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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 583, 743 |
| AccI | GTMKAC | 1 cut(s) | 315 |
| AccII | CGCG | 1 cut(s) | 698 |
| AciI | CCGC | 4 cut(s) | 6, 504, 698, 813 |
| AclWI | GGATC | 3 cut(s) | 23, 36, 472 |
| AcsI | RAATTY | 2 cut(s) | 353, 1039 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 686, 878 |
| AflII | CTTAAG | 1 cut(s) | 16 |
| AgsI | TTSAA | 1 cut(s) | 301 |
| AjnI | CCWGG | 2 cut(s) | 31, 748 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 213, 245, 986, 1018 |
| AluBI | AGCT | 3 cut(s) | 408, 441, 965 |
| AluI | AGCT | 3 cut(s) | 408, 441, 965 |
| Alw21I | GWGCWC | 1 cut(s) | 650 |
| Alw26I | GTCTC | 1 cut(s) | 807 |
| AlwI | GGATC | 3 cut(s) | 23, 36, 472 |
| AoxI | GGCC | 3 cut(s) | 20, 908, 957 |
| ApeKI | GCWGC | 3 cut(s) | 104, 457, 758 |
| ApoI | RAATTY | 2 cut(s) | 353, 1039 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 330 |
| AspLEI | GCGC | 1 cut(s) | 698 |
| AspS9I | GGNCC | 2 cut(s) | 700, 958 |
| AsuHPI | GGTGA | 2 cut(s) | 757, 764 |
| AsuII | TTCGAA | 1 cut(s) | 992 |
| AvaII | GGWCC | 1 cut(s) | 700 |
| BamHI | GGATCC | 1 cut(s) | 28 |
| BanI | GGYRCC | 2 cut(s) | 583, 743 |
| BauI | CACGAG | 1 cut(s) | 983 |
| BbsI | GAAGAC | 1 cut(s) | 198 |
| Bbv12I | GWGCWC | 1 cut(s) | 650 |
| BbvI | GCAGC | 3 cut(s) | 116, 469, 745 |
| BccI | CCATC | 9 cut(s) | 267, 343, 421, 422, 595, 716, 734, 856, 899 |
| BceAI | ACGGC | 1 cut(s) | 116 |
| BciT130I | CCWGG | 2 cut(s) | 33, 750 |
| BciVI | GTATCC | 1 cut(s) | 189 |
| BclI | TGATCA | 1 cut(s) | 1023 |
| BcoDI | GTCTC | 1 cut(s) | 807 |
| BfaI | CTAG | 4 cut(s) | 51, 941, 962, 1061 |
| BfmI | CTRYAG | 1 cut(s) | 455 |
| BfrI | CTTAAG | 1 cut(s) | 16 |
| BfuI | GTATCC | 1 cut(s) | 189 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 113 |
| BisI | GCNGC | 3 cut(s) | 105, 458, 759 |
| BlsI | GCNGC | 3 cut(s) | 106, 459, 760 |
| Bme1390I | CCNGG | 2 cut(s) | 33, 750 |
| Bme18I | GGWCC | 1 cut(s) | 700 |
| BmgT120I | GGNCC | 2 cut(s) | 700, 958 |
| BmiI | GGNNCC | 4 cut(s) | 30, 526, 585, 745 |
| BmrFI | CCNGG | 2 cut(s) | 33, 750 |
| BmsI | GCATC | 4 cut(s) | 367, 372, 685, 745 |
| BpiI | GAAGAC | 1 cut(s) | 198 |
| Bpu14I | TTCGAA | 1 cut(s) | 992 |
| BpuEI | CTTGAG | 2 cut(s) | 65, 152 |
| BsaAI | YACGTR | 1 cut(s) | 974 |
| BsaJI | CCNNGG | 4 cut(s) | 23, 108, 717, 748 |
| BsaWI | WCCGGW | 1 cut(s) | 679 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 686, 878 |
| Bse3DI | GCAATG | 1 cut(s) | 241 |
| BseBI | CCWGG | 2 cut(s) | 33, 750 |
| BseDI | CCNNGG | 4 cut(s) | 23, 108, 717, 748 |
| BseGI | GGATG | 8 cut(s) | 64, 135, 163, 676, 727, 867, 871, 891 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 686, 878 |
| BseMI | GCAATG | 1 cut(s) | 241 |
| BseMII | CTCAG | 2 cut(s) | 377, 635 |
| BseXI | GCAGC | 3 cut(s) | 116, 469, 745 |
| Bsh1236I | CGCG | 1 cut(s) | 698 |
| BshFI | GGCC | 3 cut(s) | 22, 910, 959 |
| BshNI | GGYRCC | 2 cut(s) | 583, 743 |
| BsiHKAI | GWGCWC | 1 cut(s) | 650 |
| BsiSI | CCGG | 1 cut(s) | 680 |
| BslFI | GGGAC | 3 cut(s) | 713, 776, 854 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 686, 878 |
| BsmAI | GTCTC | 1 cut(s) | 807 |
| BsmFI | GGGAC | 3 cut(s) | 713, 776, 854 |
| BsmI | GAATGC | 2 cut(s) | 230, 936 |
| BsnI | GGCC | 3 cut(s) | 22, 910, 959 |
| Bsp119I | TTCGAA | 1 cut(s) | 992 |
| Bsp1286I | GDGCHC | 1 cut(s) | 650 |
| Bsp143I | GATC | 4 cut(s) | 28, 464, 827, 1023 |
| Bsp19I | CCATGG | 1 cut(s) | 717 |
| BspACI | CCGC | 4 cut(s) | 6, 504, 698, 813 |
| BspANI | GGCC | 3 cut(s) | 22, 910, 959 |
| BspCNI | CTCAG | 2 cut(s) | 378, 636 |
| BspFNI | CGCG | 1 cut(s) | 698 |
| BspHI | TCATGA | 2 cut(s) | 733, 1048 |
| BspLI | GGNNCC | 4 cut(s) | 30, 526, 585, 745 |
| BspMAI | CTGCAG | 1 cut(s) | 459 |
| BspPI | GGATC | 3 cut(s) | 23, 36, 472 |
| BspT104I | TTCGAA | 1 cut(s) | 992 |
| BspT107I | GGYRCC | 2 cut(s) | 583, 743 |
| BspTI | CTTAAG | 1 cut(s) | 16 |
| BsrDI | GCAATG | 1 cut(s) | 241 |
| BssECI | CCNNGG | 4 cut(s) | 23, 108, 717, 748 |
| BssMI | GATC | 4 cut(s) | 28, 464, 827, 1023 |
| BssSI | CACGAG | 1 cut(s) | 983 |
| BssT1I | CCWWGG | 3 cut(s) | 23, 108, 717 |
| Bst2BI | CACGAG | 1 cut(s) | 983 |
| Bst2UI | CCWGG | 2 cut(s) | 33, 750 |
| Bst4CI | ACNGT | 1 cut(s) | 70 |
| Bst6I | CTCTTC | 2 cut(s) | 153, 525 |
| BstAFI | CTTAAG | 1 cut(s) | 16 |
| BstBAI | YACGTR | 1 cut(s) | 974 |
| BstBI | TTCGAA | 1 cut(s) | 992 |
| BstC8I | GCNNGC | 3 cut(s) | 694, 855, 912 |
| BstDEI | CTNAG | 4 cut(s) | 262, 386, 596, 644 |
| BstDSI | CCRYGG | 1 cut(s) | 717 |
| BstEII | GGTNACC | 1 cut(s) | 499 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 876 |
| BstF5I | GGATG | 8 cut(s) | 64, 135, 163, 676, 727, 867, 871, 891 |
| BstFNI | CGCG | 1 cut(s) | 698 |
| BstHHI | GCGC | 1 cut(s) | 698 |
| BstKTI | GATC | 4 cut(s) | 31, 467, 830, 1026 |
| BstMAI | GTCTC | 1 cut(s) | 807 |
| BstMBI | GATC | 4 cut(s) | 28, 464, 827, 1023 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 101, 113, 950 |
| BstNI | CCWGG | 2 cut(s) | 33, 750 |
| BstNSI | RCATGY | 1 cut(s) | 853 |
| BstPI | GGTNACC | 1 cut(s) | 499 |
| BstSCI | CCNGG | 2 cut(s) | 31, 748 |
| BstSFI | CTRYAG | 1 cut(s) | 455 |
| BstUI | CGCG | 1 cut(s) | 698 |
| BstV1I | GCAGC | 3 cut(s) | 116, 469, 745 |
| BstV2I | GAAGAC | 1 cut(s) | 198 |
| BstX2I | RGATCY | 1 cut(s) | 28 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 580 |
| BstYI | RGATCY | 1 cut(s) | 28 |
| BsuI | GTATCC | 1 cut(s) | 189 |
| BsuRI | GGCC | 3 cut(s) | 22, 910, 959 |
| BtgI | CCRYGG | 1 cut(s) | 717 |
| BtgZI | GCGATG | 1 cut(s) | 395 |
| BtsCI | GGATG | 8 cut(s) | 64, 135, 163, 676, 727, 867, 871, 891 |
| BtsIMutI | CAGTG | 1 cut(s) | 372 |
| Cac8I | GCNNGC | 3 cut(s) | 694, 855, 912 |
| CciI | TCATGA | 2 cut(s) | 733, 1048 |
| CfoI | GCGC | 1 cut(s) | 698 |
| Cfr13I | GGNCC | 2 cut(s) | 700, 958 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 496, 531 |
| CviAII | CATG | 7 cut(s) | 521, 574, 710, 718, 734, 850, 1049 |
| DdeI | CTNAG | 4 cut(s) | 262, 386, 596, 644 |
| DpnI | GATC | 4 cut(s) | 30, 466, 829, 1025 |
| DpnII | GATC | 4 cut(s) | 28, 464, 827, 1023 |
| DraI | TTTAAA | 1 cut(s) | 621 |
| Eam1104I | CTCTTC | 2 cut(s) | 153, 525 |
| EarI | CTCTTC | 2 cut(s) | 153, 525 |
| Eco130I | CCWWGG | 3 cut(s) | 23, 108, 717 |
| Eco147I | AGGCCT | 1 cut(s) | 910 |
| Eco47I | GGWCC | 1 cut(s) | 700 |
| Eco91I | GGTNACC | 1 cut(s) | 499 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 876 |
| EcoO65I | GGTNACC | 1 cut(s) | 499 |
| EcoRI | GAATTC | 1 cut(s) | 353 |
| EcoRII | CCWGG | 2 cut(s) | 31, 748 |
| EcoT14I | CCWWGG | 3 cut(s) | 23, 108, 717 |
| ErhI | CCWWGG | 3 cut(s) | 23, 108, 717 |
| FaeI | CATG | 7 cut(s) | 524, 577, 713, 721, 737, 853, 1052 |
| FaqI | GGGAC | 3 cut(s) | 713, 776, 854 |
| FatI | CATG | 7 cut(s) | 520, 573, 709, 717, 733, 849, 1048 |
| FauI | CCCGC | 1 cut(s) | 820 |
| FauNDI | CATATG | 1 cut(s) | 153 |
| FbaI | TGATCA | 1 cut(s) | 1023 |
| FblI | GTMKAC | 1 cut(s) | 315 |
| Fnu4HI | GCNGC | 3 cut(s) | 105, 458, 759 |
| FokI | GGATG | 8 cut(s) | 71, 122, 170, 663, 734, 874, 878, 878 |
| Fsp4HI | GCNGC | 3 cut(s) | 105, 458, 759 |
| FspBI | CTAG | 4 cut(s) | 51, 941, 962, 1061 |
| GlaI | GCGC | 1 cut(s) | 697 |
| GluI | GCNGC | 3 cut(s) | 105, 458, 759 |
| HaeIII | GGCC | 3 cut(s) | 22, 910, 959 |
| HapII | CCGG | 1 cut(s) | 680 |
| HhaI | GCGC | 1 cut(s) | 698 |
| Hin1II | CATG | 7 cut(s) | 524, 577, 713, 721, 737, 853, 1052 |
| Hin6I | GCGC | 1 cut(s) | 696 |
| HinP1I | GCGC | 1 cut(s) | 696 |
| HincII | GTYRAC | 1 cut(s) | 538 |
| HindII | GTYRAC | 1 cut(s) | 538 |
| HinfI | GANTC | 8 cut(s) | 40, 145, 161, 245, 397, 640, 726, 989 |
| HpaII | CCGG | 1 cut(s) | 680 |
| HphI | GGTGA | 2 cut(s) | 757, 764 |
| Hpy166II | GTNNAC | 3 cut(s) | 316, 518, 538 |
| Hpy188I | TCNGA | 3 cut(s) | 183, 325, 645 |
| Hpy188III | TCNNGA | 7 cut(s) | 44, 56, 257, 665, 734, 1049, 1061 |
| Hpy8I | GTNNAC | 3 cut(s) | 316, 518, 538 |
| HpyAV | CCTTC | 2 cut(s) | 195, 490 |
| HpyCH4III | ACNGT | 1 cut(s) | 70 |
| HpyCH4IV | ACGT | 3 cut(s) | 540, 883, 973 |
| HpyCH4V | TGCA | 4 cut(s) | 457, 761, 845, 857 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 101, 113, 950 |
| HpyF3I | CTNAG | 4 cut(s) | 262, 386, 596, 644 |
| HpySE526I | ACGT | 3 cut(s) | 540, 883, 973 |
| Hsp92II | CATG | 7 cut(s) | 524, 577, 713, 721, 737, 853, 1052 |
| HspAI | GCGC | 1 cut(s) | 696 |
| Ksp22I | TGATCA | 1 cut(s) | 1023 |
| Kzo9I | GATC | 4 cut(s) | 28, 464, 827, 1023 |
| LmnI | GCTCC | 1 cut(s) | 673 |
| Lsp1109I | GCAGC | 3 cut(s) | 116, 469, 745 |
| LweI | GCATC | 4 cut(s) | 367, 372, 685, 745 |
| MaeI | CTAG | 4 cut(s) | 51, 941, 962, 1061 |
| MaeII | ACGT | 3 cut(s) | 540, 883, 973 |
| MaeIII | GTNAC | 4 cut(s) | 242, 450, 499, 820 |
| MalI | GATC | 4 cut(s) | 30, 466, 829, 1025 |
| MboI | GATC | 4 cut(s) | 28, 464, 827, 1023 |
| MboII | GAAGA | 5 cut(s) | 140, 200, 203, 233, 542 |
| MflI | RGATCY | 1 cut(s) | 28 |
| MhlI | GDGCHC | 1 cut(s) | 650 |
| MluCI | AATT | 2 cut(s) | 353, 1039 |
| MlyI | GAGTC | 5 cut(s) | 139, 239, 391, 649, 735 |
| MnlI | CCTC | 9 cut(s) | 106, 526, 546, 550, 576, 741, 872, 896, 972 |
| MroXI | GAANNNNTTC | 1 cut(s) | 330 |
| MseI | TTAA | 6 cut(s) | 17, 339, 435, 620, 630, 1066 |
| MslI | CAYNNNNRTG | 7 cut(s) | 140, 156, 578, 653, 708, 738, 1053 |
| MspCI | CTTAAG | 1 cut(s) | 16 |
| MspI | CCGG | 1 cut(s) | 680 |
| MspR9I | CCNGG | 2 cut(s) | 33, 750 |
| Mva1269I | GAATGC | 2 cut(s) | 230, 936 |
| MvaI | CCWGG | 2 cut(s) | 33, 750 |
| MvnI | CGCG | 1 cut(s) | 698 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 101, 113, 950 |
| NcoI | CCATGG | 1 cut(s) | 717 |
| NdeI | CATATG | 1 cut(s) | 153 |
| NdeII | GATC | 4 cut(s) | 28, 464, 827, 1023 |
| NlaIII | CATG | 7 cut(s) | 524, 577, 713, 721, 737, 853, 1052 |
| NlaIV | GGNNCC | 4 cut(s) | 30, 526, 585, 745 |
| NmuCI | GTSAC | 2 cut(s) | 242, 820 |
| NspI | RCATGY | 1 cut(s) | 853 |
| NspV | TTCGAA | 1 cut(s) | 992 |
| PagI | TCATGA | 2 cut(s) | 733, 1048 |
| PceI | AGGCCT | 1 cut(s) | 910 |
| PctI | GAATGC | 2 cut(s) | 230, 936 |
| PdmI | GAANNNNTTC | 1 cut(s) | 330 |
| PfeI | GAWTC | 3 cut(s) | 40, 161, 989 |
| PfoI | TCCNGGA | 1 cut(s) | 31 |
| PkrI | GCNGC | 3 cut(s) | 106, 459, 760 |
| PleI | GAGTC | 5 cut(s) | 139, 239, 391, 648, 734 |
| PpsI | GAGTC | 5 cut(s) | 139, 239, 391, 648, 734 |
| Ppu21I | YACGTR | 1 cut(s) | 974 |
| Psp6I | CCWGG | 2 cut(s) | 31, 748 |
| PspEI | GGTNACC | 1 cut(s) | 499 |
| PspGI | CCWGG | 2 cut(s) | 31, 748 |
| PspN4I | GGNNCC | 4 cut(s) | 30, 526, 585, 745 |
| PspPI | GGNCC | 2 cut(s) | 700, 958 |
| PstI | CTGCAG | 1 cut(s) | 459 |
| PsuI | RGATCY | 1 cut(s) | 28 |
| RseI | CAYNNNNRTG | 7 cut(s) | 140, 156, 578, 653, 708, 738, 1053 |
| SaqAI | TTAA | 6 cut(s) | 17, 339, 435, 620, 630, 1066 |
| SatI | GCNGC | 3 cut(s) | 105, 458, 759 |
| Sau3AI | GATC | 4 cut(s) | 28, 464, 827, 1023 |
| Sau96I | GGNCC | 2 cut(s) | 700, 958 |
| SchI | GAGTC | 5 cut(s) | 139, 239, 391, 649, 735 |
| ScrFI | CCNGG | 2 cut(s) | 33, 750 |
| SduI | GDGCHC | 1 cut(s) | 650 |
| SfaNI | GCATC | 4 cut(s) | 367, 372, 685, 745 |
| SfcI | CTRYAG | 1 cut(s) | 455 |
| SfuI | TTCGAA | 1 cut(s) | 992 |
| SinI | GGWCC | 1 cut(s) | 700 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 140, 156, 578, 653, 708, 738, 1053 |
| SmlI | CTYRAG | 3 cut(s) | 16, 44, 167 |
| SmoI | CTYRAG | 3 cut(s) | 16, 44, 167 |
| Sse9I | AATT | 2 cut(s) | 353, 1039 |
| SseBI | AGGCCT | 1 cut(s) | 910 |
| SsiI | CCGC | 4 cut(s) | 6, 504, 698, 813 |
| SspMI | CTAG | 4 cut(s) | 51, 941, 962, 1061 |
| StuI | AGGCCT | 1 cut(s) | 910 |
| StyD4I | CCNGG | 2 cut(s) | 31, 748 |
| StyI | CCWWGG | 3 cut(s) | 23, 108, 717 |
| TaaI | ACNGT | 1 cut(s) | 70 |
| TaiI | ACGT | 3 cut(s) | 543, 886, 976 |
| TaqI | TCGA | 4 cut(s) | 219, 445, 666, 992 |
| TasI | AATT | 2 cut(s) | 353, 1039 |
| TfiI | GAWTC | 3 cut(s) | 40, 161, 989 |
| Tru1I | TTAA | 6 cut(s) | 17, 339, 435, 620, 630, 1066 |
| Tru9I | TTAA | 6 cut(s) | 17, 339, 435, 620, 630, 1066 |
| TscAI | CASTG | 1 cut(s) | 379 |
| TseFI | GTSAC | 2 cut(s) | 242, 820 |
| TseI | GCWGC | 3 cut(s) | 104, 457, 758 |
| Tsp45I | GTSAC | 2 cut(s) | 242, 820 |
| TspDTI | ATGAA | 3 cut(s) | 140, 201, 1032 |
| TspGWI | ACGGA | 2 cut(s) | 230, 477 |
| TspRI | CASTG | 1 cut(s) | 379 |
| Vha464I | CTTAAG | 1 cut(s) | 16 |
| VpaK11BI | GGWCC | 1 cut(s) | 700 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 876 |
| XapI | RAATTY | 2 cut(s) | 353, 1039 |
| XbaI | TCTAGA | 1 cut(s) | 1060 |
| XceI | RCATGY | 1 cut(s) | 853 |
| XmiI | GTMKAC | 1 cut(s) | 315 |
| XmnI | GAANNNNTTC | 1 cut(s) | 330 |
| XspI | CTAG | 4 cut(s) | 51, 941, 962, 1061 |