Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 980 |
| AccII | CGCG | 1 cut(s) | 919 |
| AciI | CCGC | 6 cut(s) | 237, 341, 706, 901, 919, 1122 |
| AclWI | GGATC | 3 cut(s) | 104, 402, 415 |
| AcoI | YGGCCR | 2 cut(s) | 300, 967 |
| AcsI | RAATTY | 3 cut(s) | 22, 39, 773 |
| AcvI | CACGTG | 1 cut(s) | 155 |
| AcyI | GRCGYC | 1 cut(s) | 981 |
| AdeI | CACNNNGTG | 1 cut(s) | 1162 |
| AfaI | GTAC | 1 cut(s) | 288 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 278, 325, 1083 |
| AflII | CTTAAG | 1 cut(s) | 373 |
| AflIII | ACRYGT | 2 cut(s) | 152, 154 |
| AgsI | TTSAA | 6 cut(s) | 128, 221, 251, 607, 721, 1018 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 366 |
| AjiI | CACGTC | 2 cut(s) | 347, 577 |
| AjnI | CCWGG | 2 cut(s) | 437, 546 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 633, 665 |
| AleI | CACNNNNGTG | 1 cut(s) | 105 |
| AluBI | AGCT | 6 cut(s) | 105, 426, 596, 602, 1103, 1154 |
| AluI | AGCT | 6 cut(s) | 105, 426, 596, 602, 1103, 1154 |
| Alw21I | GWGCWC | 1 cut(s) | 1105 |
| Alw26I | GTCTC | 2 cut(s) | 637, 841 |
| AlwI | GGATC | 3 cut(s) | 104, 402, 415 |
| Ama87I | CYCGRG | 1 cut(s) | 560 |
| AoxI | GGCC | 3 cut(s) | 300, 534, 967 |
| ApeKI | GCWGC | 3 cut(s) | 170, 239, 620 |
| ApoI | RAATTY | 3 cut(s) | 22, 39, 773 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 23, 750 |
| AspLEI | GCGC | 1 cut(s) | 983 |
| AspS9I | GGNCC | 1 cut(s) | 360 |
| AsuHPI | GGTGA | 2 cut(s) | 303, 1111 |
| AsuII | TTCGAA | 1 cut(s) | 43 |
| AvaI | CYCGRG | 1 cut(s) | 560 |
| AvaII | GGWCC | 1 cut(s) | 360 |
| BaeGI | GKGCMC | 1 cut(s) | 1090 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 361, 394 |
| BalI | TGGCCA | 1 cut(s) | 969 |
| BamHI | GGATCC | 1 cut(s) | 407 |
| BanI | GGYRCC | 1 cut(s) | 980 |
| BanII | GRGCYC | 1 cut(s) | 1105 |
| BauI | CACGAG | 1 cut(s) | 1104 |
| BbrPI | CACGTG | 1 cut(s) | 155 |
| BbsI | GAAGAC | 1 cut(s) | 821 |
| Bbv12I | GWGCWC | 1 cut(s) | 1105 |
| BbvI | GCAGC | 3 cut(s) | 157, 251, 632 |
| BccI | CCATC | 5 cut(s) | 91, 531, 533, 687, 841 |
| BciT130I | CCWGG | 2 cut(s) | 439, 548 |
| BciVI | GTATCC | 2 cut(s) | 544, 1084 |
| BcoDI | GTCTC | 2 cut(s) | 637, 841 |
| BfaI | CTAG | 4 cut(s) | 227, 567, 683, 1190 |
| BfmI | CTRYAG | 1 cut(s) | 879 |
| BfoI | RGCGCY | 1 cut(s) | 984 |
| BfrI | CTTAAG | 1 cut(s) | 373 |
| BfuI | GTATCC | 2 cut(s) | 544, 1084 |
| BisI | GCNGC | 4 cut(s) | 171, 240, 341, 621 |
| BlsI | GCNGC | 4 cut(s) | 172, 241, 342, 622 |
| Bme1390I | CCNGG | 2 cut(s) | 439, 548 |
| Bme18I | GGWCC | 1 cut(s) | 360 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 366 |
| BmeT110I | CYCGRG | 1 cut(s) | 560 |
| BmgBI | CACGTC | 2 cut(s) | 347, 577 |
| BmgT120I | GGNCC | 1 cut(s) | 360 |
| BmiI | GGNNCC | 5 cut(s) | 361, 362, 409, 923, 982 |
| BmrFI | CCNGG | 2 cut(s) | 439, 548 |
| BmsI | GCATC | 2 cut(s) | 361, 862 |
| BpiI | GAAGAC | 1 cut(s) | 821 |
| BpmI | CTGGAG | 1 cut(s) | 582 |
| Bpu14I | TTCGAA | 1 cut(s) | 43 |
| BpuEI | CTTGAG | 1 cut(s) | 515 |
| BsaAI | YACGTR | 1 cut(s) | 155 |
| BsaHI | GRCGYC | 1 cut(s) | 981 |
| BsaI | GGTCTC | 1 cut(s) | 637 |
| BsaJI | CCNNGG | 1 cut(s) | 437 |
| BsaWI | WCCGGW | 2 cut(s) | 325, 1076 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 278, 325, 1083 |
| Bse118I | RCCGGY | 1 cut(s) | 298 |
| Bse1I | ACTGG | 2 cut(s) | 409, 490 |
| BseBI | CCWGG | 2 cut(s) | 439, 548 |
| BseDI | CCNNGG | 1 cut(s) | 437 |
| BseGI | GGATG | 1 cut(s) | 447 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 278, 325, 1083 |
| BseMII | CTCAG | 1 cut(s) | 504 |
| BseNI | ACTGG | 2 cut(s) | 409, 490 |
| BseSI | GKGCMC | 1 cut(s) | 1090 |
| BseX3I | CGGCCG | 1 cut(s) | 300 |
| BseXI | GCAGC | 3 cut(s) | 157, 251, 632 |
| Bsh1236I | CGCG | 1 cut(s) | 919 |
| Bsh1285I | CGRYCG | 1 cut(s) | 303 |
| BshFI | GGCC | 3 cut(s) | 302, 536, 969 |
| BshNI | GGYRCC | 1 cut(s) | 980 |
| BsiEI | CGRYCG | 1 cut(s) | 303 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1105 |
| BsiHKCI | CYCGRG | 1 cut(s) | 560 |
| BsiSI | CCGG | 4 cut(s) | 299, 303, 326, 1077 |
| BslFI | GGGAC | 1 cut(s) | 373 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 278, 325, 1083 |
| BsmAI | GTCTC | 2 cut(s) | 637, 841 |
| BsmBI | CGTCTC | 1 cut(s) | 841 |
| BsmFI | GGGAC | 1 cut(s) | 373 |
| BsnI | GGCC | 3 cut(s) | 302, 536, 969 |
| Bso31I | GGTCTC | 1 cut(s) | 637 |
| BsoBI | CYCGRG | 1 cut(s) | 560 |
| Bsp119I | TTCGAA | 1 cut(s) | 43 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1090, 1105 |
| Bsp143I | GATC | 6 cut(s) | 109, 176, 407, 789, 1174, 1186 |
| BspACI | CCGC | 6 cut(s) | 237, 341, 706, 901, 919, 1122 |
| BspANI | GGCC | 3 cut(s) | 302, 536, 969 |
| BspCNI | CTCAG | 1 cut(s) | 503 |
| BspFNI | CGCG | 1 cut(s) | 919 |
| BspHI | TCATGA | 1 cut(s) | 1177 |
| BspLI | GGNNCC | 5 cut(s) | 361, 362, 409, 923, 982 |
| BspMAI | CTGCAG | 1 cut(s) | 883 |
| BspPI | GGATC | 3 cut(s) | 104, 402, 415 |
| BspT104I | TTCGAA | 1 cut(s) | 43 |
| BspT107I | GGYRCC | 1 cut(s) | 980 |
| BspTI | CTTAAG | 1 cut(s) | 373 |
| BspTNI | GGTCTC | 1 cut(s) | 637 |
| BsrFI | RCCGGY | 1 cut(s) | 298 |
| BsrI | ACTGG | 2 cut(s) | 409, 490 |
| BssAI | RCCGGY | 1 cut(s) | 298 |
| BssECI | CCNNGG | 1 cut(s) | 437 |
| BssMI | GATC | 6 cut(s) | 109, 176, 407, 789, 1174, 1186 |
| BssNI | GRCGYC | 1 cut(s) | 981 |
| BssSI | CACGAG | 1 cut(s) | 1104 |
| Bst2BI | CACGAG | 1 cut(s) | 1104 |
| Bst2UI | CCWGG | 2 cut(s) | 439, 548 |
| Bst4CI | ACNGT | 2 cut(s) | 335, 368 |
| Bst6I | CTCTTC | 1 cut(s) | 922 |
| BstACI | GRCGYC | 1 cut(s) | 981 |
| BstAFI | CTTAAG | 1 cut(s) | 373 |
| BstBAI | YACGTR | 1 cut(s) | 155 |
| BstBI | TTCGAA | 1 cut(s) | 43 |
| BstC8I | GCNNGC | 1 cut(s) | 594 |
| BstDEI | CTNAG | 5 cut(s) | 490, 625, 855, 993, 1041 |
| BstEII | GGTNACC | 1 cut(s) | 896 |
| BstF5I | GGATG | 1 cut(s) | 447 |
| BstFNI | CGCG | 1 cut(s) | 919 |
| BstH2I | RGCGCY | 1 cut(s) | 984 |
| BstHHI | GCGC | 1 cut(s) | 983 |
| BstKTI | GATC | 6 cut(s) | 112, 179, 410, 792, 1177, 1189 |
| BstMAI | GTCTC | 2 cut(s) | 637, 841 |
| BstMBI | GATC | 6 cut(s) | 109, 176, 407, 789, 1174, 1186 |
| BstMCI | CGRYCG | 1 cut(s) | 303 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 236, 349, 423, 432, 608, 617, 1130, 1151 |
| BstNI | CCWGG | 2 cut(s) | 439, 548 |
| BstPI | GGTNACC | 1 cut(s) | 896 |
| BstSCI | CCNGG | 2 cut(s) | 437, 546 |
| BstSFI | CTRYAG | 1 cut(s) | 879 |
| BstSLI | GKGCMC | 1 cut(s) | 1090 |
| BstUI | CGCG | 1 cut(s) | 919 |
| BstV1I | GCAGC | 3 cut(s) | 157, 251, 632 |
| BstV2I | GAAGAC | 1 cut(s) | 821 |
| BstX2I | RGATCY | 1 cut(s) | 407 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 977 |
| BstYI | RGATCY | 1 cut(s) | 407 |
| BstZI | CGGCCG | 1 cut(s) | 300 |
| BsuI | GTATCC | 2 cut(s) | 544, 1084 |
| BsuRI | GGCC | 3 cut(s) | 302, 536, 969 |
| BtgZI | GCGATG | 1 cut(s) | 815 |
| BtrI | CACGTC | 2 cut(s) | 347, 577 |
| BtsCI | GGATG | 1 cut(s) | 447 |
| BtsI | GCAGTG | 1 cut(s) | 412 |
| BtsIMutI | CAGTG | 3 cut(s) | 364, 402, 412 |
| Cac8I | GCNNGC | 1 cut(s) | 594 |
| CciI | TCATGA | 1 cut(s) | 1177 |
| CfoI | GCGC | 1 cut(s) | 983 |
| Cfr10I | RCCGGY | 1 cut(s) | 298 |
| Cfr13I | GGNCC | 1 cut(s) | 360 |
| CseI | GACGC | 3 cut(s) | 71, 109, 1019 |
| Csp6I | GTAC | 1 cut(s) | 287 |
| CviAII | CATG | 5 cut(s) | 419, 451, 938, 971, 1178 |
| CviQI | GTAC | 1 cut(s) | 287 |
| DdeI | CTNAG | 5 cut(s) | 490, 625, 855, 993, 1041 |
| DinI | GGCGCC | 1 cut(s) | 982 |
| DpnI | GATC | 6 cut(s) | 111, 178, 409, 791, 1176, 1188 |
| DpnII | GATC | 6 cut(s) | 109, 176, 407, 789, 1174, 1186 |
| DraI | TTTAAA | 1 cut(s) | 73 |
| DraIII | CACNNNGTG | 1 cut(s) | 1162 |
| DriI | GACNNNNNGTC | 1 cut(s) | 366 |
| EaeI | YGGCCR | 2 cut(s) | 300, 967 |
| EagI | CGGCCG | 1 cut(s) | 300 |
| Eam1104I | CTCTTC | 1 cut(s) | 922 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 366 |
| EarI | CTCTTC | 1 cut(s) | 922 |
| Ecl136II | GAGCTC | 1 cut(s) | 1103 |
| EclXI | CGGCCG | 1 cut(s) | 300 |
| Eco24I | GRGCYC | 1 cut(s) | 1105 |
| Eco31I | GGTCTC | 1 cut(s) | 637 |
| Eco32I | GATATC | 1 cut(s) | 517 |
| Eco47I | GGWCC | 1 cut(s) | 360 |
| Eco52I | CGGCCG | 1 cut(s) | 300 |
| Eco53kI | GAGCTC | 1 cut(s) | 1103 |
| Eco72I | CACGTG | 1 cut(s) | 155 |
| Eco88I | CYCGRG | 1 cut(s) | 560 |
| Eco91I | GGTNACC | 1 cut(s) | 896 |
| EcoICRI | GAGCTC | 1 cut(s) | 1103 |
| EcoO109I | RGGNCCY | 1 cut(s) | 360 |
| EcoO65I | GGTNACC | 1 cut(s) | 896 |
| EcoRI | GAATTC | 1 cut(s) | 773 |
| EcoRII | CCWGG | 2 cut(s) | 437, 546 |
| EcoRV | GATATC | 1 cut(s) | 517 |
| EcoT38I | GRGCYC | 1 cut(s) | 1105 |
| EgeI | GGCGCC | 1 cut(s) | 982 |
| EheI | GGCGCC | 1 cut(s) | 982 |
| Esp3I | CGTCTC | 1 cut(s) | 841 |
| FaeI | CATG | 5 cut(s) | 422, 454, 941, 974, 1181 |
| FaqI | GGGAC | 1 cut(s) | 373 |
| FatI | CATG | 5 cut(s) | 418, 450, 937, 970, 1177 |
| FauNDI | CATATG | 2 cut(s) | 205, 796 |
| Fnu4HI | GCNGC | 4 cut(s) | 171, 240, 341, 621 |
| FokI | GGATG | 1 cut(s) | 454 |
| FriOI | GRGCYC | 1 cut(s) | 1105 |
| Fsp4HI | GCNGC | 4 cut(s) | 171, 240, 341, 621 |
| FspBI | CTAG | 4 cut(s) | 227, 567, 683, 1190 |
| GlaI | GCGC | 1 cut(s) | 982 |
| GluI | GCNGC | 4 cut(s) | 171, 240, 341, 621 |
| GsuI | CTGGAG | 1 cut(s) | 582 |
| HaeII | RGCGCY | 1 cut(s) | 984 |
| HaeIII | GGCC | 3 cut(s) | 302, 536, 969 |
| HapII | CCGG | 4 cut(s) | 299, 303, 326, 1077 |
| HgaI | GACGC | 3 cut(s) | 71, 109, 1019 |
| HhaI | GCGC | 1 cut(s) | 983 |
| Hin1I | GRCGYC | 1 cut(s) | 981 |
| Hin1II | CATG | 5 cut(s) | 422, 454, 941, 974, 1181 |
| Hin6I | GCGC | 1 cut(s) | 981 |
| HinP1I | GCGC | 1 cut(s) | 981 |
| HincII | GTYRAC | 1 cut(s) | 935 |
| HindII | GTYRAC | 1 cut(s) | 935 |
| HinfI | GANTC | 8 cut(s) | 268, 384, 543, 556, 665, 817, 997, 1037 |
| HpaII | CCGG | 4 cut(s) | 299, 303, 326, 1077 |
| HphI | GGTGA | 2 cut(s) | 303, 1111 |
| Hpy166II | GTNNAC | 1 cut(s) | 935 |
| Hpy188I | TCNGA | 5 cut(s) | 114, 191, 383, 493, 745 |
| Hpy188III | TCNNGA | 9 cut(s) | 87, 272, 512, 560, 677, 731, 1106, 1178, 1190 |
| Hpy8I | GTNNAC | 1 cut(s) | 935 |
| Hpy99I | CGWCG | 1 cut(s) | 65 |
| HpyAV | CCTTC | 2 cut(s) | 227, 838 |
| HpyCH4III | ACNGT | 2 cut(s) | 335, 368 |
| HpyCH4IV | ACGT | 4 cut(s) | 154, 346, 576, 657 |
| HpyCH4V | TGCA | 3 cut(s) | 173, 842, 881 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 236, 349, 423, 432, 608, 617, 1130, 1151 |
| HpyF3I | CTNAG | 5 cut(s) | 490, 625, 855, 993, 1041 |
| HpySE526I | ACGT | 4 cut(s) | 154, 346, 576, 657 |
| Hsp92I | GRCGYC | 1 cut(s) | 981 |
| Hsp92II | CATG | 5 cut(s) | 422, 454, 941, 974, 1181 |
| HspAI | GCGC | 1 cut(s) | 981 |
| KasI | GGCGCC | 1 cut(s) | 980 |
| KflI | GGGWCCC | 1 cut(s) | 360 |
| Kzo9I | GATC | 6 cut(s) | 109, 176, 407, 789, 1174, 1186 |
| LmnI | GCTCC | 2 cut(s) | 475, 601 |
| Lsp1109I | GCAGC | 3 cut(s) | 157, 251, 632 |
| LweI | GCATC | 2 cut(s) | 361, 862 |
| MaeI | CTAG | 4 cut(s) | 227, 567, 683, 1190 |
| MaeII | ACGT | 4 cut(s) | 154, 346, 576, 657 |
| MaeIII | GTNAC | 4 cut(s) | 368, 662, 896, 1117 |
| MalI | GATC | 6 cut(s) | 111, 178, 409, 791, 1176, 1188 |
| MboI | GATC | 6 cut(s) | 109, 176, 407, 789, 1174, 1186 |
| MboII | GAAGA | 7 cut(s) | 31, 653, 826, 939, 1121, 1184, 1193 |
| MflI | RGATCY | 1 cut(s) | 407 |
| MhlI | GDGCHC | 2 cut(s) | 1090, 1105 |
| MlsI | TGGCCA | 1 cut(s) | 969 |
| MluCI | AATT | 6 cut(s) | 22, 39, 458, 773, 867, 1113 |
| MluNI | TGGCCA | 1 cut(s) | 969 |
| Mly113I | GGCGCC | 1 cut(s) | 981 |
| MlyI | GAGTC | 5 cut(s) | 378, 659, 811, 1006, 1046 |
| MmeI | TCCRAC | 1 cut(s) | 169 |
| MnlI | CCTC | 8 cut(s) | 136, 266, 622, 713, 923, 947, 973, 1035 |
| Mox20I | TGGCCA | 1 cut(s) | 969 |
| MroXI | GAANNNNTTC | 2 cut(s) | 23, 750 |
| MscI | TGGCCA | 1 cut(s) | 969 |
| MseI | TTAA | 5 cut(s) | 72, 200, 374, 759, 767 |
| MslI | CAYNNNNRTG | 5 cut(s) | 105, 417, 975, 1005, 1182 |
| Msp20I | TGGCCA | 1 cut(s) | 969 |
| MspA1I | CMGCKG | 1 cut(s) | 105 |
| MspCI | CTTAAG | 1 cut(s) | 373 |
| MspI | CCGG | 4 cut(s) | 299, 303, 326, 1077 |
| MspR9I | CCNGG | 2 cut(s) | 439, 548 |
| MvaI | CCWGG | 2 cut(s) | 439, 548 |
| MvnI | CGCG | 1 cut(s) | 919 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 236, 349, 423, 432, 608, 617, 1130, 1151 |
| NarI | GGCGCC | 1 cut(s) | 981 |
| NdeI | CATATG | 2 cut(s) | 205, 796 |
| NdeII | GATC | 6 cut(s) | 109, 176, 407, 789, 1174, 1186 |
| NlaIII | CATG | 5 cut(s) | 422, 454, 941, 974, 1181 |
| NlaIV | GGNNCC | 5 cut(s) | 361, 362, 409, 923, 982 |
| NmuCI | GTSAC | 3 cut(s) | 368, 662, 1117 |
| NspV | TTCGAA | 1 cut(s) | 43 |
| OliI | CACNNNNGTG | 1 cut(s) | 105 |
| PaeR7I | CTCGAG | 1 cut(s) | 560 |
| PagI | TCATGA | 1 cut(s) | 1177 |
| PdmI | GAANNNNTTC | 2 cut(s) | 23, 750 |
| PfeI | GAWTC | 3 cut(s) | 268, 543, 556 |
| PfoI | TCCNGGA | 1 cut(s) | 546 |
| PkrI | GCNGC | 4 cut(s) | 172, 241, 342, 622 |
| PleI | GAGTC | 5 cut(s) | 378, 659, 811, 1005, 1045 |
| PluTI | GGCGCC | 1 cut(s) | 984 |
| PmaCI | CACGTG | 1 cut(s) | 155 |
| PmlI | CACGTG | 1 cut(s) | 155 |
| PpsI | GAGTC | 5 cut(s) | 378, 659, 811, 1005, 1045 |
| Ppu21I | YACGTR | 1 cut(s) | 155 |
| PpuMI | RGGWCCY | 1 cut(s) | 360 |
| Psp124BI | GAGCTC | 1 cut(s) | 1105 |
| Psp5II | RGGWCCY | 1 cut(s) | 360 |
| Psp6I | CCWGG | 2 cut(s) | 437, 546 |
| PspCI | CACGTG | 1 cut(s) | 155 |
| PspEI | GGTNACC | 1 cut(s) | 896 |
| PspGI | CCWGG | 2 cut(s) | 437, 546 |
| PspN4I | GGNNCC | 5 cut(s) | 361, 362, 409, 923, 982 |
| PspPI | GGNCC | 1 cut(s) | 360 |
| PspPPI | RGGWCCY | 1 cut(s) | 360 |
| PstI | CTGCAG | 1 cut(s) | 883 |
| PsuI | RGATCY | 1 cut(s) | 407 |
| PvuII | CAGCTG | 1 cut(s) | 105 |
| RsaI | GTAC | 1 cut(s) | 288 |
| RsaNI | GTAC | 1 cut(s) | 287 |
| RseI | CAYNNNNRTG | 5 cut(s) | 105, 417, 975, 1005, 1182 |
| SacI | GAGCTC | 1 cut(s) | 1105 |
| SaqAI | TTAA | 5 cut(s) | 72, 200, 374, 759, 767 |
| SatI | GCNGC | 4 cut(s) | 171, 240, 341, 621 |
| Sau3AI | GATC | 6 cut(s) | 109, 176, 407, 789, 1174, 1186 |
| Sau96I | GGNCC | 1 cut(s) | 360 |
| SchI | GAGTC | 5 cut(s) | 378, 659, 811, 1006, 1046 |
| ScrFI | CCNGG | 2 cut(s) | 439, 548 |
| SduI | GDGCHC | 2 cut(s) | 1090, 1105 |
| SfaNI | GCATC | 2 cut(s) | 361, 862 |
| SfcI | CTRYAG | 1 cut(s) | 879 |
| SfoI | GGCGCC | 1 cut(s) | 982 |
| Sfr274I | CTCGAG | 1 cut(s) | 560 |
| SfuI | TTCGAA | 1 cut(s) | 43 |
| SinI | GGWCC | 1 cut(s) | 360 |
| SlaI | CTCGAG | 1 cut(s) | 560 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 105, 417, 975, 1005, 1182 |
| SmlI | CTYRAG | 3 cut(s) | 373, 530, 560 |
| SmoI | CTYRAG | 3 cut(s) | 373, 530, 560 |
| Sse9I | AATT | 6 cut(s) | 22, 39, 458, 773, 867, 1113 |
| SsiI | CCGC | 6 cut(s) | 237, 341, 706, 901, 919, 1122 |
| SspDI | GGCGCC | 1 cut(s) | 980 |
| SspMI | CTAG | 4 cut(s) | 227, 567, 683, 1190 |
| SstI | GAGCTC | 1 cut(s) | 1105 |
| StyD4I | CCNGG | 2 cut(s) | 437, 546 |
| TaaI | ACNGT | 2 cut(s) | 335, 368 |
| TaiI | ACGT | 4 cut(s) | 157, 349, 579, 660 |
| TaqI | TCGA | 5 cut(s) | 43, 60, 561, 639, 865 |
| TasI | AATT | 6 cut(s) | 22, 39, 458, 773, 867, 1113 |
| TauI | GCSGC | 1 cut(s) | 343 |
| TfiI | GAWTC | 3 cut(s) | 268, 543, 556 |
| Tru1I | TTAA | 5 cut(s) | 72, 200, 374, 759, 767 |
| Tru9I | TTAA | 5 cut(s) | 72, 200, 374, 759, 767 |
| TscAI | CASTG | 3 cut(s) | 371, 409, 419 |
| TseFI | GTSAC | 3 cut(s) | 368, 662, 1117 |
| TseI | GCWGC | 3 cut(s) | 170, 239, 620 |
| Tsp45I | GTSAC | 3 cut(s) | 368, 662, 1117 |
| TspDTI | ATGAA | 3 cut(s) | 17, 467, 1194 |
| TspGWI | ACGGA | 1 cut(s) | 650 |
| TspRI | CASTG | 3 cut(s) | 371, 409, 419 |
| Vha464I | CTTAAG | 1 cut(s) | 373 |
| VpaK11BI | GGWCC | 1 cut(s) | 360 |
| XapI | RAATTY | 3 cut(s) | 22, 39, 773 |
| XbaI | TCTAGA | 1 cut(s) | 1189 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 401 |
| XhoI | CTCGAG | 1 cut(s) | 560 |
| XmnI | GAANNNNTTC | 2 cut(s) | 23, 750 |
| XspI | CTAG | 4 cut(s) | 227, 567, 683, 1190 |