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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 729 |
| AccB1I | GGYRCC | 2 cut(s) | 684, 842 |
| AccII | CGCG | 1 cut(s) | 669 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AciI | CCGC | 2 cut(s) | 763, 984 |
| AclWI | GGATC | 1 cut(s) | 551 |
| AcoI | YGGCCR | 1 cut(s) | 947 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcyI | GRCGYC | 2 cut(s) | 685, 843 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 680 |
| AgsI | TTSAA | 4 cut(s) | 187, 376, 569, 880 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 4 cut(s) | 155, 562, 572, 965 |
| AluI | AGCT | 4 cut(s) | 155, 562, 572, 965 |
| Alw21I | GWGCWC | 2 cut(s) | 909, 967 |
| Alw26I | GTCTC | 2 cut(s) | 292, 619 |
| AlwI | GGATC | 1 cut(s) | 551 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| AoxI | GGCC | 2 cut(s) | 93, 947 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 3 cut(s) | 671, 687, 845 |
| AspS9I | GGNCC | 1 cut(s) | 731 |
| AsuHPI | GGTGA | 2 cut(s) | 211, 973 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| AxyI | CCTNAGG | 1 cut(s) | 675 |
| BalI | TGGCCA | 1 cut(s) | 949 |
| BanI | GGYRCC | 2 cut(s) | 684, 842 |
| BanII | GRGCYC | 1 cut(s) | 967 |
| BauI | CACGAG | 1 cut(s) | 966 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| Bbv12I | GWGCWC | 2 cut(s) | 909, 967 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 4 cut(s) | 92, 215, 342, 496 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 341, 375 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 2 cut(s) | 292, 619 |
| BfaI | CTAG | 5 cut(s) | 126, 273, 293, 338, 708 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BfoI | RGCGCY | 2 cut(s) | 688, 846 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 731 |
| BmiI | GGNNCC | 3 cut(s) | 686, 785, 844 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 94, 442 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaHI | GRCGYC | 2 cut(s) | 685, 843 |
| BsaI | GGTCTC | 2 cut(s) | 292, 619 |
| BsaJI | CCNNGG | 1 cut(s) | 630 |
| BsaWI | WCCGGW | 1 cut(s) | 649 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 680 |
| Bse1I | ACTGG | 1 cut(s) | 24 |
| Bse21I | CCTNAGG | 1 cut(s) | 675 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 1 cut(s) | 630 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 600 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BseMII | CTCAG | 2 cut(s) | 44, 894 |
| BseNI | ACTGG | 1 cut(s) | 24 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 669 |
| BshFI | GGCC | 2 cut(s) | 95, 949 |
| BshNI | GGYRCC | 2 cut(s) | 684, 842 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 2 cut(s) | 909, 967 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 650 |
| BslFI | GGGAC | 1 cut(s) | 725 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BsmAI | GTCTC | 2 cut(s) | 292, 619 |
| BsmFI | GGGAC | 1 cut(s) | 725 |
| BsnI | GGCC | 2 cut(s) | 95, 949 |
| Bso31I | GGTCTC | 2 cut(s) | 292, 619 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 909, 967 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp143I | GATC | 2 cut(s) | 543, 793 |
| BspACI | CCGC | 2 cut(s) | 763, 984 |
| BspANI | GGCC | 2 cut(s) | 95, 949 |
| BspCNI | CTCAG | 2 cut(s) | 43, 895 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspFNI | CGCG | 1 cut(s) | 669 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 3 cut(s) | 686, 785, 844 |
| BspPI | GGATC | 1 cut(s) | 551 |
| BspT107I | GGYRCC | 2 cut(s) | 684, 842 |
| BspTNI | GGTCTC | 2 cut(s) | 292, 619 |
| BsrI | ACTGG | 1 cut(s) | 24 |
| BssECI | CCNNGG | 1 cut(s) | 630 |
| BssMI | GATC | 2 cut(s) | 543, 793 |
| BssNI | GRCGYC | 2 cut(s) | 685, 843 |
| BssSI | CACGAG | 1 cut(s) | 966 |
| Bst2BI | CACGAG | 1 cut(s) | 966 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 2 cut(s) | 535, 941 |
| Bst6I | CTCTTC | 1 cut(s) | 784 |
| BstACI | GRCGYC | 2 cut(s) | 685, 843 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 4 cut(s) | 30, 675, 855, 903 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstEII | GGTNACC | 1 cut(s) | 758 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 678 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 600 |
| BstFNI | CGCG | 1 cut(s) | 669 |
| BstH2I | RGCGCY | 2 cut(s) | 688, 846 |
| BstHHI | GCGC | 3 cut(s) | 671, 687, 845 |
| BstKTI | GATC | 2 cut(s) | 546, 796 |
| BstMAI | GTCTC | 2 cut(s) | 292, 619 |
| BstMBI | GATC | 2 cut(s) | 543, 793 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 188, 691 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstPI | GGTNACC | 1 cut(s) | 758 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstUI | CGCG | 1 cut(s) | 669 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 839 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| Bsu36I | CCTNAGG | 1 cut(s) | 675 |
| BsuRI | GGCC | 2 cut(s) | 95, 949 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 600 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 3 cut(s) | 671, 687, 845 |
| Cfr13I | GGNCC | 1 cut(s) | 731 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| CviAII | CATG | 3 cut(s) | 557, 593, 833 |
| DdeI | CTNAG | 4 cut(s) | 30, 675, 855, 903 |
| DinI | GGCGCC | 2 cut(s) | 686, 844 |
| DpnI | GATC | 2 cut(s) | 545, 795 |
| DpnII | GATC | 2 cut(s) | 543, 793 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 729 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 729 |
| EaeI | YGGCCR | 1 cut(s) | 947 |
| Eam1104I | CTCTTC | 1 cut(s) | 784 |
| EarI | CTCTTC | 1 cut(s) | 784 |
| Ecl136II | GAGCTC | 1 cut(s) | 965 |
| Eco24I | GRGCYC | 1 cut(s) | 967 |
| Eco31I | GGTCTC | 2 cut(s) | 292, 619 |
| Eco32I | GATATC | 2 cut(s) | 56, 445 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco53kI | GAGCTC | 1 cut(s) | 965 |
| Eco81I | CCTNAGG | 1 cut(s) | 675 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 758 |
| EcoICRI | GAGCTC | 1 cut(s) | 965 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 678 |
| EcoO65I | GGTNACC | 1 cut(s) | 758 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 2 cut(s) | 56, 445 |
| EcoT38I | GRGCYC | 1 cut(s) | 967 |
| EgeI | GGCGCC | 2 cut(s) | 686, 844 |
| EheI | GGCGCC | 2 cut(s) | 686, 844 |
| FaeI | CATG | 3 cut(s) | 560, 596, 836 |
| FaqI | GGGAC | 1 cut(s) | 725 |
| FatI | CATG | 3 cut(s) | 556, 592, 832 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 3 cut(s) | 197, 245, 587 |
| FriOI | GRGCYC | 1 cut(s) | 967 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 5 cut(s) | 126, 273, 293, 338, 708 |
| GlaI | GCGC | 3 cut(s) | 670, 686, 844 |
| GluI | GCNGC | 1 cut(s) | 180 |
| HaeII | RGCGCY | 2 cut(s) | 688, 846 |
| HaeIII | GGCC | 2 cut(s) | 95, 949 |
| HapII | CCGG | 1 cut(s) | 650 |
| HhaI | GCGC | 3 cut(s) | 671, 687, 845 |
| Hin1I | GRCGYC | 2 cut(s) | 685, 843 |
| Hin1II | CATG | 3 cut(s) | 560, 596, 836 |
| Hin6I | GCGC | 3 cut(s) | 669, 685, 843 |
| HinP1I | GCGC | 3 cut(s) | 669, 685, 843 |
| HpaII | CCGG | 1 cut(s) | 650 |
| HphI | GGTGA | 2 cut(s) | 211, 973 |
| Hpy188I | TCNGA | 3 cut(s) | 400, 829, 904 |
| Hpy188III | TCNNGA | 8 cut(s) | 51, 71, 119, 557, 624, 650, 924, 968 |
| HpyAV | CCTTC | 7 cut(s) | 181, 270, 293, 368, 493, 499, 749 |
| HpyCH4III | ACNGT | 2 cut(s) | 535, 941 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 312, 799, 873 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 509 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 188, 691 |
| HpyF3I | CTNAG | 4 cut(s) | 30, 675, 855, 903 |
| HpySE526I | ACGT | 4 cut(s) | 135, 312, 799, 873 |
| Hsp92I | GRCGYC | 2 cut(s) | 685, 843 |
| Hsp92II | CATG | 3 cut(s) | 560, 596, 836 |
| HspAI | GCGC | 3 cut(s) | 669, 685, 843 |
| KasI | GGCGCC | 2 cut(s) | 684, 842 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| Kzo9I | GATC | 2 cut(s) | 543, 793 |
| LmnI | GCTCC | 2 cut(s) | 676, 932 |
| LpnPI | CCDG | 7 cut(s) | 5, 36, 95, 116, 143, 663, 714 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 2 cut(s) | 94, 442 |
| MaeI | CTAG | 5 cut(s) | 126, 273, 293, 338, 708 |
| MaeII | ACGT | 4 cut(s) | 135, 312, 799, 873 |
| MaeIII | GTNAC | 5 cut(s) | 5, 317, 529, 758, 979 |
| MalI | GATC | 2 cut(s) | 545, 795 |
| MboI | GATC | 2 cut(s) | 543, 793 |
| MboII | GAAGA | 7 cut(s) | 179, 275, 278, 308, 622, 801, 983 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MhlI | GDGCHC | 2 cut(s) | 909, 967 |
| MlsI | TGGCCA | 1 cut(s) | 949 |
| MluCI | AATT | 6 cut(s) | 42, 428, 619, 658, 715, 975 |
| MluNI | TGGCCA | 1 cut(s) | 949 |
| Mly113I | GGCGCC | 2 cut(s) | 685, 843 |
| MlyI | GAGTC | 6 cut(s) | 214, 314, 466, 662, 880, 908 |
| MnlI | CCTC | 6 cut(s) | 462, 674, 745, 805, 809, 835 |
| Mox20I | TGGCCA | 1 cut(s) | 949 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 949 |
| MseI | TTAA | 2 cut(s) | 414, 422 |
| MslI | CAYNNNNRTG | 7 cut(s) | 215, 231, 605, 747, 837, 867, 912 |
| Msp20I | TGGCCA | 1 cut(s) | 949 |
| MspI | CCGG | 1 cut(s) | 650 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MunI | CAATTG | 1 cut(s) | 42 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MvnI | CGCG | 1 cut(s) | 669 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 188, 691 |
| NarI | GGCGCC | 2 cut(s) | 685, 843 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 543, 793 |
| NlaIII | CATG | 3 cut(s) | 560, 596, 836 |
| NlaIV | GGNNCC | 3 cut(s) | 686, 785, 844 |
| NmuCI | GTSAC | 2 cut(s) | 317, 979 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 5 cut(s) | 67, 102, 115, 236, 522 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 6 cut(s) | 214, 314, 466, 661, 880, 907 |
| PluTI | GGCGCC | 2 cut(s) | 688, 846 |
| PpsI | GAGTC | 6 cut(s) | 214, 314, 466, 661, 880, 907 |
| Psp124BI | GAGCTC | 1 cut(s) | 967 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 758 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 3 cut(s) | 686, 785, 844 |
| PspPI | GGNCC | 1 cut(s) | 731 |
| RseI | CAYNNNNRTG | 7 cut(s) | 215, 231, 605, 747, 837, 867, 912 |
| SacI | GAGCTC | 1 cut(s) | 967 |
| SaqAI | TTAA | 2 cut(s) | 414, 422 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 2 cut(s) | 543, 793 |
| Sau96I | GGNCC | 1 cut(s) | 731 |
| SchI | GAGTC | 6 cut(s) | 214, 314, 466, 662, 880, 908 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 2 cut(s) | 909, 967 |
| SfaNI | GCATC | 2 cut(s) | 94, 442 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| SfoI | GGCGCC | 2 cut(s) | 686, 844 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 215, 231, 605, 747, 837, 867, 912 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 6 cut(s) | 42, 428, 619, 658, 715, 975 |
| SsiI | CCGC | 2 cut(s) | 763, 984 |
| SspDI | GGCGCC | 2 cut(s) | 684, 842 |
| SspMI | CTAG | 5 cut(s) | 126, 273, 293, 338, 708 |
| SstI | GAGCTC | 1 cut(s) | 967 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 2 cut(s) | 535, 941 |
| TaiI | ACGT | 4 cut(s) | 138, 315, 802, 876 |
| TaqI | TCGA | 5 cut(s) | 120, 520, 525, 623, 925 |
| TasI | AATT | 6 cut(s) | 42, 428, 619, 658, 715, 975 |
| TfiI | GAWTC | 5 cut(s) | 67, 102, 115, 236, 522 |
| Tru1I | TTAA | 2 cut(s) | 414, 422 |
| Tru9I | TTAA | 2 cut(s) | 414, 422 |
| TseFI | GTSAC | 2 cut(s) | 317, 979 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 2 cut(s) | 317, 979 |
| TspDTI | ATGAA | 3 cut(s) | 272, 545, 590 |
| TspGWI | ACGGA | 2 cut(s) | 556, 796 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 678 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 5 cut(s) | 126, 273, 293, 338, 708 |