No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 52 - 154 | 6.7e-06 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 585, 630 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 693 |
| AccB1I | GGYRCC | 2 cut(s) | 121, 848 |
| AccBSI | CCGCTC | 1 cut(s) | 658 |
| AciI | CCGC | 2 cut(s) | 658, 727 |
| AcuI | CTGAAG | 1 cut(s) | 513 |
| AcvI | CACGTG | 2 cut(s) | 749, 767 |
| AdeI | CACNNNGTG | 1 cut(s) | 752 |
| AfaI | GTAC | 1 cut(s) | 490 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 644, 645, 768, 797 |
| AflIII | ACRYGT | 2 cut(s) | 746, 764 |
| AgsI | TTSAA | 5 cut(s) | 96, 307, 314, 343, 591 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 343, 410 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AluBI | AGCT | 6 cut(s) | 247, 259, 427, 529, 551, 815 |
| AluI | AGCT | 6 cut(s) | 247, 259, 427, 529, 551, 815 |
| AoxI | GGCC | 1 cut(s) | 593 |
| AspA2I | CCTAGG | 3 cut(s) | 14, 665, 860 |
| AspLEI | GCGC | 3 cut(s) | 330, 651, 830 |
| AspS9I | GGNCC | 2 cut(s) | 594, 695 |
| AvaII | GGWCC | 1 cut(s) | 695 |
| AvrII | CCTAGG | 3 cut(s) | 14, 665, 860 |
| BanI | GGYRCC | 2 cut(s) | 121, 848 |
| BauI | CACGAG | 2 cut(s) | 572, 816 |
| BbrPI | CACGTG | 2 cut(s) | 749, 767 |
| BbsI | GAAGAC | 1 cut(s) | 443 |
| BccI | CCATC | 3 cut(s) | 93, 497, 714 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BfaI | CTAG | 4 cut(s) | 15, 260, 666, 861 |
| BfmI | CTRYAG | 1 cut(s) | 546 |
| BfoI | RGCGCY | 1 cut(s) | 831 |
| BglII | AGATCT | 1 cut(s) | 133 |
| BlnI | CCTAGG | 3 cut(s) | 14, 665, 860 |
| Bme1390I | CCNGG | 1 cut(s) | 119 |
| Bme18I | GGWCC | 1 cut(s) | 695 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 343, 410 |
| BmgT120I | GGNCC | 2 cut(s) | 594, 695 |
| BmiI | GGNNCC | 6 cut(s) | 123, 662, 696, 808, 850, 867 |
| BmrFI | CCNGG | 1 cut(s) | 119 |
| BmsI | GCATC | 3 cut(s) | 174, 179, 226 |
| BpiI | GAAGAC | 1 cut(s) | 443 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| Bsa29I | ATCGAT | 1 cut(s) | 72 |
| BsaAI | YACGTR | 2 cut(s) | 749, 767 |
| BsaJI | CCNNGG | 4 cut(s) | 14, 665, 796, 860 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 209, 239, 763, 793, 841, 871 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 644, 645, 768, 797 |
| Bse3DI | GCAATG | 1 cut(s) | 283 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseCI | ATCGAT | 1 cut(s) | 72 |
| BseDI | CCNNGG | 4 cut(s) | 14, 665, 796, 860 |
| BseGI | GGATG | 2 cut(s) | 241, 706 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 644, 645, 768, 797 |
| BseMI | GCAATG | 1 cut(s) | 283 |
| BseMII | CTCAG | 3 cut(s) | 54, 223, 543 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BshFI | GGCC | 1 cut(s) | 595 |
| BshNI | GGYRCC | 2 cut(s) | 121, 848 |
| BshVI | ATCGAT | 1 cut(s) | 72 |
| BslFI | GGGAC | 2 cut(s) | 690, 699 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 644, 645, 768, 797 |
| BsmFI | GGGAC | 2 cut(s) | 690, 699 |
| BsnI | GGCC | 1 cut(s) | 595 |
| Bsp143I | GATC | 2 cut(s) | 133, 228 |
| BspACI | CCGC | 2 cut(s) | 658, 727 |
| BspANI | GGCC | 1 cut(s) | 595 |
| BspCNI | CTCAG | 3 cut(s) | 53, 222, 544 |
| BspDI | ATCGAT | 1 cut(s) | 72 |
| BspHI | TCATGA | 1 cut(s) | 616 |
| BspLI | GGNNCC | 6 cut(s) | 123, 662, 696, 808, 850, 867 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT107I | GGYRCC | 2 cut(s) | 121, 848 |
| BsrBI | CCGCTC | 1 cut(s) | 658 |
| BsrDI | GCAATG | 1 cut(s) | 283 |
| BssECI | CCNNGG | 4 cut(s) | 14, 665, 796, 860 |
| BssMI | GATC | 2 cut(s) | 133, 228 |
| BssSI | CACGAG | 2 cut(s) | 572, 816 |
| BssT1I | CCWWGG | 3 cut(s) | 14, 665, 860 |
| Bst2BI | CACGAG | 2 cut(s) | 572, 816 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 488 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstBAI | YACGTR | 2 cut(s) | 749, 767 |
| BstC8I | GCNNGC | 1 cut(s) | 46 |
| BstDEI | CTNAG | 4 cut(s) | 40, 209, 552, 606 |
| BstDSI | CCRYGG | 1 cut(s) | 796 |
| BstF5I | GGATG | 2 cut(s) | 241, 706 |
| BstH2I | RGCGCY | 1 cut(s) | 831 |
| BstHHI | GCGC | 3 cut(s) | 330, 651, 830 |
| BstKTI | GATC | 2 cut(s) | 136, 231 |
| BstMBI | GATC | 2 cut(s) | 133, 228 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 265, 655 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstSCI | CCNGG | 1 cut(s) | 117 |
| BstSFI | CTRYAG | 1 cut(s) | 546 |
| BstV2I | GAAGAC | 1 cut(s) | 443 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| Bsu15I | ATCGAT | 1 cut(s) | 72 |
| BsuRI | GGCC | 1 cut(s) | 595 |
| BsuTUI | ATCGAT | 1 cut(s) | 72 |
| BtgI | CCRYGG | 1 cut(s) | 796 |
| BtgZI | GCGATG | 1 cut(s) | 202 |
| BtsCI | GGATG | 2 cut(s) | 241, 706 |
| Cac8I | GCNNGC | 1 cut(s) | 46 |
| CciI | TCATGA | 1 cut(s) | 616 |
| CfoI | GCGC | 3 cut(s) | 330, 651, 830 |
| Cfr13I | GGNCC | 2 cut(s) | 594, 695 |
| ClaI | ATCGAT | 1 cut(s) | 72 |
| CseI | GACGC | 1 cut(s) | 377 |
| Csp6I | GTAC | 1 cut(s) | 489 |
| CviAII | CATG | 6 cut(s) | 31, 164, 560, 617, 680, 782 |
| CviQI | GTAC | 1 cut(s) | 489 |
| DdeI | CTNAG | 4 cut(s) | 40, 209, 552, 606 |
| DpnI | GATC | 2 cut(s) | 135, 230 |
| DpnII | GATC | 2 cut(s) | 133, 228 |
| DraIII | CACNNNGTG | 1 cut(s) | 752 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 693 |
| DriI | GACNNNNNGTC | 2 cut(s) | 343, 410 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 693 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 343, 410 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco130I | CCWWGG | 3 cut(s) | 14, 665, 860 |
| Eco47I | GGWCC | 1 cut(s) | 695 |
| Eco57I | CTGAAG | 1 cut(s) | 513 |
| Eco72I | CACGTG | 2 cut(s) | 749, 767 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| EcoT14I | CCWWGG | 3 cut(s) | 14, 665, 860 |
| ErhI | CCWWGG | 3 cut(s) | 14, 665, 860 |
| FaeI | CATG | 6 cut(s) | 34, 167, 563, 620, 683, 785 |
| FaqI | GGGAC | 2 cut(s) | 690, 699 |
| FatI | CATG | 6 cut(s) | 30, 163, 559, 616, 679, 781 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| FokI | GGATG | 2 cut(s) | 248, 693 |
| FspBI | CTAG | 4 cut(s) | 15, 260, 666, 861 |
| GlaI | GCGC | 3 cut(s) | 329, 650, 829 |
| HaeII | RGCGCY | 1 cut(s) | 831 |
| HaeIII | GGCC | 1 cut(s) | 595 |
| HgaI | GACGC | 1 cut(s) | 377 |
| HhaI | GCGC | 3 cut(s) | 330, 651, 830 |
| Hin1II | CATG | 6 cut(s) | 34, 167, 563, 620, 683, 785 |
| Hin6I | GCGC | 3 cut(s) | 328, 649, 828 |
| HinP1I | GCGC | 3 cut(s) | 328, 649, 828 |
| HinfI | GANTC | 6 cut(s) | 38, 287, 396, 439, 510, 835 |
| Hpy166II | GTNNAC | 1 cut(s) | 404 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 149, 212 |
| Hpy188III | TCNNGA | 4 cut(s) | 181, 574, 617, 716 |
| Hpy8I | GTNNAC | 1 cut(s) | 404 |
| HpyAV | CCTTC | 3 cut(s) | 301, 460, 713 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 488 |
| HpyCH4IV | ACGT | 3 cut(s) | 688, 748, 766 |
| HpyCH4V | TGCA | 2 cut(s) | 239, 635 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 265, 655 |
| HpyF3I | CTNAG | 4 cut(s) | 40, 209, 552, 606 |
| HpySE526I | ACGT | 3 cut(s) | 688, 748, 766 |
| Hsp92II | CATG | 6 cut(s) | 34, 167, 563, 620, 683, 785 |
| HspAI | GCGC | 3 cut(s) | 328, 649, 828 |
| Kzo9I | GATC | 2 cut(s) | 133, 228 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| LmnI | GCTCC | 2 cut(s) | 655, 806 |
| LpnPI | CCDG | 7 cut(s) | 30, 104, 131, 144, 312, 423, 701 |
| LweI | GCATC | 3 cut(s) | 174, 179, 226 |
| MaeI | CTAG | 4 cut(s) | 15, 260, 666, 861 |
| MaeII | ACGT | 3 cut(s) | 688, 748, 766 |
| MaeIII | GTNAC | 1 cut(s) | 412 |
| MalI | GATC | 2 cut(s) | 135, 230 |
| MbiI | CCGCTC | 1 cut(s) | 658 |
| MboI | GATC | 2 cut(s) | 133, 228 |
| MboII | GAAGA | 4 cut(s) | 275, 365, 448, 752 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MluCI | AATT | 5 cut(s) | 361, 429, 580, 586, 625 |
| MlyI | GAGTC | 3 cut(s) | 32, 433, 844 |
| MnlI | CCTC | 9 cut(s) | 302, 305, 570, 613, 638, 676, 767, 839, 867 |
| MslI | CAYNNNNRTG | 1 cut(s) | 572 |
| MspR9I | CCNGG | 1 cut(s) | 119 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 265, 655 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 2 cut(s) | 133, 228 |
| NlaIII | CATG | 6 cut(s) | 34, 167, 563, 620, 683, 785 |
| NlaIV | GGNNCC | 6 cut(s) | 123, 662, 696, 808, 850, 867 |
| NmuCI | GTSAC | 1 cut(s) | 412 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 616 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PfeI | GAWTC | 3 cut(s) | 287, 396, 510 |
| PleI | GAGTC | 3 cut(s) | 32, 433, 843 |
| PmaCI | CACGTG | 2 cut(s) | 749, 767 |
| PmlI | CACGTG | 2 cut(s) | 749, 767 |
| PpsI | GAGTC | 3 cut(s) | 32, 433, 843 |
| Ppu21I | YACGTR | 2 cut(s) | 749, 767 |
| PsiI | TTATAA | 2 cut(s) | 585, 630 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspCI | CACGTG | 2 cut(s) | 749, 767 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 6 cut(s) | 123, 662, 696, 808, 850, 867 |
| PspPI | GGNCC | 2 cut(s) | 594, 695 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 490 |
| RsaNI | GTAC | 1 cut(s) | 489 |
| RseI | CAYNNNNRTG | 1 cut(s) | 572 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| Sau3AI | GATC | 2 cut(s) | 133, 228 |
| Sau96I | GGNCC | 2 cut(s) | 594, 695 |
| SchI | GAGTC | 3 cut(s) | 32, 433, 844 |
| ScrFI | CCNGG | 1 cut(s) | 119 |
| SfaNI | GCATC | 3 cut(s) | 174, 179, 226 |
| SfcI | CTRYAG | 1 cut(s) | 546 |
| SinI | GGWCC | 1 cut(s) | 695 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 572 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| Sse9I | AATT | 5 cut(s) | 361, 429, 580, 586, 625 |
| SsiI | CCGC | 2 cut(s) | 658, 727 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 4 cut(s) | 15, 260, 666, 861 |
| StyD4I | CCNGG | 1 cut(s) | 117 |
| StyI | CCWWGG | 3 cut(s) | 14, 665, 860 |
| TaaI | ACNGT | 2 cut(s) | 62, 488 |
| TaiI | ACGT | 3 cut(s) | 691, 751, 769 |
| TaqI | TCGA | 4 cut(s) | 5, 21, 72, 227 |
| TasI | AATT | 5 cut(s) | 361, 429, 580, 586, 625 |
| TfiI | GAWTC | 3 cut(s) | 287, 396, 510 |
| TseFI | GTSAC | 1 cut(s) | 412 |
| Tsp45I | GTSAC | 1 cut(s) | 412 |
| TspDTI | ATGAA | 3 cut(s) | 24, 512, 605 |
| TspGWI | ACGGA | 1 cut(s) | 785 |
| VpaK11BI | GGWCC | 1 cut(s) | 695 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmaJI | CCTAGG | 3 cut(s) | 14, 665, 860 |
| XspI | CTAG | 4 cut(s) | 15, 260, 666, 861 |