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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 30 |
| AccB1I | GGYRCC | 1 cut(s) | 755 |
| AccII | CGCG | 1 cut(s) | 133 |
| AccIII | TCCGGA | 1 cut(s) | 655 |
| AciI | CCGC | 3 cut(s) | 42, 367, 897 |
| AclWI | GGATC | 1 cut(s) | 627 |
| AcoI | YGGCCR | 1 cut(s) | 676 |
| AcsI | RAATTY | 1 cut(s) | 434 |
| AgsI | TTSAA | 2 cut(s) | 382, 793 |
| AjiI | CACGTC | 1 cut(s) | 217 |
| AjnI | CCWGG | 1 cut(s) | 210 |
| AleI | CACNNNNGTG | 1 cut(s) | 36 |
| AluBI | AGCT | 5 cut(s) | 236, 568, 578, 878, 929 |
| AluI | AGCT | 5 cut(s) | 236, 568, 578, 878, 929 |
| Alw21I | GWGCWC | 2 cut(s) | 570, 880 |
| Alw26I | GTCTC | 1 cut(s) | 502 |
| AlwI | GGATC | 1 cut(s) | 627 |
| Aor13HI | TCCGGA | 1 cut(s) | 655 |
| AoxI | GGCC | 1 cut(s) | 676 |
| ApeKI | GCWGC | 4 cut(s) | 20, 57, 76, 260 |
| ApoI | RAATTY | 1 cut(s) | 434 |
| AspLEI | GCGC | 3 cut(s) | 31, 135, 799 |
| AsuHPI | GGTGA | 1 cut(s) | 886 |
| BaeGI | GKGCMC | 1 cut(s) | 865 |
| BalI | TGGCCA | 1 cut(s) | 678 |
| BanI | GGYRCC | 1 cut(s) | 755 |
| BanII | GRGCYC | 2 cut(s) | 570, 880 |
| BauI | CACGAG | 1 cut(s) | 879 |
| BbsI | GAAGAC | 1 cut(s) | 482 |
| Bbv12I | GWGCWC | 2 cut(s) | 570, 880 |
| BbvI | GCAGC | 4 cut(s) | 32, 63, 69, 272 |
| BccI | CCATC | 3 cut(s) | 296, 348, 502 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 83, 117, 521, 555 |
| BciT130I | CCWGG | 1 cut(s) | 212 |
| BclI | TGATCA | 1 cut(s) | 853 |
| BcoDI | GTCTC | 1 cut(s) | 502 |
| BfaI | CTAG | 2 cut(s) | 344, 965 |
| BfmI | CTRYAG | 2 cut(s) | 18, 55 |
| BfoI | RGCGCY | 1 cut(s) | 800 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 269 |
| BisI | GCNGC | 5 cut(s) | 21, 42, 58, 77, 261 |
| BlsI | GCNGC | 5 cut(s) | 22, 43, 59, 78, 262 |
| Bme1390I | CCNGG | 1 cut(s) | 212 |
| BmgBI | CACGTC | 1 cut(s) | 217 |
| BmiI | GGNNCC | 2 cut(s) | 698, 757 |
| BmrFI | CCNGG | 1 cut(s) | 212 |
| BpiI | GAAGAC | 1 cut(s) | 482 |
| Bsa29I | ATCGAT | 1 cut(s) | 531 |
| BsaJI | CCNNGG | 1 cut(s) | 636 |
| BsaWI | WCCGGW | 1 cut(s) | 655 |
| Bse1I | ACTGG | 1 cut(s) | 196 |
| Bse3DI | GCAATG | 1 cut(s) | 927 |
| BseAI | TCCGGA | 1 cut(s) | 655 |
| BseBI | CCWGG | 1 cut(s) | 212 |
| BseCI | ATCGAT | 1 cut(s) | 531 |
| BseDI | CCNNGG | 1 cut(s) | 636 |
| BseGI | GGATG | 2 cut(s) | 291, 606 |
| BseMI | GCAATG | 1 cut(s) | 927 |
| BseMII | CTCAG | 1 cut(s) | 417 |
| BseNI | ACTGG | 1 cut(s) | 196 |
| BseSI | GKGCMC | 1 cut(s) | 865 |
| BseXI | GCAGC | 4 cut(s) | 32, 63, 69, 272 |
| BsgI | GTGCAG | 1 cut(s) | 132 |
| Bsh1236I | CGCG | 1 cut(s) | 133 |
| BshFI | GGCC | 1 cut(s) | 678 |
| BshNI | GGYRCC | 1 cut(s) | 755 |
| BshVI | ATCGAT | 1 cut(s) | 531 |
| BsiHKAI | GWGCWC | 2 cut(s) | 570, 880 |
| BsiSI | CCGG | 1 cut(s) | 656 |
| BsmAI | GTCTC | 1 cut(s) | 502 |
| BsmBI | CGTCTC | 1 cut(s) | 502 |
| BsnI | GGCC | 1 cut(s) | 678 |
| Bsp1286I | GDGCHC | 3 cut(s) | 570, 865, 880 |
| Bsp13I | TCCGGA | 1 cut(s) | 655 |
| Bsp143I | GATC | 6 cut(s) | 115, 450, 632, 853, 949, 961 |
| BspACI | CCGC | 3 cut(s) | 42, 367, 897 |
| BspANI | GGCC | 1 cut(s) | 678 |
| BspCNI | CTCAG | 1 cut(s) | 416 |
| BspDI | ATCGAT | 1 cut(s) | 531 |
| BspEI | TCCGGA | 1 cut(s) | 655 |
| BspFNI | CGCG | 1 cut(s) | 133 |
| BspHI | TCATGA | 1 cut(s) | 562 |
| BspLI | GGNNCC | 2 cut(s) | 698, 757 |
| BspMAI | CTGCAG | 2 cut(s) | 22, 59 |
| BspPI | GGATC | 1 cut(s) | 627 |
| BspT107I | GGYRCC | 1 cut(s) | 755 |
| BsrDI | GCAATG | 1 cut(s) | 927 |
| BsrI | ACTGG | 1 cut(s) | 196 |
| BssECI | CCNNGG | 1 cut(s) | 636 |
| BssMI | GATC | 6 cut(s) | 115, 450, 632, 853, 949, 961 |
| BssSI | CACGAG | 1 cut(s) | 879 |
| Bst2BI | CACGAG | 1 cut(s) | 879 |
| Bst2UI | CCWGG | 1 cut(s) | 212 |
| Bst4CI | ACNGT | 1 cut(s) | 226 |
| Bst6I | CTCTTC | 1 cut(s) | 697 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 26 |
| BstC8I | GCNNGC | 3 cut(s) | 70, 74, 234 |
| BstDEI | CTNAG | 4 cut(s) | 265, 403, 516, 768 |
| BstDSI | CCRYGG | 1 cut(s) | 636 |
| BstF5I | GGATG | 2 cut(s) | 291, 606 |
| BstFNI | CGCG | 1 cut(s) | 133 |
| BstH2I | RGCGCY | 1 cut(s) | 800 |
| BstHHI | GCGC | 3 cut(s) | 31, 135, 799 |
| BstKTI | GATC | 6 cut(s) | 118, 453, 635, 856, 952, 964 |
| BstMAI | GTCTC | 1 cut(s) | 502 |
| BstMBI | GATC | 6 cut(s) | 115, 450, 632, 853, 949, 961 |
| BstNI | CCWGG | 1 cut(s) | 212 |
| BstSCI | CCNGG | 1 cut(s) | 210 |
| BstSFI | CTRYAG | 2 cut(s) | 18, 55 |
| BstSLI | GKGCMC | 1 cut(s) | 865 |
| BstUI | CGCG | 1 cut(s) | 133 |
| BstV1I | GCAGC | 4 cut(s) | 32, 63, 69, 272 |
| BstV2I | GAAGAC | 1 cut(s) | 482 |
| BstX2I | RGATCY | 1 cut(s) | 632 |
| BstYI | RGATCY | 1 cut(s) | 632 |
| Bsu15I | ATCGAT | 1 cut(s) | 531 |
| BsuRI | GGCC | 1 cut(s) | 678 |
| BsuTUI | ATCGAT | 1 cut(s) | 531 |
| BtgI | CCRYGG | 1 cut(s) | 636 |
| BtgZI | GCGATG | 1 cut(s) | 476 |
| BtrI | CACGTC | 1 cut(s) | 217 |
| BtsCI | GGATG | 2 cut(s) | 291, 606 |
| Cac8I | GCNNGC | 3 cut(s) | 70, 74, 234 |
| CciI | TCATGA | 1 cut(s) | 562 |
| CfoI | GCGC | 3 cut(s) | 31, 135, 799 |
| ClaI | ATCGAT | 1 cut(s) | 531 |
| CseI | GACGC | 2 cut(s) | 74, 794 |
| CviAII | CATG | 3 cut(s) | 239, 563, 599 |
| DdeI | CTNAG | 4 cut(s) | 265, 403, 516, 768 |
| DpnI | GATC | 6 cut(s) | 117, 452, 634, 855, 951, 963 |
| DpnII | GATC | 6 cut(s) | 115, 450, 632, 853, 949, 961 |
| EaeI | YGGCCR | 1 cut(s) | 676 |
| Eam1104I | CTCTTC | 1 cut(s) | 697 |
| EarI | CTCTTC | 1 cut(s) | 697 |
| Ecl136II | GAGCTC | 2 cut(s) | 568, 878 |
| Eco24I | GRGCYC | 2 cut(s) | 570, 880 |
| Eco53kI | GAGCTC | 2 cut(s) | 568, 878 |
| EcoICRI | GAGCTC | 2 cut(s) | 568, 878 |
| EcoRI | GAATTC | 1 cut(s) | 434 |
| EcoRII | CCWGG | 1 cut(s) | 210 |
| EcoT38I | GRGCYC | 2 cut(s) | 570, 880 |
| Esp3I | CGTCTC | 1 cut(s) | 502 |
| FaeI | CATG | 3 cut(s) | 242, 566, 602 |
| FatI | CATG | 3 cut(s) | 238, 562, 598 |
| FbaI | TGATCA | 1 cut(s) | 853 |
| Fnu4HI | GCNGC | 5 cut(s) | 21, 42, 58, 77, 261 |
| FokI | GGATG | 2 cut(s) | 278, 593 |
| FriOI | GRGCYC | 2 cut(s) | 570, 880 |
| Fsp4HI | GCNGC | 5 cut(s) | 21, 42, 58, 77, 261 |
| FspBI | CTAG | 2 cut(s) | 344, 965 |
| FspI | TGCGCA | 1 cut(s) | 30 |
| GlaI | GCGC | 3 cut(s) | 30, 134, 798 |
| GluI | GCNGC | 5 cut(s) | 21, 42, 58, 77, 261 |
| HaeII | RGCGCY | 1 cut(s) | 800 |
| HaeIII | GGCC | 1 cut(s) | 678 |
| HapII | CCGG | 1 cut(s) | 656 |
| HgaI | GACGC | 2 cut(s) | 74, 794 |
| HhaI | GCGC | 3 cut(s) | 31, 135, 799 |
| Hin1II | CATG | 3 cut(s) | 242, 566, 602 |
| Hin6I | GCGC | 3 cut(s) | 29, 133, 797 |
| HinP1I | GCGC | 3 cut(s) | 29, 133, 797 |
| HinfI | GANTC | 7 cut(s) | 301, 326, 407, 478, 528, 549, 659 |
| HpaII | CCGG | 1 cut(s) | 656 |
| HphI | GGTGA | 1 cut(s) | 886 |
| Hpy166II | GTNNAC | 1 cut(s) | 710 |
| Hpy188I | TCNGA | 4 cut(s) | 185, 199, 406, 853 |
| Hpy8I | GTNNAC | 1 cut(s) | 710 |
| HpyCH4III | ACNGT | 1 cut(s) | 226 |
| HpyCH4IV | ACGT | 4 cut(s) | 141, 216, 318, 712 |
| HpyCH4V | TGCA | 6 cut(s) | 20, 57, 113, 417, 503, 542 |
| HpyF3I | CTNAG | 4 cut(s) | 265, 403, 516, 768 |
| HpySE526I | ACGT | 4 cut(s) | 141, 216, 318, 712 |
| Hsp92II | CATG | 3 cut(s) | 242, 566, 602 |
| HspAI | GCGC | 3 cut(s) | 29, 133, 797 |
| Kpn2I | TCCGGA | 1 cut(s) | 655 |
| Ksp22I | TGATCA | 1 cut(s) | 853 |
| Kzo9I | GATC | 6 cut(s) | 115, 450, 632, 853, 949, 961 |
| LmnI | GCTCC | 2 cut(s) | 181, 575 |
| Lsp1109I | GCAGC | 4 cut(s) | 32, 63, 69, 272 |
| MaeI | CTAG | 2 cut(s) | 344, 965 |
| MaeII | ACGT | 4 cut(s) | 141, 216, 318, 712 |
| MaeIII | GTNAC | 3 cut(s) | 152, 535, 892 |
| MalI | GATC | 6 cut(s) | 117, 452, 634, 855, 951, 963 |
| MboI | GATC | 6 cut(s) | 115, 450, 632, 853, 949, 961 |
| MboII | GAAGA | 6 cut(s) | 487, 628, 714, 896, 959, 968 |
| MflI | RGATCY | 1 cut(s) | 632 |
| MhlI | GDGCHC | 3 cut(s) | 570, 865, 880 |
| MlsI | TGGCCA | 1 cut(s) | 678 |
| MluCI | AATT | 5 cut(s) | 164, 434, 625, 664, 888 |
| MluNI | TGGCCA | 1 cut(s) | 678 |
| MlyI | GAGTC | 3 cut(s) | 295, 320, 472 |
| MnlI | CCTC | 7 cut(s) | 262, 374, 698, 718, 722, 748, 810 |
| Mox20I | TGGCCA | 1 cut(s) | 678 |
| MroI | TCCGGA | 1 cut(s) | 655 |
| MscI | TGGCCA | 1 cut(s) | 678 |
| MseI | TTAA | 2 cut(s) | 420, 428 |
| MslI | CAYNNNNRTG | 4 cut(s) | 36, 296, 611, 780 |
| Msp20I | TGGCCA | 1 cut(s) | 678 |
| MspI | CCGG | 1 cut(s) | 656 |
| MspR9I | CCNGG | 1 cut(s) | 212 |
| MvaI | CCWGG | 1 cut(s) | 212 |
| MvnI | CGCG | 1 cut(s) | 133 |
| NdeII | GATC | 6 cut(s) | 115, 450, 632, 853, 949, 961 |
| NlaIII | CATG | 3 cut(s) | 242, 566, 602 |
| NlaIV | GGNNCC | 2 cut(s) | 698, 757 |
| NmuCI | GTSAC | 1 cut(s) | 892 |
| NsbI | TGCGCA | 1 cut(s) | 30 |
| OliI | CACNNNNGTG | 1 cut(s) | 36 |
| PagI | TCATGA | 1 cut(s) | 562 |
| PfeI | GAWTC | 4 cut(s) | 407, 528, 549, 659 |
| PkrI | GCNGC | 5 cut(s) | 22, 43, 59, 78, 262 |
| PleI | GAGTC | 3 cut(s) | 295, 320, 472 |
| PpsI | GAGTC | 3 cut(s) | 295, 320, 472 |
| Psp124BI | GAGCTC | 2 cut(s) | 570, 880 |
| Psp6I | CCWGG | 1 cut(s) | 210 |
| PspGI | CCWGG | 1 cut(s) | 210 |
| PspN4I | GGNNCC | 2 cut(s) | 698, 757 |
| PstI | CTGCAG | 2 cut(s) | 22, 59 |
| PsuI | RGATCY | 1 cut(s) | 632 |
| RseI | CAYNNNNRTG | 4 cut(s) | 36, 296, 611, 780 |
| SacI | GAGCTC | 2 cut(s) | 570, 880 |
| SaqAI | TTAA | 2 cut(s) | 420, 428 |
| SatI | GCNGC | 5 cut(s) | 21, 42, 58, 77, 261 |
| Sau3AI | GATC | 6 cut(s) | 115, 450, 632, 853, 949, 961 |
| SchI | GAGTC | 3 cut(s) | 295, 320, 472 |
| ScrFI | CCNGG | 1 cut(s) | 212 |
| SduI | GDGCHC | 3 cut(s) | 570, 865, 880 |
| SfcI | CTRYAG | 2 cut(s) | 18, 55 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 36, 296, 611, 780 |
| Sse9I | AATT | 5 cut(s) | 164, 434, 625, 664, 888 |
| SsiI | CCGC | 3 cut(s) | 42, 367, 897 |
| SspMI | CTAG | 2 cut(s) | 344, 965 |
| SstI | GAGCTC | 2 cut(s) | 570, 880 |
| StyD4I | CCNGG | 1 cut(s) | 210 |
| TaaI | ACNGT | 1 cut(s) | 226 |
| TaiI | ACGT | 4 cut(s) | 144, 219, 321, 715 |
| TaqI | TCGA | 4 cut(s) | 526, 531, 629, 838 |
| TasI | AATT | 5 cut(s) | 164, 434, 625, 664, 888 |
| TauI | GCSGC | 1 cut(s) | 44 |
| TfiI | GAWTC | 4 cut(s) | 407, 528, 549, 659 |
| Tru1I | TTAA | 2 cut(s) | 420, 428 |
| Tru9I | TTAA | 2 cut(s) | 420, 428 |
| TseFI | GTSAC | 1 cut(s) | 892 |
| TseI | GCWGC | 4 cut(s) | 20, 57, 76, 260 |
| Tsp45I | GTSAC | 1 cut(s) | 892 |
| TspDTI | ATGAA | 2 cut(s) | 551, 596 |
| TspGWI | ACGGA | 2 cut(s) | 625, 709 |
| XapI | RAATTY | 1 cut(s) | 434 |
| XbaI | TCTAGA | 1 cut(s) | 964 |
| XspI | CTAG | 2 cut(s) | 344, 965 |