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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 40, 45 |
| AclWI | GGATC | 2 cut(s) | 629, 699 |
| AcsI | RAATTY | 3 cut(s) | 11, 95, 506 |
| AfaI | GTAC | 1 cut(s) | 326 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 307 |
| AgsI | TTSAA | 1 cut(s) | 454 |
| AjnI | CCWGG | 2 cut(s) | 74, 207 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 366, 398 |
| AluBI | AGCT | 4 cut(s) | 233, 239, 640, 650 |
| AluI | AGCT | 4 cut(s) | 233, 239, 640, 650 |
| Alw21I | GWGCWC | 1 cut(s) | 642 |
| Alw26I | GTCTC | 1 cut(s) | 370 |
| AlwI | GGATC | 2 cut(s) | 629, 699 |
| Ama87I | CYCGRG | 1 cut(s) | 197 |
| ApeKI | GCWGC | 2 cut(s) | 42, 257 |
| ApoI | RAATTY | 3 cut(s) | 11, 95, 506 |
| AseI | ATTAAT | 1 cut(s) | 654 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 483, 551 |
| AvaI | CYCGRG | 1 cut(s) | 197 |
| BanII | GRGCYC | 1 cut(s) | 642 |
| BbsI | GAAGAC | 2 cut(s) | 351, 554 |
| Bbv12I | GWGCWC | 1 cut(s) | 642 |
| BbvI | GCAGC | 2 cut(s) | 29, 269 |
| BccI | CCATC | 5 cut(s) | 170, 293, 420, 574, 612 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 593, 627 |
| BciT130I | CCWGG | 2 cut(s) | 76, 209 |
| BcoDI | GTCTC | 1 cut(s) | 370 |
| BfaI | CTAG | 4 cut(s) | 185, 204, 351, 416 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 266 |
| BisI | GCNGC | 2 cut(s) | 43, 258 |
| BlsI | GCNGC | 2 cut(s) | 44, 259 |
| Bme1390I | CCNGG | 2 cut(s) | 76, 209 |
| BmeT110I | CYCGRG | 1 cut(s) | 197 |
| BmrFI | CCNGG | 2 cut(s) | 76, 209 |
| BmsI | GCATC | 2 cut(s) | 172, 520 |
| BpiI | GAAGAC | 2 cut(s) | 351, 554 |
| BpmI | CTGGAG | 1 cut(s) | 305 |
| BpuEI | CTTGAG | 2 cut(s) | 152, 219 |
| Bsa29I | ATCGAT | 1 cut(s) | 603 |
| BsaI | GGTCTC | 1 cut(s) | 370 |
| BsaJI | CCNNGG | 1 cut(s) | 708 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 458, 488 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 307 |
| Bse1I | ACTGG | 2 cut(s) | 127, 322 |
| Bse3DI | GCAATG | 1 cut(s) | 540 |
| BseBI | CCWGG | 2 cut(s) | 76, 209 |
| BseCI | ATCGAT | 1 cut(s) | 603 |
| BseDI | CCNNGG | 1 cut(s) | 708 |
| BseGI | GGATG | 5 cut(s) | 217, 288, 316, 623, 678 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BseMI | GCAATG | 1 cut(s) | 540 |
| BseNI | ACTGG | 2 cut(s) | 127, 322 |
| BseXI | GCAGC | 2 cut(s) | 29, 269 |
| BshVI | ATCGAT | 1 cut(s) | 603 |
| BsiHKAI | GWGCWC | 1 cut(s) | 642 |
| BsiHKCI | CYCGRG | 1 cut(s) | 197 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BsmAI | GTCTC | 1 cut(s) | 370 |
| Bso31I | GGTCTC | 1 cut(s) | 370 |
| BsoBI | CYCGRG | 1 cut(s) | 197 |
| Bsp1286I | GDGCHC | 1 cut(s) | 642 |
| Bsp143I | GATC | 4 cut(s) | 100, 522, 621, 704 |
| BspACI | CCGC | 2 cut(s) | 40, 45 |
| BspDI | ATCGAT | 1 cut(s) | 603 |
| BspHI | TCATGA | 1 cut(s) | 634 |
| BspPI | GGATC | 2 cut(s) | 629, 699 |
| BspTNI | GGTCTC | 1 cut(s) | 370 |
| BsrDI | GCAATG | 1 cut(s) | 540 |
| BsrI | ACTGG | 2 cut(s) | 127, 322 |
| BssECI | CCNNGG | 1 cut(s) | 708 |
| BssMI | GATC | 4 cut(s) | 100, 522, 621, 704 |
| Bst2UI | CCWGG | 2 cut(s) | 76, 209 |
| Bst6I | CTCTTC | 1 cut(s) | 76 |
| BstC8I | GCNNGC | 2 cut(s) | 161, 231 |
| BstDEI | CTNAG | 2 cut(s) | 262, 588 |
| BstDSI | CCRYGG | 1 cut(s) | 708 |
| BstF5I | GGATG | 5 cut(s) | 217, 288, 316, 623, 678 |
| BstKTI | GATC | 4 cut(s) | 103, 525, 624, 707 |
| BstMAI | GTCTC | 1 cut(s) | 370 |
| BstMBI | GATC | 4 cut(s) | 100, 522, 621, 704 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 39, 245, 254, 266, 275 |
| BstNI | CCWGG | 2 cut(s) | 76, 209 |
| BstSCI | CCNGG | 2 cut(s) | 74, 207 |
| BstV1I | GCAGC | 2 cut(s) | 29, 269 |
| BstV2I | GAAGAC | 2 cut(s) | 351, 554 |
| BstX2I | RGATCY | 1 cut(s) | 704 |
| BstYI | RGATCY | 1 cut(s) | 704 |
| Bsu15I | ATCGAT | 1 cut(s) | 603 |
| BsuTUI | ATCGAT | 1 cut(s) | 603 |
| BtgI | CCRYGG | 1 cut(s) | 708 |
| BtsCI | GGATG | 5 cut(s) | 217, 288, 316, 623, 678 |
| Cac8I | GCNNGC | 2 cut(s) | 161, 231 |
| CciI | TCATGA | 1 cut(s) | 634 |
| ClaI | ATCGAT | 1 cut(s) | 603 |
| Csp6I | GTAC | 1 cut(s) | 325 |
| CviAII | CATG | 4 cut(s) | 149, 395, 635, 671 |
| CviQI | GTAC | 1 cut(s) | 325 |
| DdeI | CTNAG | 2 cut(s) | 262, 588 |
| DpnI | GATC | 4 cut(s) | 102, 524, 623, 706 |
| DpnII | GATC | 4 cut(s) | 100, 522, 621, 704 |
| Eam1104I | CTCTTC | 1 cut(s) | 76 |
| EarI | CTCTTC | 1 cut(s) | 76 |
| Ecl136II | GAGCTC | 1 cut(s) | 640 |
| Eco24I | GRGCYC | 1 cut(s) | 642 |
| Eco31I | GGTCTC | 1 cut(s) | 370 |
| Eco32I | GATATC | 1 cut(s) | 134 |
| Eco53kI | GAGCTC | 1 cut(s) | 640 |
| Eco88I | CYCGRG | 1 cut(s) | 197 |
| EcoICRI | GAGCTC | 1 cut(s) | 640 |
| EcoRII | CCWGG | 2 cut(s) | 74, 207 |
| EcoRV | GATATC | 1 cut(s) | 134 |
| EcoT38I | GRGCYC | 1 cut(s) | 642 |
| FaeI | CATG | 4 cut(s) | 152, 398, 638, 674 |
| FatI | CATG | 4 cut(s) | 148, 394, 634, 670 |
| FauNDI | CATATG | 1 cut(s) | 306 |
| Fnu4HI | GCNGC | 2 cut(s) | 43, 258 |
| FokI | GGATG | 5 cut(s) | 224, 275, 323, 630, 665 |
| FriOI | GRGCYC | 1 cut(s) | 642 |
| Fsp4HI | GCNGC | 2 cut(s) | 43, 258 |
| FspBI | CTAG | 4 cut(s) | 185, 204, 351, 416 |
| GluI | GCNGC | 2 cut(s) | 43, 258 |
| GsuI | CTGGAG | 1 cut(s) | 305 |
| Hin1II | CATG | 4 cut(s) | 152, 398, 638, 674 |
| HindIII | AAGCTT | 1 cut(s) | 237 |
| HinfI | GANTC | 3 cut(s) | 180, 398, 600 |
| Hpy188I | TCNGA | 2 cut(s) | 8, 478 |
| Hpy188III | TCNNGA | 7 cut(s) | 26, 129, 197, 410, 464, 635, 702 |
| HpyAV | CCTTC | 2 cut(s) | 348, 571 |
| HpyCH4IV | ACGT | 1 cut(s) | 390 |
| HpyCH4V | TGCA | 2 cut(s) | 533, 614 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 39, 245, 254, 266, 275 |
| HpyF3I | CTNAG | 2 cut(s) | 262, 588 |
| HpySE526I | ACGT | 1 cut(s) | 390 |
| Hsp92II | CATG | 4 cut(s) | 152, 398, 638, 674 |
| Kzo9I | GATC | 4 cut(s) | 100, 522, 621, 704 |
| LmnI | GCTCC | 2 cut(s) | 324, 647 |
| Lsp1109I | GCAGC | 2 cut(s) | 29, 269 |
| LweI | GCATC | 2 cut(s) | 172, 520 |
| MaeI | CTAG | 4 cut(s) | 185, 204, 351, 416 |
| MaeII | ACGT | 1 cut(s) | 390 |
| MaeIII | GTNAC | 2 cut(s) | 83, 568 |
| MalI | GATC | 4 cut(s) | 102, 524, 623, 706 |
| MboI | GATC | 4 cut(s) | 100, 522, 621, 704 |
| MboII | GAAGA | 6 cut(s) | 63, 353, 356, 386, 559, 700 |
| MflI | RGATCY | 1 cut(s) | 704 |
| MhlI | GDGCHC | 1 cut(s) | 642 |
| MluCI | AATT | 6 cut(s) | 11, 58, 95, 192, 506, 697 |
| MlyI | GAGTC | 1 cut(s) | 392 |
| MnlI | CCTC | 1 cut(s) | 259 |
| MroXI | GAANNNNTTC | 2 cut(s) | 483, 551 |
| MseI | TTAA | 3 cut(s) | 492, 609, 654 |
| MslI | CAYNNNNRTG | 2 cut(s) | 309, 683 |
| MspA1I | CMGCKG | 1 cut(s) | 42 |
| MspR9I | CCNGG | 2 cut(s) | 76, 209 |
| MvaI | CCWGG | 2 cut(s) | 76, 209 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 39, 245, 254, 266, 275 |
| NdeI | CATATG | 1 cut(s) | 306 |
| NdeII | GATC | 4 cut(s) | 100, 522, 621, 704 |
| NlaIII | CATG | 4 cut(s) | 152, 398, 638, 674 |
| NmuCI | GTSAC | 1 cut(s) | 568 |
| PaeR7I | CTCGAG | 1 cut(s) | 197 |
| PagI | TCATGA | 1 cut(s) | 634 |
| PdmI | GAANNNNTTC | 2 cut(s) | 483, 551 |
| PfeI | GAWTC | 2 cut(s) | 180, 600 |
| PfoI | TCCNGGA | 1 cut(s) | 74 |
| PkrI | GCNGC | 2 cut(s) | 44, 259 |
| PleI | GAGTC | 1 cut(s) | 392 |
| PpsI | GAGTC | 1 cut(s) | 392 |
| PshBI | ATTAAT | 1 cut(s) | 654 |
| Psp124BI | GAGCTC | 1 cut(s) | 642 |
| Psp6I | CCWGG | 2 cut(s) | 74, 207 |
| PspGI | CCWGG | 2 cut(s) | 74, 207 |
| PsuI | RGATCY | 1 cut(s) | 704 |
| RsaI | GTAC | 1 cut(s) | 326 |
| RsaNI | GTAC | 1 cut(s) | 325 |
| RseI | CAYNNNNRTG | 2 cut(s) | 309, 683 |
| SacI | GAGCTC | 1 cut(s) | 642 |
| SaqAI | TTAA | 3 cut(s) | 492, 609, 654 |
| SatI | GCNGC | 2 cut(s) | 43, 258 |
| Sau3AI | GATC | 4 cut(s) | 100, 522, 621, 704 |
| SchI | GAGTC | 1 cut(s) | 392 |
| ScrFI | CCNGG | 2 cut(s) | 76, 209 |
| SduI | GDGCHC | 1 cut(s) | 642 |
| SfaNI | GCATC | 2 cut(s) | 172, 520 |
| Sfr274I | CTCGAG | 1 cut(s) | 197 |
| SlaI | CTCGAG | 1 cut(s) | 197 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 309, 683 |
| SmlI | CTYRAG | 3 cut(s) | 167, 197, 234 |
| SmoI | CTYRAG | 3 cut(s) | 167, 197, 234 |
| Sse9I | AATT | 6 cut(s) | 11, 58, 95, 192, 506, 697 |
| SsiI | CCGC | 2 cut(s) | 40, 45 |
| SspMI | CTAG | 4 cut(s) | 185, 204, 351, 416 |
| SstI | GAGCTC | 1 cut(s) | 642 |
| StyD4I | CCNGG | 2 cut(s) | 74, 207 |
| TaiI | ACGT | 1 cut(s) | 393 |
| TaqI | TCGA | 5 cut(s) | 198, 372, 598, 603, 701 |
| TasI | AATT | 6 cut(s) | 11, 58, 95, 192, 506, 697 |
| TfiI | GAWTC | 2 cut(s) | 180, 600 |
| Tru1I | TTAA | 3 cut(s) | 492, 609, 654 |
| Tru9I | TTAA | 3 cut(s) | 492, 609, 654 |
| TseFI | GTSAC | 1 cut(s) | 568 |
| TseI | GCWGC | 2 cut(s) | 42, 257 |
| Tsp45I | GTSAC | 1 cut(s) | 568 |
| TspDTI | ATGAA | 7 cut(s) | 99, 137, 350, 354, 518, 564, 623 |
| TspGWI | ACGGA | 1 cut(s) | 697 |
| VspI | ATTAAT | 1 cut(s) | 654 |
| XapI | RAATTY | 3 cut(s) | 11, 95, 506 |
| XhoI | CTCGAG | 1 cut(s) | 197 |
| XmnI | GAANNNNTTC | 2 cut(s) | 483, 551 |
| XspI | CTAG | 4 cut(s) | 185, 204, 351, 416 |