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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 693 |
| AccI | GTMKAC | 1 cut(s) | 685 |
| AciI | CCGC | 1 cut(s) | 140 |
| AclWI | GGATC | 3 cut(s) | 76, 371, 583 |
| AcsI | RAATTY | 1 cut(s) | 598 |
| AcuI | CTGAAG | 1 cut(s) | 612 |
| AdeI | CACNNNGTG | 1 cut(s) | 520 |
| AfaI | GTAC | 2 cut(s) | 206, 874 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 360 |
| AgsI | TTSAA | 5 cut(s) | 92, 196, 320, 419, 991 |
| AjiI | CACGTC | 1 cut(s) | 632 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1003, 1035 |
| AluBI | AGCT | 4 cut(s) | 152, 541, 653, 779 |
| AluI | AGCT | 4 cut(s) | 152, 541, 653, 779 |
| Alw21I | GWGCWC | 3 cut(s) | 282, 543, 781 |
| Alw26I | GTCTC | 1 cut(s) | 567 |
| AlwI | GGATC | 3 cut(s) | 76, 371, 583 |
| AoxI | GGCC | 4 cut(s) | 66, 107, 727, 861 |
| ApaI | GGGCCC | 2 cut(s) | 70, 731 |
| ApoI | RAATTY | 1 cut(s) | 598 |
| AspLEI | GCGC | 2 cut(s) | 315, 856 |
| AspS9I | GGNCC | 7 cut(s) | 66, 67, 107, 727, 728, 862, 954 |
| AsuHPI | GGTGA | 4 cut(s) | 167, 358, 478, 1012 |
| AsuII | TTCGAA | 1 cut(s) | 911 |
| AvaII | GGWCC | 1 cut(s) | 954 |
| AxyI | CCTNAGG | 1 cut(s) | 285 |
| BaeGI | GKGCMC | 2 cut(s) | 70, 731 |
| BanII | GRGCYC | 5 cut(s) | 70, 543, 731, 781, 806 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 188, 220 |
| BbsI | GAAGAC | 1 cut(s) | 971 |
| Bbv12I | GWGCWC | 3 cut(s) | 282, 543, 781 |
| BccI | CCATC | 4 cut(s) | 93, 186, 192, 564 |
| BcoDI | GTCTC | 1 cut(s) | 567 |
| BfaI | CTAG | 1 cut(s) | 45 |
| BfmI | CTRYAG | 1 cut(s) | 570 |
| BlpI | GCTNAGC | 1 cut(s) | 525 |
| BmcAI | AGTACT | 1 cut(s) | 206 |
| Bme18I | GGWCC | 1 cut(s) | 954 |
| BmgBI | CACGTC | 1 cut(s) | 632 |
| BmgT120I | GGNCC | 7 cut(s) | 66, 67, 107, 727, 728, 862, 954 |
| BmiI | GGNNCC | 2 cut(s) | 68, 729 |
| BmsI | GCATC | 2 cut(s) | 294, 402 |
| BpiI | GAAGAC | 1 cut(s) | 971 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 525 |
| Bpu14I | TTCGAA | 1 cut(s) | 911 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BsaJI | CCNNGG | 3 cut(s) | 103, 661, 731 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 360 |
| Bse118I | RCCGGY | 1 cut(s) | 856 |
| Bse21I | CCTNAGG | 1 cut(s) | 285 |
| Bse3DI | GCAATG | 1 cut(s) | 849 |
| BseDI | CCNNGG | 3 cut(s) | 103, 661, 731 |
| BseGI | GGATG | 1 cut(s) | 309 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 360 |
| BseMI | GCAATG | 1 cut(s) | 849 |
| BseMII | CTCAG | 4 cut(s) | 416, 516, 819, 890 |
| BseSI | GKGCMC | 2 cut(s) | 70, 731 |
| BshFI | GGCC | 4 cut(s) | 68, 109, 729, 863 |
| BsiHKAI | GWGCWC | 3 cut(s) | 282, 543, 781 |
| BsiSI | CCGG | 2 cut(s) | 841, 857 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 360 |
| BsmAI | GTCTC | 1 cut(s) | 567 |
| BsnI | GGCC | 4 cut(s) | 68, 109, 729, 863 |
| Bsp119I | TTCGAA | 1 cut(s) | 911 |
| Bsp120I | GGGCCC | 2 cut(s) | 66, 727 |
| Bsp1286I | GDGCHC | 6 cut(s) | 70, 282, 543, 731, 781, 806 |
| Bsp143I | GATC | 5 cut(s) | 81, 114, 363, 499, 575 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 525 |
| Bsp19I | CCATGG | 1 cut(s) | 661 |
| BspACI | CCGC | 1 cut(s) | 140 |
| BspANI | GGCC | 4 cut(s) | 68, 109, 729, 863 |
| BspCNI | CTCAG | 4 cut(s) | 415, 517, 818, 891 |
| BspHI | TCATGA | 2 cut(s) | 619, 790 |
| BspLI | GGNNCC | 2 cut(s) | 68, 729 |
| BspPI | GGATC | 3 cut(s) | 76, 371, 583 |
| BspQI | GCTCTTC | 1 cut(s) | 908 |
| BspT104I | TTCGAA | 1 cut(s) | 911 |
| BsrDI | GCAATG | 1 cut(s) | 849 |
| BsrFI | RCCGGY | 1 cut(s) | 856 |
| BssAI | RCCGGY | 1 cut(s) | 856 |
| BssECI | CCNNGG | 3 cut(s) | 103, 661, 731 |
| BssMI | GATC | 5 cut(s) | 81, 114, 363, 499, 575 |
| BssT1I | CCWWGG | 3 cut(s) | 103, 661, 731 |
| Bst4CI | ACNGT | 3 cut(s) | 214, 274, 329 |
| Bst6I | CTCTTC | 2 cut(s) | 908, 990 |
| BstBI | TTCGAA | 1 cut(s) | 911 |
| BstDEI | CTNAG | 6 cut(s) | 285, 402, 525, 805, 899, 948 |
| BstDSI | CCRYGG | 1 cut(s) | 661 |
| BstF5I | GGATG | 1 cut(s) | 309 |
| BstHHI | GCGC | 2 cut(s) | 315, 856 |
| BstKTI | GATC | 5 cut(s) | 84, 117, 366, 502, 578 |
| BstMAI | GTCTC | 1 cut(s) | 567 |
| BstMBI | GATC | 5 cut(s) | 81, 114, 363, 499, 575 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 860 |
| BstNSI | RCATGY | 1 cut(s) | 929 |
| BstSFI | CTRYAG | 1 cut(s) | 570 |
| BstSLI | GKGCMC | 2 cut(s) | 70, 731 |
| BstV2I | GAAGAC | 1 cut(s) | 971 |
| BstX2I | RGATCY | 1 cut(s) | 81 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 104 |
| BstYI | RGATCY | 1 cut(s) | 81 |
| Bsu36I | CCTNAGG | 1 cut(s) | 285 |
| BsuRI | GGCC | 4 cut(s) | 68, 109, 729, 863 |
| BtgI | CCRYGG | 1 cut(s) | 661 |
| BtrI | CACGTC | 1 cut(s) | 632 |
| BtsCI | GGATG | 1 cut(s) | 309 |
| BtsIMutI | CAGTG | 1 cut(s) | 881 |
| CciI | TCATGA | 2 cut(s) | 619, 790 |
| CfoI | GCGC | 2 cut(s) | 315, 856 |
| Cfr10I | RCCGGY | 1 cut(s) | 856 |
| Cfr13I | GGNCC | 7 cut(s) | 66, 67, 107, 727, 728, 862, 954 |
| CseI | GACGC | 1 cut(s) | 161 |
| Csp6I | GTAC | 2 cut(s) | 205, 873 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 613, 648 |
| CviQI | GTAC | 2 cut(s) | 205, 873 |
| DdeI | CTNAG | 6 cut(s) | 285, 402, 525, 805, 899, 948 |
| DpnI | GATC | 5 cut(s) | 83, 116, 365, 501, 577 |
| DpnII | GATC | 5 cut(s) | 81, 114, 363, 499, 575 |
| DraIII | CACNNNGTG | 1 cut(s) | 520 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 693 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 693 |
| Eam1104I | CTCTTC | 2 cut(s) | 908, 990 |
| EarI | CTCTTC | 2 cut(s) | 908, 990 |
| Ecl136II | GAGCTC | 2 cut(s) | 541, 779 |
| Eco130I | CCWWGG | 3 cut(s) | 103, 661, 731 |
| Eco24I | GRGCYC | 5 cut(s) | 70, 543, 731, 781, 806 |
| Eco47I | GGWCC | 1 cut(s) | 954 |
| Eco53kI | GAGCTC | 2 cut(s) | 541, 779 |
| Eco57I | CTGAAG | 1 cut(s) | 612 |
| Eco81I | CCTNAGG | 1 cut(s) | 285 |
| EcoICRI | GAGCTC | 2 cut(s) | 541, 779 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoRI | GAATTC | 1 cut(s) | 598 |
| EcoT14I | CCWWGG | 3 cut(s) | 103, 661, 731 |
| EcoT22I | ATGCAT | 1 cut(s) | 309 |
| EcoT38I | GRGCYC | 5 cut(s) | 70, 543, 731, 781, 806 |
| ErhI | CCWWGG | 3 cut(s) | 103, 661, 731 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 210, 242, 802, 834, 961, 993 |
| FauI | CCCGC | 1 cut(s) | 147 |
| FblI | GTMKAC | 1 cut(s) | 685 |
| FokI | GGATG | 1 cut(s) | 316 |
| FriOI | GRGCYC | 5 cut(s) | 70, 543, 731, 781, 806 |
| FspBI | CTAG | 1 cut(s) | 45 |
| GlaI | GCGC | 2 cut(s) | 314, 855 |
| HaeIII | GGCC | 4 cut(s) | 68, 109, 729, 863 |
| HapII | CCGG | 2 cut(s) | 841, 857 |
| HgaI | GACGC | 1 cut(s) | 161 |
| HhaI | GCGC | 2 cut(s) | 315, 856 |
| Hin6I | GCGC | 2 cut(s) | 313, 854 |
| HinP1I | GCGC | 2 cut(s) | 313, 854 |
| HincII | GTYRAC | 1 cut(s) | 686 |
| HindII | GTYRAC | 1 cut(s) | 686 |
| HinfI | GANTC | 2 cut(s) | 483, 983 |
| HpaII | CCGG | 2 cut(s) | 841, 857 |
| HphI | GGTGA | 4 cut(s) | 167, 358, 478, 1012 |
| Hpy166II | GTNNAC | 2 cut(s) | 686, 905 |
| Hpy188I | TCNGA | 5 cut(s) | 499, 768, 776, 816, 900 |
| Hpy188III | TCNNGA | 7 cut(s) | 89, 320, 361, 404, 620, 745, 791 |
| Hpy8I | GTNNAC | 2 cut(s) | 686, 905 |
| HpyAV | CCTTC | 5 cut(s) | 116, 190, 326, 633, 925 |
| HpyCH4III | ACNGT | 3 cut(s) | 214, 274, 329 |
| HpyCH4IV | ACGT | 4 cut(s) | 292, 425, 631, 875 |
| HpyCH4V | TGCA | 1 cut(s) | 307 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 860 |
| HpyF3I | CTNAG | 6 cut(s) | 285, 402, 525, 805, 899, 948 |
| HpySE526I | ACGT | 4 cut(s) | 292, 425, 631, 875 |
| HspAI | GCGC | 2 cut(s) | 313, 854 |
| Kzo9I | GATC | 5 cut(s) | 81, 114, 363, 499, 575 |
| LguI | GCTCTTC | 1 cut(s) | 908 |
| LmnI | GCTCC | 2 cut(s) | 285, 546 |
| LweI | GCATC | 2 cut(s) | 294, 402 |
| MaeI | CTAG | 1 cut(s) | 45 |
| MaeII | ACGT | 4 cut(s) | 292, 425, 631, 875 |
| MaeIII | GTNAC | 5 cut(s) | 173, 397, 512, 710, 1000 |
| MalI | GATC | 5 cut(s) | 83, 116, 365, 501, 577 |
| MboI | GATC | 5 cut(s) | 81, 114, 363, 499, 575 |
| MboII | GAAGA | 6 cut(s) | 562, 925, 973, 976, 1007, 1014 |
| MflI | RGATCY | 1 cut(s) | 81 |
| MhlI | GDGCHC | 6 cut(s) | 70, 282, 543, 731, 781, 806 |
| MluCI | AATT | 5 cut(s) | 7, 17, 346, 393, 598 |
| MlyI | GAGTC | 1 cut(s) | 992 |
| MnlI | CCTC | 4 cut(s) | 379, 473, 945, 991 |
| Mph1103I | ATGCAT | 1 cut(s) | 309 |
| MseI | TTAA | 2 cut(s) | 209, 446 |
| MslI | CAYNNNNRTG | 4 cut(s) | 624, 660, 672, 924 |
| MspI | CCGG | 2 cut(s) | 841, 857 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 860 |
| NcoI | CCATGG | 1 cut(s) | 661 |
| NdeII | GATC | 5 cut(s) | 81, 114, 363, 499, 575 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 729 |
| NmuCI | GTSAC | 4 cut(s) | 173, 397, 512, 1000 |
| NsiI | ATGCAT | 1 cut(s) | 309 |
| NspI | RCATGY | 1 cut(s) | 929 |
| NspV | TTCGAA | 1 cut(s) | 911 |
| PagI | TCATGA | 2 cut(s) | 619, 790 |
| PciSI | GCTCTTC | 1 cut(s) | 908 |
| PfeI | GAWTC | 1 cut(s) | 483 |
| PflFI | GACNNNGTC | 1 cut(s) | 26 |
| PleI | GAGTC | 1 cut(s) | 991 |
| PpsI | GAGTC | 1 cut(s) | 991 |
| Psp124BI | GAGCTC | 2 cut(s) | 543, 781 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 729 |
| PspOMI | GGGCCC | 2 cut(s) | 66, 727 |
| PspPI | GGNCC | 7 cut(s) | 66, 67, 107, 727, 728, 862, 954 |
| PsuI | RGATCY | 1 cut(s) | 81 |
| PsyI | GACNNNGTC | 1 cut(s) | 26 |
| RsaI | GTAC | 2 cut(s) | 206, 874 |
| RsaNI | GTAC | 2 cut(s) | 205, 873 |
| RseI | CAYNNNNRTG | 4 cut(s) | 624, 660, 672, 924 |
| SacI | GAGCTC | 2 cut(s) | 543, 781 |
| SalI | GTCGAC | 1 cut(s) | 684 |
| SapI | GCTCTTC | 1 cut(s) | 908 |
| SaqAI | TTAA | 2 cut(s) | 209, 446 |
| Sau3AI | GATC | 5 cut(s) | 81, 114, 363, 499, 575 |
| Sau96I | GGNCC | 7 cut(s) | 66, 67, 107, 727, 728, 862, 954 |
| ScaI | AGTACT | 1 cut(s) | 206 |
| SchI | GAGTC | 1 cut(s) | 992 |
| SduI | GDGCHC | 6 cut(s) | 70, 282, 543, 731, 781, 806 |
| SfaNI | GCATC | 2 cut(s) | 294, 402 |
| SfcI | CTRYAG | 1 cut(s) | 570 |
| SfuI | TTCGAA | 1 cut(s) | 911 |
| SgrAI | CRCCGGYG | 1 cut(s) | 856 |
| SinI | GGWCC | 1 cut(s) | 954 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 624, 660, 672, 924 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 5 cut(s) | 7, 17, 346, 393, 598 |
| SsiI | CCGC | 1 cut(s) | 140 |
| SspMI | CTAG | 1 cut(s) | 45 |
| SstI | GAGCTC | 2 cut(s) | 543, 781 |
| StyI | CCWWGG | 3 cut(s) | 103, 661, 731 |
| TaaI | ACNGT | 3 cut(s) | 214, 274, 329 |
| TaiI | ACGT | 4 cut(s) | 295, 428, 634, 878 |
| TaqI | TCGA | 3 cut(s) | 472, 685, 911 |
| TasI | AATT | 5 cut(s) | 7, 17, 346, 393, 598 |
| TatI | WGTACW | 1 cut(s) | 204 |
| TfiI | GAWTC | 1 cut(s) | 483 |
| Tru1I | TTAA | 2 cut(s) | 209, 446 |
| Tru9I | TTAA | 2 cut(s) | 209, 446 |
| TscAI | CASTG | 1 cut(s) | 888 |
| TseFI | GTSAC | 4 cut(s) | 173, 397, 512, 1000 |
| Tsp45I | GTSAC | 4 cut(s) | 173, 397, 512, 1000 |
| TspDTI | ATGAA | 5 cut(s) | 312, 392, 428, 563, 838 |
| TspRI | CASTG | 1 cut(s) | 888 |
| Tth111I | GACNNNGTC | 1 cut(s) | 26 |
| VpaK11BI | GGWCC | 1 cut(s) | 954 |
| XapI | RAATTY | 1 cut(s) | 598 |
| XceI | RCATGY | 1 cut(s) | 929 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 231 |
| XmiI | GTMKAC | 1 cut(s) | 685 |
| XspI | CTAG | 1 cut(s) | 45 |
| ZrmI | AGTACT | 1 cut(s) | 206 |
| Zsp2I | ATGCAT | 1 cut(s) | 309 |