |
| Bbv12I | GWGCWC | 1 cut(s) | 357 |
| BbvI | GCAGC | 1 cut(s) | 778 |
| BccI | CCATC | 3 cut(s) | 135, 289, 805 |
| BciVI | GTATCC | 1 cut(s) | 499 |
| BcoDI | GTCTC | 2 cut(s) | 289, 752 |
| BfaI | CTAG | 3 cut(s) | 131, 495, 641 |
| BfmI | CTRYAG | 1 cut(s) | 59 |
| BfoI | RGCGCY | 2 cut(s) | 481, 840 |
| BfuI | GTATCC | 1 cut(s) | 499 |
| BisI | GCNGC | 1 cut(s) | 792 |
| BlsI | GCNGC | 1 cut(s) | 793 |
| BmcAI | AGTACT | 1 cut(s) | 664 |
| Bme18I | GGWCC | 1 cut(s) | 524 |
| BmgT120I | GGNCC | 1 cut(s) | 524 |
| BmiI | GGNNCC | 4 cut(s) | 479, 578, 758, 865 |
| BpiI | GAAGAC | 2 cut(s) | 87, 269 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 871 |
| BpmI | CTGGAG | 1 cut(s) | 70 |
| BsaAI | YACGTR | 1 cut(s) | 693 |
| BsaHI | GRCGYC | 1 cut(s) | 478 |
| BsaJI | CCNNGG | 1 cut(s) | 423 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 473, 827 |
| BseDI | CCNNGG | 1 cut(s) | 423 |
| BseGI | GGATG | 7 cut(s) | 22, 27, 55, 393, 521, 816, 820 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 473, 827 |
| BseMII | CTCAG | 1 cut(s) | 204 |
| BseXI | GCAGC | 1 cut(s) | 778 |
| Bsh1236I | CGCG | 1 cut(s) | 462 |
| BshNI | GGYRCC | 2 cut(s) | 477, 863 |
| BsiHKAI | GWGCWC | 1 cut(s) | 357 |
| BslFI | GGGAC | 2 cut(s) | 721, 803 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 473, 827 |
| BsmAI | GTCTC | 2 cut(s) | 289, 752 |
| BsmBI | CGTCTC | 1 cut(s) | 289 |
| BsmFI | GGGAC | 2 cut(s) | 721, 803 |
| Bsp1286I | GDGCHC | 1 cut(s) | 357 |
| Bsp143I | GATC | 5 cut(s) | 237, 336, 419, 756, 776 |
| BspACI | CCGC | 3 cut(s) | 154, 556, 612 |
| BspCNI | CTCAG | 1 cut(s) | 203 |
| BspFNI | CGCG | 1 cut(s) | 462 |
| BspHI | TCATGA | 1 cut(s) | 349 |
| BspLI | GGNNCC | 4 cut(s) | 479, 578, 758, 865 |
| BspPI | GGATC | 3 cut(s) | 414, 751, 764 |
| BspT107I | GGYRCC | 2 cut(s) | 477, 863 |
| BssECI | CCNNGG | 1 cut(s) | 423 |
| BssMI | GATC | 5 cut(s) | 237, 336, 419, 756, 776 |
| BssNI | GRCGYC | 1 cut(s) | 478 |
| Bst4CI | ACNGT | 2 cut(s) | 63, 328 |
| BstACI | GRCGYC | 1 cut(s) | 478 |
| BstBAI | YACGTR | 1 cut(s) | 693 |
| BstC8I | GCNNGC | 1 cut(s) | 804 |
| BstDEI | CTNAG | 4 cut(s) | 190, 303, 500, 588 |
| BstDSI | CCRYGG | 1 cut(s) | 423 |
| BstEII | GGTNACC | 1 cut(s) | 551 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 825 |
| BstF5I | GGATG | 7 cut(s) | 22, 27, 55, 393, 521, 816, 820 |
| BstFNI | CGCG | 1 cut(s) | 462 |
| BstH2I | RGCGCY | 2 cut(s) | 481, 840 |
| BstHHI | GCGC | 3 cut(s) | 464, 480, 839 |
| BstKTI | GATC | 5 cut(s) | 240, 339, 422, 759, 779 |
| BstMAI | GTCTC | 2 cut(s) | 289, 752 |
| BstMBI | GATC | 5 cut(s) | 237, 336, 419, 756, 776 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 484 |
| BstNSI | RCATGY | 1 cut(s) | 802 |
| BstPI | GGTNACC | 1 cut(s) | 551 |
| BstSFI | CTRYAG | 1 cut(s) | 59 |
| BstUI | CGCG | 1 cut(s) | 462 |
| BstV1I | GCAGC | 1 cut(s) | 778 |
| BstV2I | GAAGAC | 2 cut(s) | 87, 269 |
| BstX2I | RGATCY | 2 cut(s) | 419, 756 |
| BstYI | RGATCY | 2 cut(s) | 419, 756 |
| BsuI | GTATCC | 1 cut(s) | 499 |
| BtgI | CCRYGG | 1 cut(s) | 423 |
| BtsCI | GGATG | 7 cut(s) | 22, 27, 55, 393, 521, 816, 820 |
| Cac8I | GCNNGC | 1 cut(s) | 804 |
| CciI | TCATGA | 1 cut(s) | 349 |
| CfoI | GCGC | 3 cut(s) | 464, 480, 839 |
| Cfr13I | GGNCC | 1 cut(s) | 524 |
| Csp6I | GTAC | 3 cut(s) | 64, 652, 663 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 862, 897 |
| CviAII | CATG | 4 cut(s) | 350, 386, 799, 860 |
| CviJI | RGCY | 5 cut(s) | 150, 355, 365, 592, 640 |
| CviKI_1 | RGCY | 5 cut(s) | 150, 355, 365, 592, 640 |
| CviQI | GTAC | 3 cut(s) | 64, 652, 663 |
| DdeI | CTNAG | 4 cut(s) | 190, 303, 500, 588 |
| DinI | GGCGCC | 1 cut(s) | 479 |
| DpnI | GATC | 5 cut(s) | 239, 338, 421, 758, 778 |
| DpnII | GATC | 5 cut(s) | 237, 336, 419, 756, 776 |
| Ecl136II | GAGCTC | 1 cut(s) | 355 |
| Eco24I | GRGCYC | 1 cut(s) | 357 |
| Eco47I | GGWCC | 1 cut(s) | 524 |
| Eco53kI | GAGCTC | 1 cut(s) | 355 |
| Eco91I | GGTNACC | 1 cut(s) | 551 |
| EcoICRI | GAGCTC | 1 cut(s) | 355 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 825 |
| EcoO65I | GGTNACC | 1 cut(s) | 551 |
| EcoRI | GAATTC | 1 cut(s) | 221 |
| EcoT22I | ATGCAT | 1 cut(s) | 673 |
| EcoT38I | GRGCYC | 1 cut(s) | 357 |
| EgeI | GGCGCC | 1 cut(s) | 479 |
| EheI | GGCGCC | 1 cut(s) | 479 |
| Esp3I | CGTCTC | 1 cut(s) | 289 |
| FaeI | CATG | 4 cut(s) | 353, 389, 802, 863 |
| FaqI | GGGAC | 2 cut(s) | 721, 803 |
| FatI | CATG | 4 cut(s) | 349, 385, 798, 859 |
| FauNDI | CATATG | 2 cut(s) | 12, 45 |
| Fnu4HI | GCNGC | 1 cut(s) | 792 |
| FokI | GGATG | 7 cut(s) | 14, 29, 62, 380, 528, 823, 827 |
| FriOI | GRGCYC | 1 cut(s) | 357 |
| Fsp4HI | GCNGC | 1 cut(s) | 792 |
| FspBI | CTAG | 3 cut(s) | 131, 495, 641 |
| GlaI | GCGC | 3 cut(s) | 463, 479, 838 |
| GluI | GCNGC | 1 cut(s) | 792 |
| GsuI | CTGGAG | 1 cut(s) | 70 |
| HaeII | RGCGCY | 2 cut(s) | 481, 840 |
| HhaI | GCGC | 3 cut(s) | 464, 480, 839 |
| Hin1I | GRCGYC | 1 cut(s) | 478 |
| Hin1II | CATG | 4 cut(s) | 353, 389, 802, 863 |
| Hin6I | GCGC | 3 cut(s) | 462, 478, 837 |
| HinP1I | GCGC | 3 cut(s) | 462, 478, 837 |
| Hpy188I | TCNGA | 1 cut(s) | 193 |
| Hpy188III | TCNNGA | 7 cut(s) | 87, 125, 179, 350, 417, 443, 754 |
| Hpy99I | CGWCG | 1 cut(s) | 708 |
| HpyAV | CCTTC | 3 cut(s) | 84, 286, 542 |
| HpyCH4III | ACNGT | 2 cut(s) | 63, 328 |
| HpyCH4IV | ACGT | 4 cut(s) | 105, 692, 703, 832 |
| HpyCH4V | TGCA | 3 cut(s) | 671, 794, 806 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 484 |
| HpyF3I | CTNAG | 4 cut(s) | 190, 303, 500, 588 |
| HpySE526I | ACGT | 4 cut(s) | 105, 692, 703, 832 |
| Hsp92I | GRCGYC | 1 cut(s) | 478 |
| Hsp92II | CATG | 4 cut(s) | 353, 389, 802, 863 |
| HspAI | GCGC | 3 cut(s) | 462, 478, 837 |
| KasI | GGCGCC | 1 cut(s) | 477 |
| Kzo9I | GATC | 5 cut(s) | 237, 336, 419, 756, 776 |
| LmnI | GCTCC | 1 cut(s) | 362 |
| LpnPI | CCDG | 7 cut(s) | 100, 138, 428, 507, 739, 816, 875 |
| Lsp1109I | GCAGC | 1 cut(s) | 778 |
| MaeI | CTAG | 3 cut(s) | 131, 495, 641 |
| MaeII | ACGT | 4 cut(s) | 105, 692, 703, 832 |
| MaeIII | GTNAC | 4 cut(s) | 110, 551, 633, 769 |
| MalI | GATC | 5 cut(s) | 239, 338, 421, 758, 778 |
| MboI | GATC | 5 cut(s) | 237, 336, 419, 756, 776 |
| MboII | GAAGA | 4 cut(s) | 92, 274, 415, 594 |
| MflI | RGATCY | 2 cut(s) | 419, 756 |
| MhlI | GDGCHC | 1 cut(s) | 357 |
| MluCI | AATT | 6 cut(s) | 221, 412, 451, 594, 698, 721 |
| Mly113I | GGCGCC | 1 cut(s) | 478 |
| MlyI | GAGTC | 4 cut(s) | 31, 77, 107, 259 |
| MnlI | CCTC | 5 cut(s) | 161, 467, 637, 821, 845 |
| Mph1103I | ATGCAT | 1 cut(s) | 673 |
| MroXI | GAANNNNTTC | 1 cut(s) | 198 |
| MseI | TTAA | 2 cut(s) | 215, 765 |
| MslI | CAYNNNNRTG | 8 cut(s) | 15, 32, 48, 245, 398, 514, 691, 786 |
| MvnI | CGCG | 1 cut(s) | 462 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 484 |
| NarI | GGCGCC | 1 cut(s) | 478 |
| NdeI | CATATG | 2 cut(s) | 12, 45 |
| NdeII | GATC | 5 cut(s) | 237, 336, 419, 756, 776 |
| NlaIII | CATG | 4 cut(s) | 353, 389, 802, 863 |
| NlaIV | GGNNCC | 4 cut(s) | 479, 578, 758, 865 |
| NmuCI | GTSAC | 2 cut(s) | 110, 769 |
| NsiI | ATGCAT | 1 cut(s) | 673 |
| NspI | RCATGY | 1 cut(s) | 802 |
| OliI | CACNNNNGTG | 1 cut(s) | 245 |
| PagI | TCATGA | 1 cut(s) | 349 |
| PdmI | GAANNNNTTC | 1 cut(s) | 198 |
| PfeI | GAWTC | 5 cut(s) | 20, 53, 209, 315, 446 |
| PkrI | GCNGC | 1 cut(s) | 793 |
| PleI | GAGTC | 4 cut(s) | 31, 77, 107, 259 |
| PluTI | GGCGCC | 1 cut(s) | 481 |
| PpsI | GAGTC | 4 cut(s) | 31, 77, 107, 259 |
| Ppu21I | YACGTR | 1 cut(s) | 693 |
| Psp124BI | GAGCTC | 1 cut(s) | 357 |
| PspEI | GGTNACC | 1 cut(s) | 551 |
| PspN4I | GGNNCC | 4 cut(s) | 479, 578, 758, 865 |
| PspPI | GGNCC | 1 cut(s) | 524 |
| PsuI | RGATCY | 2 cut(s) | 419, 756 |
| RsaI | GTAC | 3 cut(s) | 65, 653, 664 |
| RsaNI | GTAC | 3 cut(s) | 64, 652, 663 |
| RseI | CAYNNNNRTG | 8 cut(s) | 15, 32, 48, 245, 398, 514, 691, 786 |
| SacI | GAGCTC | 1 cut(s) | 357 |
| SaqAI | TTAA | 2 cut(s) | 215, 765 |
| SatI | GCNGC | 1 cut(s) | 792 |
| Sau3AI | GATC | 5 cut(s) | 237, 336, 419, 756, 776 |
| Sau96I | GGNCC | 1 cut(s) | 524 |
| ScaI | AGTACT | 1 cut(s) | 664 |
| SchI | GAGTC | 4 cut(s) | 31, 77, 107, 259 |
| SduI | GDGCHC | 1 cut(s) | 357 |
| SfcI | CTRYAG | 1 cut(s) | 59 |
| SfoI | GGCGCC | 1 cut(s) | 479 |
| SinI | GGWCC | 1 cut(s) | 524 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 15, 32, 48, 245, 398, 514, 691, 786 |
| Sse9I | AATT | 6 cut(s) | 221, 412, 451, 594, 698, 721 |
| SsiI | CCGC | 3 cut(s) | 154, 556, 612 |
| SspDI | GGCGCC | 1 cut(s) | 477 |
| SspMI | CTAG | 3 cut(s) | 131, 495, 641 |
| SstI | GAGCTC | 1 cut(s) | 357 |
| TaaI | ACNGT | 2 cut(s) | 63, 328 |
| TaiI | ACGT | 4 cut(s) | 108, 695, 706, 835 |
| TaqI | TCGA | 2 cut(s) | 313, 416 |
| TaqII | GACCGA | 1 cut(s) | 349 |
| TasI | AATT | 6 cut(s) | 221, 412, 451, 594, 698, 721 |
| TatI | WGTACW | 2 cut(s) | 63, 662 |
| TfiI | GAWTC | 5 cut(s) | 20, 53, 209, 315, 446 |
| Tru1I | TTAA | 2 cut(s) | 215, 765 |
| Tru9I | TTAA | 2 cut(s) | 215, 765 |
| TseFI | GTSAC | 2 cut(s) | 110, 769 |
| TseI | GCWGC | 1 cut(s) | 791 |
| Tsp45I | GTSAC | 2 cut(s) | 110, 769 |
| TspDTI | ATGAA | 5 cut(s) | 89, 93, 338, 383, 587 |
| TspGWI | ACGGA | 3 cut(s) | 98, 412, 589 |
| VpaK11BI | GGWCC | 1 cut(s) | 524 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 825 |
| XapI | RAATTY | 1 cut(s) | 221 |
| XceI | RCATGY | 1 cut(s) | 802 |
| XmnI | GAANNNNTTC | 1 cut(s) | 198 |
| XspI | CTAG | 3 cut(s) | 131, 495, 641 |
| ZrmI | AGTACT | 1 cut(s) | 664 |
| Zsp2I | ATGCAT | 1 cut(s) | 673 |