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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 837 |
| AciI | CCGC | 3 cut(s) | 11, 75, 529 |
| AclI | AACGTT | 1 cut(s) | 480 |
| AclWI | GGATC | 1 cut(s) | 789 |
| AcoI | YGGCCR | 2 cut(s) | 92, 126 |
| AcsI | RAATTY | 3 cut(s) | 144, 596, 821 |
| AgsI | TTSAA | 2 cut(s) | 792, 826 |
| AhlI | ACTAGT | 1 cut(s) | 389 |
| AjiI | CACGTC | 2 cut(s) | 39, 304 |
| AjnI | CCWGG | 1 cut(s) | 297 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 456, 488 |
| AleI | CACNNNNGTG | 1 cut(s) | 620 |
| AluBI | AGCT | 4 cut(s) | 323, 329, 730, 740 |
| AluI | AGCT | 4 cut(s) | 323, 329, 730, 740 |
| Alw21I | GWGCWC | 1 cut(s) | 732 |
| Alw26I | GTCTC | 2 cut(s) | 460, 664 |
| AlwI | GGATC | 1 cut(s) | 789 |
| Ama87I | CYCGRG | 1 cut(s) | 287 |
| AoxI | GGCC | 2 cut(s) | 92, 126 |
| ApeKI | GCWGC | 4 cut(s) | 8, 32, 58, 347 |
| ApoI | RAATTY | 3 cut(s) | 144, 596, 821 |
| AspLEI | GCGC | 2 cut(s) | 839, 855 |
| AspS9I | GGNCC | 1 cut(s) | 13 |
| AvaI | CYCGRG | 1 cut(s) | 287 |
| AvaII | GGWCC | 1 cut(s) | 13 |
| BanII | GRGCYC | 1 cut(s) | 732 |
| BbsI | GAAGAC | 2 cut(s) | 441, 644 |
| Bbv12I | GWGCWC | 1 cut(s) | 732 |
| BbvI | GCAGC | 4 cut(s) | 20, 44, 70, 359 |
| BccI | CCATC | 3 cut(s) | 260, 510, 664 |
| BciT130I | CCWGG | 1 cut(s) | 299 |
| BcoDI | GTCTC | 2 cut(s) | 460, 664 |
| BcuI | ACTAGT | 1 cut(s) | 389 |
| BfaI | CTAG | 3 cut(s) | 294, 390, 506 |
| BfmI | CTRYAG | 1 cut(s) | 702 |
| BfoI | RGCGCY | 1 cut(s) | 856 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 356 |
| BisI | GCNGC | 4 cut(s) | 9, 33, 59, 348 |
| BlsI | GCNGC | 4 cut(s) | 10, 34, 60, 349 |
| Bme1390I | CCNGG | 1 cut(s) | 299 |
| Bme18I | GGWCC | 1 cut(s) | 13 |
| BmeT110I | CYCGRG | 1 cut(s) | 287 |
| BmgBI | CACGTC | 2 cut(s) | 39, 304 |
| BmgT120I | GGNCC | 1 cut(s) | 13 |
| BmiI | GGNNCC | 1 cut(s) | 15 |
| BmrFI | CCNGG | 1 cut(s) | 299 |
| BmsI | GCATC | 1 cut(s) | 70 |
| BpiI | GAAGAC | 2 cut(s) | 441, 644 |
| BpmI | CTGGAG | 1 cut(s) | 395 |
| Bpu10I | CCTNAGC | 1 cut(s) | 217 |
| BpuEI | CTTGAG | 2 cut(s) | 242, 309 |
| Bsa29I | ATCGAT | 1 cut(s) | 693 |
| BsaI | GGTCTC | 1 cut(s) | 460 |
| BsaJI | CCNNGG | 1 cut(s) | 798 |
| Bse1I | ACTGG | 3 cut(s) | 78, 217, 412 |
| BseBI | CCWGG | 1 cut(s) | 299 |
| BseCI | ATCGAT | 1 cut(s) | 693 |
| BseDI | CCNNGG | 1 cut(s) | 798 |
| BseGI | GGATG | 3 cut(s) | 174, 406, 768 |
| BseMII | CTCAG | 1 cut(s) | 231 |
| BseNI | ACTGG | 3 cut(s) | 78, 217, 412 |
| BseXI | GCAGC | 4 cut(s) | 20, 44, 70, 359 |
| Bsh1236I | CGCG | 1 cut(s) | 837 |
| BshFI | GGCC | 2 cut(s) | 94, 128 |
| BshVI | ATCGAT | 1 cut(s) | 693 |
| BsiHKAI | GWGCWC | 1 cut(s) | 732 |
| BsiHKCI | CYCGRG | 1 cut(s) | 287 |
| BsiSI | CCGG | 2 cut(s) | 91, 125 |
| BsmAI | GTCTC | 2 cut(s) | 460, 664 |
| BsmBI | CGTCTC | 1 cut(s) | 664 |
| BsnI | GGCC | 2 cut(s) | 94, 128 |
| Bso31I | GGTCTC | 1 cut(s) | 460 |
| BsoBI | CYCGRG | 1 cut(s) | 287 |
| Bsp1286I | GDGCHC | 1 cut(s) | 732 |
| Bsp143I | GATC | 3 cut(s) | 502, 612, 794 |
| BspACI | CCGC | 3 cut(s) | 11, 75, 529 |
| BspANI | GGCC | 2 cut(s) | 94, 128 |
| BspCNI | CTCAG | 1 cut(s) | 230 |
| BspDI | ATCGAT | 1 cut(s) | 693 |
| BspFNI | CGCG | 1 cut(s) | 837 |
| BspHI | TCATGA | 1 cut(s) | 724 |
| BspLI | GGNNCC | 1 cut(s) | 15 |
| BspPI | GGATC | 1 cut(s) | 789 |
| BspTNI | GGTCTC | 1 cut(s) | 460 |
| BsrI | ACTGG | 3 cut(s) | 78, 217, 412 |
| BssECI | CCNNGG | 1 cut(s) | 798 |
| BssMI | GATC | 3 cut(s) | 502, 612, 794 |
| Bst2UI | CCWGG | 1 cut(s) | 299 |
| Bst4CI | ACNGT | 4 cut(s) | 27, 230, 313, 703 |
| BstC8I | GCNNGC | 1 cut(s) | 321 |
| BstDEI | CTNAG | 3 cut(s) | 217, 352, 843 |
| BstDSI | CCRYGG | 1 cut(s) | 798 |
| BstF5I | GGATG | 3 cut(s) | 174, 406, 768 |
| BstFNI | CGCG | 1 cut(s) | 837 |
| BstH2I | RGCGCY | 1 cut(s) | 856 |
| BstHHI | GCGC | 2 cut(s) | 839, 855 |
| BstKTI | GATC | 3 cut(s) | 505, 615, 797 |
| BstMAI | GTCTC | 2 cut(s) | 460, 664 |
| BstMBI | GATC | 3 cut(s) | 502, 612, 794 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 41, 58, 335, 344, 356 |
| BstNI | CCWGG | 1 cut(s) | 299 |
| BstSCI | CCNGG | 1 cut(s) | 297 |
| BstSFI | CTRYAG | 1 cut(s) | 702 |
| BstUI | CGCG | 1 cut(s) | 837 |
| BstV1I | GCAGC | 4 cut(s) | 20, 44, 70, 359 |
| BstV2I | GAAGAC | 2 cut(s) | 441, 644 |
| BstX2I | RGATCY | 1 cut(s) | 794 |
| BstYI | RGATCY | 1 cut(s) | 794 |
| Bsu15I | ATCGAT | 1 cut(s) | 693 |
| BsuRI | GGCC | 2 cut(s) | 94, 128 |
| BsuTUI | ATCGAT | 1 cut(s) | 693 |
| BtgI | CCRYGG | 1 cut(s) | 798 |
| BtrI | CACGTC | 2 cut(s) | 39, 304 |
| BtsCI | GGATG | 3 cut(s) | 174, 406, 768 |
| BtsIMutI | CAGTG | 1 cut(s) | 85 |
| Cac8I | GCNNGC | 1 cut(s) | 321 |
| CciI | TCATGA | 1 cut(s) | 724 |
| CfoI | GCGC | 2 cut(s) | 839, 855 |
| Cfr13I | GGNCC | 1 cut(s) | 13 |
| ClaI | ATCGAT | 1 cut(s) | 693 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 780, 815 |
| CviAII | CATG | 3 cut(s) | 242, 725, 761 |
| DdeI | CTNAG | 3 cut(s) | 217, 352, 843 |
| DpnI | GATC | 3 cut(s) | 504, 614, 796 |
| DpnII | GATC | 3 cut(s) | 502, 612, 794 |
| EaeI | YGGCCR | 2 cut(s) | 92, 126 |
| Ecl136II | GAGCTC | 1 cut(s) | 730 |
| Eco24I | GRGCYC | 1 cut(s) | 732 |
| Eco31I | GGTCTC | 1 cut(s) | 460 |
| Eco32I | GATATC | 1 cut(s) | 224 |
| Eco47I | GGWCC | 1 cut(s) | 13 |
| Eco53kI | GAGCTC | 1 cut(s) | 730 |
| Eco88I | CYCGRG | 1 cut(s) | 287 |
| EcoICRI | GAGCTC | 1 cut(s) | 730 |
| EcoRI | GAATTC | 2 cut(s) | 596, 821 |
| EcoRII | CCWGG | 1 cut(s) | 297 |
| EcoRV | GATATC | 1 cut(s) | 224 |
| EcoT38I | GRGCYC | 1 cut(s) | 732 |
| Esp3I | CGTCTC | 1 cut(s) | 664 |
| FaeI | CATG | 3 cut(s) | 245, 728, 764 |
| FatI | CATG | 3 cut(s) | 241, 724, 760 |
| FauNDI | CATATG | 1 cut(s) | 396 |
| Fnu4HI | GCNGC | 4 cut(s) | 9, 33, 59, 348 |
| FokI | GGATG | 3 cut(s) | 181, 413, 755 |
| FriOI | GRGCYC | 1 cut(s) | 732 |
| Fsp4HI | GCNGC | 4 cut(s) | 9, 33, 59, 348 |
| FspBI | CTAG | 3 cut(s) | 294, 390, 506 |
| GlaI | GCGC | 2 cut(s) | 838, 854 |
| GluI | GCNGC | 4 cut(s) | 9, 33, 59, 348 |
| GsuI | CTGGAG | 1 cut(s) | 395 |
| HaeII | RGCGCY | 1 cut(s) | 856 |
| HaeIII | GGCC | 2 cut(s) | 94, 128 |
| HapII | CCGG | 2 cut(s) | 91, 125 |
| HhaI | GCGC | 2 cut(s) | 839, 855 |
| Hin1II | CATG | 3 cut(s) | 245, 728, 764 |
| Hin6I | GCGC | 2 cut(s) | 837, 853 |
| HinP1I | GCGC | 2 cut(s) | 837, 853 |
| HincII | GTYRAC | 1 cut(s) | 70 |
| HindII | GTYRAC | 1 cut(s) | 70 |
| HindIII | AAGCTT | 1 cut(s) | 327 |
| HinfI | GANTC | 7 cut(s) | 270, 283, 404, 488, 640, 690, 711 |
| HpaII | CCGG | 2 cut(s) | 91, 125 |
| Hpy166II | GTNNAC | 1 cut(s) | 70 |
| Hpy188I | TCNGA | 3 cut(s) | 152, 568, 820 |
| Hpy188III | TCNNGA | 7 cut(s) | 219, 287, 485, 500, 506, 725, 792 |
| Hpy8I | GTNNAC | 1 cut(s) | 70 |
| Hpy99I | CGWCG | 1 cut(s) | 156 |
| HpyAV | CCTTC | 2 cut(s) | 438, 661 |
| HpyCH4III | ACNGT | 4 cut(s) | 27, 230, 313, 703 |
| HpyCH4IV | ACGT | 3 cut(s) | 38, 303, 480 |
| HpyCH4V | TGCA | 3 cut(s) | 249, 579, 665 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 41, 58, 335, 344, 356 |
| HpyF3I | CTNAG | 3 cut(s) | 217, 352, 843 |
| HpySE526I | ACGT | 3 cut(s) | 38, 303, 480 |
| Hsp92II | CATG | 3 cut(s) | 245, 728, 764 |
| HspAI | GCGC | 2 cut(s) | 837, 853 |
| Kzo9I | GATC | 3 cut(s) | 502, 612, 794 |
| LmnI | GCTCC | 3 cut(s) | 202, 414, 737 |
| Lsp1109I | GCAGC | 4 cut(s) | 20, 44, 70, 359 |
| LweI | GCATC | 1 cut(s) | 70 |
| MaeI | CTAG | 3 cut(s) | 294, 390, 506 |
| MaeII | ACGT | 3 cut(s) | 38, 303, 480 |
| MaeIII | GTNAC | 3 cut(s) | 173, 485, 697 |
| MalI | GATC | 3 cut(s) | 504, 614, 796 |
| MboI | GATC | 3 cut(s) | 502, 612, 794 |
| MboII | GAAGA | 5 cut(s) | 443, 446, 476, 649, 790 |
| MflI | RGATCY | 1 cut(s) | 794 |
| MhlI | GDGCHC | 1 cut(s) | 732 |
| MluCI | AATT | 5 cut(s) | 144, 596, 787, 821, 826 |
| MlyI | GAGTC | 2 cut(s) | 482, 634 |
| MmeI | TCCRAC | 1 cut(s) | 175 |
| MnlI | CCTC | 3 cut(s) | 159, 349, 536 |
| MseI | TTAA | 3 cut(s) | 543, 582, 590 |
| MslI | CAYNNNNRTG | 3 cut(s) | 399, 620, 773 |
| MspA1I | CMGCKG | 1 cut(s) | 11 |
| MspI | CCGG | 2 cut(s) | 91, 125 |
| MspR9I | CCNGG | 1 cut(s) | 299 |
| MvaI | CCWGG | 1 cut(s) | 299 |
| MvnI | CGCG | 1 cut(s) | 837 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 41, 58, 335, 344, 356 |
| NdeI | CATATG | 1 cut(s) | 396 |
| NdeII | GATC | 3 cut(s) | 502, 612, 794 |
| NlaIII | CATG | 3 cut(s) | 245, 728, 764 |
| NlaIV | GGNNCC | 1 cut(s) | 15 |
| NmuCI | GTSAC | 1 cut(s) | 485 |
| OliI | CACNNNNGTG | 1 cut(s) | 620 |
| PaeR7I | CTCGAG | 1 cut(s) | 287 |
| PagI | TCATGA | 1 cut(s) | 724 |
| PfeI | GAWTC | 5 cut(s) | 270, 283, 404, 690, 711 |
| PkrI | GCNGC | 4 cut(s) | 10, 34, 60, 349 |
| PleI | GAGTC | 2 cut(s) | 482, 634 |
| PpsI | GAGTC | 2 cut(s) | 482, 634 |
| Psp124BI | GAGCTC | 1 cut(s) | 732 |
| Psp1406I | AACGTT | 1 cut(s) | 480 |
| Psp6I | CCWGG | 1 cut(s) | 297 |
| PspGI | CCWGG | 1 cut(s) | 297 |
| PspN4I | GGNNCC | 1 cut(s) | 15 |
| PspPI | GGNCC | 1 cut(s) | 13 |
| PsuI | RGATCY | 1 cut(s) | 794 |
| RseI | CAYNNNNRTG | 3 cut(s) | 399, 620, 773 |
| SacI | GAGCTC | 1 cut(s) | 732 |
| SaqAI | TTAA | 3 cut(s) | 543, 582, 590 |
| SatI | GCNGC | 4 cut(s) | 9, 33, 59, 348 |
| Sau3AI | GATC | 3 cut(s) | 502, 612, 794 |
| Sau96I | GGNCC | 1 cut(s) | 13 |
| SchI | GAGTC | 2 cut(s) | 482, 634 |
| ScrFI | CCNGG | 1 cut(s) | 299 |
| SduI | GDGCHC | 1 cut(s) | 732 |
| SfaNI | GCATC | 1 cut(s) | 70 |
| SfcI | CTRYAG | 1 cut(s) | 702 |
| Sfr274I | CTCGAG | 1 cut(s) | 287 |
| SinI | GGWCC | 1 cut(s) | 13 |
| SlaI | CTCGAG | 1 cut(s) | 287 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 399, 620, 773 |
| SmlI | CTYRAG | 3 cut(s) | 257, 287, 324 |
| SmoI | CTYRAG | 3 cut(s) | 257, 287, 324 |
| SpeI | ACTAGT | 1 cut(s) | 389 |
| Sse9I | AATT | 5 cut(s) | 144, 596, 787, 821, 826 |
| SsiI | CCGC | 3 cut(s) | 11, 75, 529 |
| SspMI | CTAG | 3 cut(s) | 294, 390, 506 |
| SstI | GAGCTC | 1 cut(s) | 732 |
| StyD4I | CCNGG | 1 cut(s) | 297 |
| TaaI | ACNGT | 4 cut(s) | 27, 230, 313, 703 |
| TaiI | ACGT | 3 cut(s) | 41, 306, 483 |
| TaqI | TCGA | 5 cut(s) | 164, 288, 462, 688, 693 |
| TasI | AATT | 5 cut(s) | 144, 596, 787, 821, 826 |
| TfiI | GAWTC | 5 cut(s) | 270, 283, 404, 690, 711 |
| Tru1I | TTAA | 3 cut(s) | 543, 582, 590 |
| Tru9I | TTAA | 3 cut(s) | 543, 582, 590 |
| TscAI | CASTG | 1 cut(s) | 85 |
| TseFI | GTSAC | 1 cut(s) | 485 |
| TseI | GCWGC | 4 cut(s) | 8, 32, 58, 347 |
| Tsp45I | GTSAC | 1 cut(s) | 485 |
| TspDTI | ATGAA | 3 cut(s) | 444, 713, 758 |
| TspGWI | ACGGA | 1 cut(s) | 787 |
| TspRI | CASTG | 1 cut(s) | 85 |
| VpaK11BI | GGWCC | 1 cut(s) | 13 |
| XapI | RAATTY | 3 cut(s) | 144, 596, 821 |
| XbaI | TCTAGA | 1 cut(s) | 505 |
| XhoI | CTCGAG | 1 cut(s) | 287 |
| XspI | CTAG | 3 cut(s) | 294, 390, 506 |