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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 354 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 660 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 691, 829 |
| AccI | GTMKAC | 1 cut(s) | 652 |
| AciI | CCGC | 2 cut(s) | 275, 987 |
| AclWI | GGATC | 2 cut(s) | 380, 550 |
| AcsI | RAATTY | 2 cut(s) | 142, 993 |
| AcuI | CTGAAG | 1 cut(s) | 579 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 199, 369, 691, 829 |
| AflIII | ACRYGT | 1 cut(s) | 862 |
| AgsI | TTSAA | 4 cut(s) | 104, 331, 428, 853 |
| AhlI | ACTAGT | 1 cut(s) | 578 |
| AjiI | CACGTC | 2 cut(s) | 599, 641 |
| AluBI | AGCT | 2 cut(s) | 287, 845 |
| AluI | AGCT | 2 cut(s) | 287, 845 |
| Alw26I | GTCTC | 3 cut(s) | 534, 863, 943 |
| AlwI | GGATC | 2 cut(s) | 380, 550 |
| AoxI | GGCC | 5 cut(s) | 201, 242, 414, 694, 790 |
| ApaI | GGGCCC | 2 cut(s) | 205, 698 |
| ApeKI | GCWGC | 1 cut(s) | 472 |
| ApoI | RAATTY | 2 cut(s) | 142, 993 |
| AspLEI | GCGC | 1 cut(s) | 309 |
| AspS9I | GGNCC | 4 cut(s) | 201, 202, 694, 695 |
| AsuHPI | GGTGA | 2 cut(s) | 367, 487 |
| AsuNHI | GCTAGC | 1 cut(s) | 4 |
| AxyI | CCTNAGG | 1 cut(s) | 239 |
| BaeGI | GKGCMC | 2 cut(s) | 205, 698 |
| BanII | GRGCYC | 3 cut(s) | 205, 698, 802 |
| BbsI | GAAGAC | 2 cut(s) | 765, 825 |
| BbvI | GCAGC | 1 cut(s) | 484 |
| BccI | CCATC | 2 cut(s) | 321, 327 |
| BclI | TGATCA | 1 cut(s) | 738 |
| BcoDI | GTCTC | 3 cut(s) | 534, 863, 943 |
| BcuI | ACTAGT | 1 cut(s) | 578 |
| BfaI | CTAG | 2 cut(s) | 5, 579 |
| BfmI | CTRYAG | 1 cut(s) | 537 |
| BisI | GCNGC | 1 cut(s) | 473 |
| BlsI | GCNGC | 1 cut(s) | 474 |
| BmgBI | CACGTC | 2 cut(s) | 599, 641 |
| BmgT120I | GGNCC | 4 cut(s) | 201, 202, 694, 695 |
| BmiI | GGNNCC | 2 cut(s) | 203, 696 |
| BmsI | GCATC | 1 cut(s) | 199 |
| BmtI | GCTAGC | 1 cut(s) | 8 |
| BpiI | GAAGAC | 2 cut(s) | 765, 825 |
| Bpu10I | CCTNAGC | 1 cut(s) | 288 |
| BsaJI | CCNNGG | 3 cut(s) | 628, 698, 896 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 390, 420 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 199, 369, 691, 829 |
| Bse21I | CCTNAGG | 1 cut(s) | 239 |
| BseDI | CCNNGG | 3 cut(s) | 628, 698, 896 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 199, 369, 691, 829 |
| BseMII | CTCAG | 3 cut(s) | 279, 425, 954 |
| BseSI | GKGCMC | 2 cut(s) | 205, 698 |
| BseXI | GCAGC | 1 cut(s) | 484 |
| BsgI | GTGCAG | 1 cut(s) | 834 |
| BshFI | GGCC | 5 cut(s) | 203, 244, 416, 696, 792 |
| BslFI | GGGAC | 1 cut(s) | 256 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 199, 369, 691, 829 |
| BsmAI | GTCTC | 3 cut(s) | 534, 863, 943 |
| BsmFI | GGGAC | 1 cut(s) | 256 |
| BsmI | GAATGC | 1 cut(s) | 571 |
| BsnI | GGCC | 5 cut(s) | 203, 244, 416, 696, 792 |
| Bsp120I | GGGCCC | 2 cut(s) | 201, 694 |
| Bsp1286I | GDGCHC | 3 cut(s) | 205, 698, 802 |
| Bsp143I | GATC | 4 cut(s) | 372, 508, 542, 738 |
| BspACI | CCGC | 2 cut(s) | 275, 987 |
| BspANI | GGCC | 5 cut(s) | 203, 244, 416, 696, 792 |
| BspCNI | CTCAG | 3 cut(s) | 278, 424, 953 |
| BspLI | GGNNCC | 2 cut(s) | 203, 696 |
| BspOI | GCTAGC | 1 cut(s) | 8 |
| BspPI | GGATC | 2 cut(s) | 380, 550 |
| BssECI | CCNNGG | 3 cut(s) | 628, 698, 896 |
| BssMI | GATC | 4 cut(s) | 372, 508, 542, 738 |
| BssT1I | CCWWGG | 2 cut(s) | 698, 896 |
| Bst4CI | ACNGT | 3 cut(s) | 406, 629, 764 |
| BstC8I | GCNNGC | 2 cut(s) | 6, 802 |
| BstDEI | CTNAG | 7 cut(s) | 239, 265, 288, 411, 773, 909, 940 |
| BstDSI | CCRYGG | 1 cut(s) | 628 |
| BstHHI | GCGC | 1 cut(s) | 309 |
| BstKTI | GATC | 4 cut(s) | 375, 511, 545, 741 |
| BstMAI | GTCTC | 3 cut(s) | 534, 863, 943 |
| BstMBI | GATC | 4 cut(s) | 372, 508, 542, 738 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 209 |
| BstNSI | RCATGY | 2 cut(s) | 123, 866 |
| BstSFI | CTRYAG | 1 cut(s) | 537 |
| BstSLI | GKGCMC | 2 cut(s) | 205, 698 |
| BstV1I | GCAGC | 1 cut(s) | 484 |
| BstV2I | GAAGAC | 2 cut(s) | 765, 825 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 629 |
| Bsu36I | CCTNAGG | 1 cut(s) | 239 |
| BsuRI | GGCC | 5 cut(s) | 203, 244, 416, 696, 792 |
| BtgI | CCRYGG | 1 cut(s) | 628 |
| BtrI | CACGTC | 2 cut(s) | 599, 641 |
| BtsIMutI | CAGTG | 2 cut(s) | 555, 769 |
| Cac8I | GCNNGC | 2 cut(s) | 6, 802 |
| CfoI | GCGC | 1 cut(s) | 309 |
| Cfr13I | GGNCC | 4 cut(s) | 201, 202, 694, 695 |
| CseI | GACGC | 1 cut(s) | 258 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 34, 69, 580, 615 |
| CviAII | CATG | 8 cut(s) | 60, 120, 130, 364, 449, 587, 611, 863 |
| DdeI | CTNAG | 7 cut(s) | 239, 265, 288, 411, 773, 909, 940 |
| DpnI | GATC | 4 cut(s) | 374, 510, 544, 740 |
| DpnII | GATC | 4 cut(s) | 372, 508, 542, 738 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 660 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 660 |
| Eco130I | CCWWGG | 2 cut(s) | 698, 896 |
| Eco147I | AGGCCT | 1 cut(s) | 244 |
| Eco24I | GRGCYC | 3 cut(s) | 205, 698, 802 |
| Eco57I | CTGAAG | 1 cut(s) | 579 |
| Eco81I | CCTNAGG | 1 cut(s) | 239 |
| EcoO109I | RGGNCCY | 1 cut(s) | 202 |
| EcoRI | GAATTC | 1 cut(s) | 993 |
| EcoT14I | CCWWGG | 2 cut(s) | 698, 896 |
| EcoT22I | ATGCAT | 1 cut(s) | 121 |
| EcoT38I | GRGCYC | 3 cut(s) | 205, 698, 802 |
| ErhI | CCWWGG | 2 cut(s) | 698, 896 |
| FaeI | CATG | 8 cut(s) | 63, 123, 133, 367, 452, 590, 614, 866 |
| FaqI | GGGAC | 1 cut(s) | 256 |
| FatI | CATG | 8 cut(s) | 59, 119, 129, 363, 448, 586, 610, 862 |
| FauI | CCCGC | 1 cut(s) | 282 |
| FbaI | TGATCA | 1 cut(s) | 738 |
| FblI | GTMKAC | 1 cut(s) | 652 |
| Fnu4HI | GCNGC | 1 cut(s) | 473 |
| FriOI | GRGCYC | 3 cut(s) | 205, 698, 802 |
| Fsp4HI | GCNGC | 1 cut(s) | 473 |
| FspBI | CTAG | 2 cut(s) | 5, 579 |
| GlaI | GCGC | 1 cut(s) | 308 |
| GluI | GCNGC | 1 cut(s) | 473 |
| HaeIII | GGCC | 5 cut(s) | 203, 244, 416, 696, 792 |
| HgaI | GACGC | 1 cut(s) | 258 |
| HhaI | GCGC | 1 cut(s) | 309 |
| Hin1II | CATG | 8 cut(s) | 63, 123, 133, 367, 452, 590, 614, 866 |
| Hin6I | GCGC | 1 cut(s) | 307 |
| HinP1I | GCGC | 1 cut(s) | 307 |
| HincII | GTYRAC | 1 cut(s) | 653 |
| HindII | GTYRAC | 1 cut(s) | 653 |
| HindIII | AAGCTT | 1 cut(s) | 843 |
| HinfI | GANTC | 5 cut(s) | 66, 217, 388, 492, 902 |
| HphI | GGTGA | 2 cut(s) | 367, 487 |
| Hpy166II | GTNNAC | 2 cut(s) | 653, 955 |
| Hpy188I | TCNGA | 4 cut(s) | 508, 735, 892, 943 |
| Hpy188III | TCNNGA | 5 cut(s) | 101, 224, 370, 952, 998 |
| Hpy8I | GTNNAC | 2 cut(s) | 653, 955 |
| HpyAV | CCTTC | 6 cut(s) | 22, 49, 251, 325, 445, 600 |
| HpyCH4III | ACNGT | 3 cut(s) | 406, 629, 764 |
| HpyCH4IV | ACGT | 3 cut(s) | 336, 598, 640 |
| HpyCH4V | TGCA | 2 cut(s) | 119, 815 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 209 |
| HpyF3I | CTNAG | 7 cut(s) | 239, 265, 288, 411, 773, 909, 940 |
| HpySE526I | ACGT | 3 cut(s) | 336, 598, 640 |
| Hsp92II | CATG | 8 cut(s) | 63, 123, 133, 367, 452, 590, 614, 866 |
| HspAI | GCGC | 1 cut(s) | 307 |
| Ksp22I | TGATCA | 1 cut(s) | 738 |
| Kzo9I | GATC | 4 cut(s) | 372, 508, 542, 738 |
| LpnPI | CCDG | 9 cut(s) | 165, 206, 308, 355, 398, 525, 698, 820, 997 |
| Lsp1109I | GCAGC | 1 cut(s) | 484 |
| LweI | GCATC | 1 cut(s) | 199 |
| MaeI | CTAG | 2 cut(s) | 5, 579 |
| MaeII | ACGT | 3 cut(s) | 336, 598, 640 |
| MaeIII | GTNAC | 1 cut(s) | 406 |
| MalI | GATC | 4 cut(s) | 374, 510, 544, 740 |
| MboI | GATC | 4 cut(s) | 372, 508, 542, 738 |
| MboII | GAAGA | 3 cut(s) | 145, 770, 830 |
| MhlI | GDGCHC | 3 cut(s) | 205, 698, 802 |
| MluCI | AATT | 5 cut(s) | 142, 152, 355, 967, 993 |
| MmeI | TCCRAC | 1 cut(s) | 45 |
| MnlI | CCTC | 5 cut(s) | 28, 388, 463, 482, 756 |
| Mph1103I | ATGCAT | 1 cut(s) | 121 |
| MslI | CAYNNNNRTG | 4 cut(s) | 134, 627, 639, 753 |
| MspA1I | CMGCKG | 1 cut(s) | 987 |
| Mva1269I | GAATGC | 1 cut(s) | 571 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 209 |
| NdeII | GATC | 4 cut(s) | 372, 508, 542, 738 |
| NheI | GCTAGC | 1 cut(s) | 4 |
| NlaIII | CATG | 8 cut(s) | 63, 123, 133, 367, 452, 590, 614, 866 |
| NlaIV | GGNNCC | 2 cut(s) | 203, 696 |
| NmeAIII | GCCGAG | 1 cut(s) | 238 |
| NsiI | ATGCAT | 1 cut(s) | 121 |
| NspI | RCATGY | 2 cut(s) | 123, 866 |
| PceI | AGGCCT | 1 cut(s) | 244 |
| PciI | ACATGT | 1 cut(s) | 862 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 808 |
| PctI | GAATGC | 1 cut(s) | 571 |
| PfeI | GAWTC | 5 cut(s) | 66, 217, 388, 492, 902 |
| PflFI | GACNNNGTC | 1 cut(s) | 642 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 691, 829 |
| PkrI | GCNGC | 1 cut(s) | 474 |
| PscI | ACATGT | 1 cut(s) | 862 |
| PsiI | TTATAA | 1 cut(s) | 354 |
| PspN4I | GGNNCC | 2 cut(s) | 203, 696 |
| PspOMI | GGGCCC | 2 cut(s) | 201, 694 |
| PspPI | GGNCC | 4 cut(s) | 201, 202, 694, 695 |
| PsyI | GACNNNGTC | 1 cut(s) | 642 |
| RseI | CAYNNNNRTG | 4 cut(s) | 134, 627, 639, 753 |
| SalI | GTCGAC | 1 cut(s) | 651 |
| SatI | GCNGC | 1 cut(s) | 473 |
| Sau3AI | GATC | 4 cut(s) | 372, 508, 542, 738 |
| Sau96I | GGNCC | 4 cut(s) | 201, 202, 694, 695 |
| SduI | GDGCHC | 3 cut(s) | 205, 698, 802 |
| SfaNI | GCATC | 1 cut(s) | 199 |
| SfcI | CTRYAG | 1 cut(s) | 537 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 134, 627, 639, 753 |
| SpeI | ACTAGT | 1 cut(s) | 578 |
| Sse9I | AATT | 5 cut(s) | 142, 152, 355, 967, 993 |
| SseBI | AGGCCT | 1 cut(s) | 244 |
| SsiI | CCGC | 2 cut(s) | 275, 987 |
| SspI | AATATT | 1 cut(s) | 503 |
| SspMI | CTAG | 2 cut(s) | 5, 579 |
| StuI | AGGCCT | 1 cut(s) | 244 |
| StyI | CCWWGG | 2 cut(s) | 698, 896 |
| TaaI | ACNGT | 3 cut(s) | 406, 629, 764 |
| TaiI | ACGT | 3 cut(s) | 339, 601, 643 |
| TaqI | TCGA | 2 cut(s) | 225, 652 |
| TasI | AATT | 5 cut(s) | 142, 152, 355, 967, 993 |
| TfiI | GAWTC | 5 cut(s) | 66, 217, 388, 492, 902 |
| TscAI | CASTG | 2 cut(s) | 562, 769 |
| TseI | GCWGC | 1 cut(s) | 472 |
| TspDTI | ATGAA | 7 cut(s) | 58, 146, 209, 401, 437, 771, 894 |
| TspRI | CASTG | 2 cut(s) | 562, 769 |
| Tth111I | GACNNNGTC | 1 cut(s) | 642 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 691, 829 |
| XapI | RAATTY | 2 cut(s) | 142, 993 |
| XceI | RCATGY | 2 cut(s) | 123, 866 |
| XmiI | GTMKAC | 1 cut(s) | 652 |
| XspI | CTAG | 2 cut(s) | 5, 579 |
| Zsp2I | ATGCAT | 1 cut(s) | 121 |