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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 136 |
| AccII | CGCG | 1 cut(s) | 699 |
| AccIII | TCCGGA | 1 cut(s) | 679 |
| AciI | CCGC | 1 cut(s) | 391 |
| AclWI | GGATC | 1 cut(s) | 651 |
| AcsI | RAATTY | 1 cut(s) | 458 |
| AfaI | GTAC | 1 cut(s) | 278 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 136 |
| AgsI | TTSAA | 2 cut(s) | 326, 406 |
| AjiI | CACGTC | 1 cut(s) | 166 |
| AjnI | CCWGG | 2 cut(s) | 129, 159 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 318, 350 |
| AluBI | AGCT | 4 cut(s) | 154, 185, 592, 602 |
| AluI | AGCT | 4 cut(s) | 154, 185, 592, 602 |
| Alw21I | GWGCWC | 1 cut(s) | 594 |
| Alw26I | GTCTC | 3 cut(s) | 322, 526, 562 |
| AlwI | GGATC | 1 cut(s) | 651 |
| Ama87I | CYCGRG | 2 cut(s) | 119, 149 |
| Aor13HI | TCCGGA | 1 cut(s) | 679 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 209 |
| ApoI | RAATTY | 1 cut(s) | 458 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 435 |
| AspLEI | GCGC | 1 cut(s) | 701 |
| AsuHPI | GGTGA | 1 cut(s) | 241 |
| AvaI | CYCGRG | 2 cut(s) | 119, 149 |
| BanII | GRGCYC | 1 cut(s) | 594 |
| BbsI | GAAGAC | 2 cut(s) | 303, 506 |
| Bbv12I | GWGCWC | 1 cut(s) | 594 |
| BbvI | GCAGC | 1 cut(s) | 221 |
| BccI | CCATC | 4 cut(s) | 92, 245, 372, 526 |
| BciT130I | CCWGG | 2 cut(s) | 131, 161 |
| BciVI | GTATCC | 2 cut(s) | 103, 133 |
| BcoDI | GTCTC | 3 cut(s) | 322, 526, 562 |
| BfaI | CTAG | 2 cut(s) | 126, 368 |
| BfuI | GTATCC | 2 cut(s) | 103, 133 |
| BisI | GCNGC | 1 cut(s) | 210 |
| BlpI | GCTNAGC | 1 cut(s) | 155 |
| BlsI | GCNGC | 1 cut(s) | 211 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 161 |
| BmeT110I | CYCGRG | 2 cut(s) | 119, 149 |
| BmgBI | CACGTC | 1 cut(s) | 166 |
| BmrFI | CCNGG | 2 cut(s) | 131, 161 |
| BmrI | ACTGGG | 1 cut(s) | 512 |
| BmsI | GCATC | 2 cut(s) | 94, 208 |
| BmuI | ACTGGG | 1 cut(s) | 512 |
| BpiI | GAAGAC | 2 cut(s) | 303, 506 |
| BpmI | CTGGAG | 1 cut(s) | 257 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 155 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 171 |
| BsaI | GGTCTC | 1 cut(s) | 322 |
| BsaJI | CCNNGG | 1 cut(s) | 660 |
| BsaWI | WCCGGW | 1 cut(s) | 679 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 136 |
| Bse1I | ACTGG | 3 cut(s) | 49, 274, 518 |
| BseAI | TCCGGA | 1 cut(s) | 679 |
| BseBI | CCWGG | 2 cut(s) | 131, 161 |
| BseDI | CCNNGG | 1 cut(s) | 660 |
| BseGI | GGATG | 4 cut(s) | 240, 268, 315, 630 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 136 |
| BseNI | ACTGG | 3 cut(s) | 49, 274, 518 |
| BseXI | GCAGC | 1 cut(s) | 221 |
| Bsh1236I | CGCG | 1 cut(s) | 699 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKAI | GWGCWC | 1 cut(s) | 594 |
| BsiHKCI | CYCGRG | 2 cut(s) | 119, 149 |
| BsiSI | CCGG | 1 cut(s) | 680 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 136 |
| BsmAI | GTCTC | 3 cut(s) | 322, 526, 562 |
| BsmBI | CGTCTC | 1 cut(s) | 562 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 322 |
| BsoBI | CYCGRG | 2 cut(s) | 119, 149 |
| Bsp1286I | GDGCHC | 1 cut(s) | 594 |
| Bsp13I | TCCGGA | 1 cut(s) | 679 |
| Bsp143I | GATC | 2 cut(s) | 474, 656 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 155 |
| BspACI | CCGC | 1 cut(s) | 391 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspEI | TCCGGA | 1 cut(s) | 679 |
| BspFNI | CGCG | 1 cut(s) | 699 |
| BspHI | TCATGA | 1 cut(s) | 586 |
| BspPI | GGATC | 1 cut(s) | 651 |
| BspTNI | GGTCTC | 1 cut(s) | 322 |
| BsrI | ACTGG | 3 cut(s) | 49, 274, 518 |
| BssECI | CCNNGG | 1 cut(s) | 660 |
| BssMI | GATC | 2 cut(s) | 474, 656 |
| Bst2UI | CCWGG | 2 cut(s) | 131, 161 |
| Bst4CI | ACNGT | 2 cut(s) | 175, 565 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 183 |
| BstDEI | CTNAG | 4 cut(s) | 155, 214, 540, 705 |
| BstDSI | CCRYGG | 1 cut(s) | 660 |
| BstF5I | GGATG | 4 cut(s) | 240, 268, 315, 630 |
| BstFNI | CGCG | 1 cut(s) | 699 |
| BstHHI | GCGC | 1 cut(s) | 701 |
| BstKTI | GATC | 2 cut(s) | 477, 659 |
| BstMAI | GTCTC | 3 cut(s) | 322, 526, 562 |
| BstMBI | GATC | 2 cut(s) | 474, 656 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 206, 218 |
| BstNI | CCWGG | 2 cut(s) | 131, 161 |
| BstSCI | CCNGG | 2 cut(s) | 129, 159 |
| BstUI | CGCG | 1 cut(s) | 699 |
| BstV1I | GCAGC | 1 cut(s) | 221 |
| BstV2I | GAAGAC | 2 cut(s) | 303, 506 |
| BstX2I | RGATCY | 1 cut(s) | 656 |
| BstYI | RGATCY | 1 cut(s) | 656 |
| BsuI | GTATCC | 2 cut(s) | 103, 133 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgI | CCRYGG | 1 cut(s) | 660 |
| BtgZI | GCGATG | 1 cut(s) | 500 |
| BtrI | CACGTC | 1 cut(s) | 166 |
| BtsCI | GGATG | 4 cut(s) | 240, 268, 315, 630 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 183 |
| CciI | TCATGA | 1 cut(s) | 586 |
| CfoI | GCGC | 1 cut(s) | 701 |
| Csp6I | GTAC | 1 cut(s) | 277 |
| CviAII | CATG | 3 cut(s) | 587, 623, 669 |
| CviQI | GTAC | 1 cut(s) | 277 |
| DdeI | CTNAG | 4 cut(s) | 155, 214, 540, 705 |
| DpnI | GATC | 2 cut(s) | 476, 658 |
| DpnII | GATC | 2 cut(s) | 474, 656 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Ecl136II | GAGCTC | 1 cut(s) | 592 |
| Eco24I | GRGCYC | 1 cut(s) | 594 |
| Eco31I | GGTCTC | 1 cut(s) | 322 |
| Eco53kI | GAGCTC | 1 cut(s) | 592 |
| Eco88I | CYCGRG | 2 cut(s) | 119, 149 |
| EcoICRI | GAGCTC | 1 cut(s) | 592 |
| EcoRI | GAATTC | 1 cut(s) | 458 |
| EcoRII | CCWGG | 2 cut(s) | 129, 159 |
| EcoT38I | GRGCYC | 1 cut(s) | 594 |
| Esp3I | CGTCTC | 1 cut(s) | 562 |
| FaeI | CATG | 3 cut(s) | 590, 626, 672 |
| FatI | CATG | 3 cut(s) | 586, 622, 668 |
| FauNDI | CATATG | 1 cut(s) | 258 |
| Fnu4HI | GCNGC | 1 cut(s) | 210 |
| FokI | GGATG | 4 cut(s) | 227, 275, 322, 617 |
| FriOI | GRGCYC | 1 cut(s) | 594 |
| Fsp4HI | GCNGC | 1 cut(s) | 210 |
| FspBI | CTAG | 2 cut(s) | 126, 368 |
| GlaI | GCGC | 1 cut(s) | 700 |
| GluI | GCNGC | 1 cut(s) | 210 |
| GsuI | CTGGAG | 1 cut(s) | 257 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HapII | CCGG | 1 cut(s) | 680 |
| HhaI | GCGC | 1 cut(s) | 701 |
| Hin1II | CATG | 3 cut(s) | 590, 626, 672 |
| Hin6I | GCGC | 1 cut(s) | 699 |
| HinP1I | GCGC | 1 cut(s) | 699 |
| HinfI | GANTC | 9 cut(s) | 102, 115, 145, 266, 350, 502, 552, 573, 683 |
| HpaII | CCGG | 1 cut(s) | 680 |
| HphI | GGTGA | 1 cut(s) | 241 |
| Hpy188I | TCNGA | 1 cut(s) | 52 |
| Hpy188III | TCNNGA | 7 cut(s) | 119, 149, 362, 416, 587, 654, 680 |
| HpyAV | CCTTC | 1 cut(s) | 300 |
| HpyCH4III | ACNGT | 2 cut(s) | 175, 565 |
| HpyCH4IV | ACGT | 2 cut(s) | 165, 342 |
| HpyCH4V | TGCA | 1 cut(s) | 221 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 206, 218 |
| HpyF3I | CTNAG | 4 cut(s) | 155, 214, 540, 705 |
| HpySE526I | ACGT | 2 cut(s) | 165, 342 |
| Hsp92II | CATG | 3 cut(s) | 590, 626, 672 |
| HspAI | GCGC | 1 cut(s) | 699 |
| Kpn2I | TCCGGA | 1 cut(s) | 679 |
| Kzo9I | GATC | 2 cut(s) | 474, 656 |
| LmnI | GCTCC | 3 cut(s) | 34, 276, 599 |
| Lsp1109I | GCAGC | 1 cut(s) | 221 |
| LweI | GCATC | 2 cut(s) | 94, 208 |
| MaeI | CTAG | 2 cut(s) | 126, 368 |
| MaeII | ACGT | 2 cut(s) | 165, 342 |
| MaeIII | GTNAC | 3 cut(s) | 5, 347, 559 |
| MalI | GATC | 2 cut(s) | 476, 658 |
| MboI | GATC | 2 cut(s) | 474, 656 |
| MboII | GAAGA | 6 cut(s) | 305, 308, 338, 511, 516, 652 |
| MflI | RGATCY | 1 cut(s) | 656 |
| MhlI | GDGCHC | 1 cut(s) | 594 |
| MluCI | AATT | 4 cut(s) | 17, 458, 649, 688 |
| MlyI | GAGTC | 2 cut(s) | 344, 496 |
| MnlI | CCTC | 1 cut(s) | 398 |
| MroI | TCCGGA | 1 cut(s) | 679 |
| MroXI | GAANNNNTTC | 1 cut(s) | 435 |
| MseI | TTAA | 2 cut(s) | 444, 452 |
| MslI | CAYNNNNRTG | 3 cut(s) | 245, 261, 635 |
| MspI | CCGG | 1 cut(s) | 680 |
| MspR9I | CCNGG | 2 cut(s) | 131, 161 |
| MvaI | CCWGG | 2 cut(s) | 131, 161 |
| MvnI | CGCG | 1 cut(s) | 699 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 206, 218 |
| NdeI | CATATG | 1 cut(s) | 258 |
| NdeII | GATC | 2 cut(s) | 474, 656 |
| NlaIII | CATG | 3 cut(s) | 590, 626, 672 |
| NmuCI | GTSAC | 2 cut(s) | 5, 347 |
| PaeR7I | CTCGAG | 2 cut(s) | 119, 149 |
| PagI | TCATGA | 1 cut(s) | 586 |
| PdmI | GAANNNNTTC | 1 cut(s) | 435 |
| PfeI | GAWTC | 7 cut(s) | 102, 115, 145, 266, 552, 573, 683 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 136 |
| PkrI | GCNGC | 1 cut(s) | 211 |
| PleI | GAGTC | 2 cut(s) | 344, 496 |
| PpsI | GAGTC | 2 cut(s) | 344, 496 |
| Psp124BI | GAGCTC | 1 cut(s) | 594 |
| Psp6I | CCWGG | 2 cut(s) | 129, 159 |
| PspGI | CCWGG | 2 cut(s) | 129, 159 |
| PsuI | RGATCY | 1 cut(s) | 656 |
| RsaI | GTAC | 1 cut(s) | 278 |
| RsaNI | GTAC | 1 cut(s) | 277 |
| RseI | CAYNNNNRTG | 3 cut(s) | 245, 261, 635 |
| SacI | GAGCTC | 1 cut(s) | 594 |
| SaqAI | TTAA | 2 cut(s) | 444, 452 |
| SatI | GCNGC | 1 cut(s) | 210 |
| Sau3AI | GATC | 2 cut(s) | 474, 656 |
| SchI | GAGTC | 2 cut(s) | 344, 496 |
| ScrFI | CCNGG | 2 cut(s) | 131, 161 |
| SduI | GDGCHC | 1 cut(s) | 594 |
| SfaNI | GCATC | 2 cut(s) | 94, 208 |
| Sfr274I | CTCGAG | 2 cut(s) | 119, 149 |
| SlaI | CTCGAG | 2 cut(s) | 119, 149 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 245, 261, 635 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 149, 186 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 149, 186 |
| Sse9I | AATT | 4 cut(s) | 17, 458, 649, 688 |
| SsiI | CCGC | 1 cut(s) | 391 |
| SspMI | CTAG | 2 cut(s) | 126, 368 |
| SstI | GAGCTC | 1 cut(s) | 594 |
| StyD4I | CCNGG | 2 cut(s) | 129, 159 |
| TaaI | ACNGT | 2 cut(s) | 175, 565 |
| TaiI | ACGT | 2 cut(s) | 168, 345 |
| TaqI | TCGA | 4 cut(s) | 120, 150, 550, 653 |
| TasI | AATT | 4 cut(s) | 17, 458, 649, 688 |
| TfiI | GAWTC | 7 cut(s) | 102, 115, 145, 266, 552, 573, 683 |
| Tru1I | TTAA | 2 cut(s) | 444, 452 |
| Tru9I | TTAA | 2 cut(s) | 444, 452 |
| TseFI | GTSAC | 2 cut(s) | 5, 347 |
| TseI | GCWGC | 1 cut(s) | 209 |
| Tsp45I | GTSAC | 2 cut(s) | 5, 347 |
| TspDTI | ATGAA | 5 cut(s) | 302, 306, 516, 575, 620 |
| TspGWI | ACGGA | 2 cut(s) | 335, 649 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 136 |
| XapI | RAATTY | 1 cut(s) | 458 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 244 |
| XhoI | CTCGAG | 2 cut(s) | 119, 149 |
| XmnI | GAANNNNTTC | 1 cut(s) | 435 |
| XspI | CTAG | 2 cut(s) | 126, 368 |