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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 398 |
| AccB1I | GGYRCC | 2 cut(s) | 464, 545 |
| AccII | CGCG | 1 cut(s) | 339 |
| AccIII | TCCGGA | 1 cut(s) | 319 |
| AciI | CCGC | 3 cut(s) | 79, 432, 468 |
| AclWI | GGATC | 1 cut(s) | 116 |
| AcsI | RAATTY | 1 cut(s) | 613 |
| AcyI | GRCGYC | 2 cut(s) | 516, 528 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 490, 494 |
| AgsI | TTSAA | 2 cut(s) | 109, 581 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 2 cut(s) | 155, 161 |
| AluI | AGCT | 2 cut(s) | 155, 161 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AlwI | GGATC | 1 cut(s) | 116 |
| Aor13HI | TCCGGA | 1 cut(s) | 319 |
| ApeKI | GCWGC | 1 cut(s) | 560 |
| ApoI | RAATTY | 1 cut(s) | 613 |
| AspA2I | CCTAGG | 2 cut(s) | 488, 550 |
| AspLEI | GCGC | 2 cut(s) | 341, 500 |
| AspS9I | GGNCC | 1 cut(s) | 400 |
| AsuHPI | GGTGA | 3 cut(s) | 551, 559, 566 |
| AvaII | GGWCC | 1 cut(s) | 400 |
| AvrII | CCTAGG | 2 cut(s) | 488, 550 |
| BaeGI | GKGCMC | 1 cut(s) | 467 |
| BanI | GGYRCC | 2 cut(s) | 464, 545 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BbvI | GCAGC | 1 cut(s) | 547 |
| BccI | CCATC | 6 cut(s) | 57, 92, 215, 518, 536, 540 |
| BciVI | GTATCC | 1 cut(s) | 375 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 3 cut(s) | 126, 489, 551 |
| BfuI | GTATCC | 1 cut(s) | 375 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 561 |
| BlnI | CCTAGG | 2 cut(s) | 488, 550 |
| BlsI | GCNGC | 1 cut(s) | 562 |
| Bme18I | GGWCC | 1 cut(s) | 400 |
| BmgT120I | GGNCC | 1 cut(s) | 400 |
| BmiI | GGNNCC | 3 cut(s) | 356, 466, 547 |
| BmsI | GCATC | 2 cut(s) | 94, 547 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| Bpu10I | CCTNAGC | 1 cut(s) | 599 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BsaHI | GRCGYC | 2 cut(s) | 516, 528 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 3 cut(s) | 488, 519, 550 |
| BsaWI | WCCGGW | 1 cut(s) | 319 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 490, 494 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseAI | TCCGGA | 1 cut(s) | 319 |
| BseDI | CCNNGG | 3 cut(s) | 488, 519, 550 |
| BseGI | GGATG | 2 cut(s) | 210, 529 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 490, 494 |
| BseMII | CTCAG | 2 cut(s) | 486, 613 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 467 |
| BseXI | GCAGC | 1 cut(s) | 547 |
| Bsh1236I | CGCG | 1 cut(s) | 339 |
| BshNI | GGYRCC | 2 cut(s) | 464, 545 |
| BsiSI | CCGG | 1 cut(s) | 320 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 490, 494 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| Bsp1286I | GDGCHC | 1 cut(s) | 467 |
| Bsp13I | TCCGGA | 1 cut(s) | 319 |
| Bsp143I | GATC | 1 cut(s) | 121 |
| Bsp19I | CCATGG | 1 cut(s) | 519 |
| BspACI | CCGC | 3 cut(s) | 79, 432, 468 |
| BspCNI | CTCAG | 2 cut(s) | 485, 612 |
| BspEI | TCCGGA | 1 cut(s) | 319 |
| BspFNI | CGCG | 1 cut(s) | 339 |
| BspLI | GGNNCC | 3 cut(s) | 356, 466, 547 |
| BspPI | GGATC | 1 cut(s) | 116 |
| BspT107I | GGYRCC | 2 cut(s) | 464, 545 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 3 cut(s) | 488, 519, 550 |
| BssMI | GATC | 1 cut(s) | 121 |
| BssNI | GRCGYC | 2 cut(s) | 516, 528 |
| BssT1I | CCWWGG | 3 cut(s) | 488, 519, 550 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 2 cut(s) | 516, 528 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 496 |
| BstDEI | CTNAG | 6 cut(s) | 184, 345, 376, 472, 599, 666 |
| BstDSI | CCRYGG | 1 cut(s) | 519 |
| BstEII | GGTNACC | 1 cut(s) | 427 |
| BstF5I | GGATG | 2 cut(s) | 210, 529 |
| BstFNI | CGCG | 1 cut(s) | 339 |
| BstHHI | GCGC | 2 cut(s) | 341, 500 |
| BstKTI | GATC | 1 cut(s) | 124 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 1 cut(s) | 121 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 188, 197 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstPI | GGTNACC | 1 cut(s) | 427 |
| BstSLI | GKGCMC | 1 cut(s) | 467 |
| BstUI | CGCG | 1 cut(s) | 339 |
| BstV1I | GCAGC | 1 cut(s) | 547 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BsuI | GTATCC | 1 cut(s) | 375 |
| BtgI | CCRYGG | 1 cut(s) | 519 |
| BtsCI | GGATG | 2 cut(s) | 210, 529 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 496 |
| CfoI | GCGC | 2 cut(s) | 341, 500 |
| Cfr13I | GGNCC | 1 cut(s) | 400 |
| CseI | GACGC | 3 cut(s) | 517, 524, 604 |
| CviAII | CATG | 4 cut(s) | 136, 512, 520, 536 |
| DdeI | CTNAG | 6 cut(s) | 184, 345, 376, 472, 599, 666 |
| DpnI | GATC | 1 cut(s) | 123 |
| DpnII | GATC | 1 cut(s) | 121 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 398 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 398 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 3 cut(s) | 488, 519, 550 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 400 |
| Eco91I | GGTNACC | 1 cut(s) | 427 |
| EcoO65I | GGTNACC | 1 cut(s) | 427 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT14I | CCWWGG | 3 cut(s) | 488, 519, 550 |
| ErhI | CCWWGG | 3 cut(s) | 488, 519, 550 |
| FaeI | CATG | 4 cut(s) | 139, 515, 523, 539 |
| FatI | CATG | 4 cut(s) | 135, 511, 519, 535 |
| Fnu4HI | GCNGC | 1 cut(s) | 561 |
| FokI | GGATG | 2 cut(s) | 197, 536 |
| Fsp4HI | GCNGC | 1 cut(s) | 561 |
| FspBI | CTAG | 3 cut(s) | 126, 489, 551 |
| GlaI | GCGC | 2 cut(s) | 340, 499 |
| GluI | GCNGC | 1 cut(s) | 561 |
| HapII | CCGG | 1 cut(s) | 320 |
| HgaI | GACGC | 3 cut(s) | 517, 524, 604 |
| HhaI | GCGC | 2 cut(s) | 341, 500 |
| Hin1I | GRCGYC | 2 cut(s) | 516, 528 |
| Hin1II | CATG | 4 cut(s) | 139, 515, 523, 539 |
| Hin6I | GCGC | 2 cut(s) | 339, 498 |
| HinP1I | GCGC | 2 cut(s) | 339, 498 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 236, 323, 577 |
| HpaII | CCGG | 1 cut(s) | 320 |
| HphI | GGTGA | 3 cut(s) | 551, 559, 566 |
| Hpy166II | GTNNAC | 1 cut(s) | 478 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 594 |
| Hpy188III | TCNNGA | 5 cut(s) | 71, 106, 119, 320, 389 |
| Hpy8I | GTNNAC | 1 cut(s) | 478 |
| HpyAV | CCTTC | 3 cut(s) | 270, 345, 418 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 393 |
| HpyCH4V | TGCA | 1 cut(s) | 563 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 188, 197 |
| HpyF3I | CTNAG | 6 cut(s) | 184, 345, 376, 472, 599, 666 |
| HpySE526I | ACGT | 1 cut(s) | 393 |
| Hsp92I | GRCGYC | 2 cut(s) | 516, 528 |
| Hsp92II | CATG | 4 cut(s) | 139, 515, 523, 539 |
| HspAI | GCGC | 2 cut(s) | 339, 498 |
| Kpn2I | TCCGGA | 1 cut(s) | 319 |
| Kzo9I | GATC | 1 cut(s) | 121 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 354 |
| Lsp1109I | GCAGC | 1 cut(s) | 547 |
| LweI | GCATC | 2 cut(s) | 94, 547 |
| MaeI | CTAG | 3 cut(s) | 126, 489, 551 |
| MaeII | ACGT | 1 cut(s) | 393 |
| MaeIII | GTNAC | 2 cut(s) | 5, 427 |
| MalI | GATC | 1 cut(s) | 123 |
| MboI | GATC | 1 cut(s) | 121 |
| MboII | GAAGA | 3 cut(s) | 275, 278, 308 |
| MhlI | GDGCHC | 1 cut(s) | 467 |
| MluCI | AATT | 3 cut(s) | 17, 328, 613 |
| MlyI | GAGTC | 1 cut(s) | 214 |
| MnlI | CCTC | 4 cut(s) | 181, 454, 481, 648 |
| MroI | TCCGGA | 1 cut(s) | 319 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 537, 540 |
| MspI | CCGG | 1 cut(s) | 320 |
| MvnI | CGCG | 1 cut(s) | 339 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 188, 197 |
| NcoI | CCATGG | 1 cut(s) | 519 |
| NdeII | GATC | 1 cut(s) | 121 |
| NlaIII | CATG | 4 cut(s) | 139, 515, 523, 539 |
| NlaIV | GGNNCC | 3 cut(s) | 356, 466, 547 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PfeI | GAWTC | 5 cut(s) | 102, 115, 236, 323, 577 |
| PkrI | GCNGC | 1 cut(s) | 562 |
| PleI | GAGTC | 1 cut(s) | 214 |
| PpsI | GAGTC | 1 cut(s) | 214 |
| PspEI | GGTNACC | 1 cut(s) | 427 |
| PspN4I | GGNNCC | 3 cut(s) | 356, 466, 547 |
| PspPI | GGNCC | 1 cut(s) | 400 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 537, 540 |
| SatI | GCNGC | 1 cut(s) | 561 |
| Sau3AI | GATC | 1 cut(s) | 121 |
| Sau96I | GGNCC | 1 cut(s) | 400 |
| SchI | GAGTC | 1 cut(s) | 214 |
| SduI | GDGCHC | 1 cut(s) | 467 |
| SetI | ASST | 9 cut(s) | 12, 96, 157, 163, 372, 396, 429, 556, 640 |
| SfaNI | GCATC | 2 cut(s) | 94, 547 |
| SinI | GGWCC | 1 cut(s) | 400 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 537, 540 |
| SmlI | CTYRAG | 2 cut(s) | 89, 156 |
| SmoI | CTYRAG | 2 cut(s) | 89, 156 |
| Sse9I | AATT | 3 cut(s) | 17, 328, 613 |
| SsiI | CCGC | 3 cut(s) | 79, 432, 468 |
| SspMI | CTAG | 3 cut(s) | 126, 489, 551 |
| StyI | CCWWGG | 3 cut(s) | 488, 519, 550 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 396 |
| TaqI | TCGA | 3 cut(s) | 96, 120, 294 |
| TasI | AATT | 3 cut(s) | 17, 328, 613 |
| TfiI | GAWTC | 5 cut(s) | 102, 115, 236, 323, 577 |
| TseI | GCWGC | 1 cut(s) | 560 |
| TspDTI | ATGAA | 2 cut(s) | 272, 276 |
| VpaK11BI | GGWCC | 1 cut(s) | 400 |
| XapI | RAATTY | 1 cut(s) | 613 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 491, 539 |
| XmaJI | CCTAGG | 2 cut(s) | 488, 550 |
| XspI | CTAG | 3 cut(s) | 126, 489, 551 |