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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 485 |
| AccB1I | GGYRCC | 1 cut(s) | 485 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 668 |
| AccII | CGCG | 1 cut(s) | 560 |
| AciI | CCGC | 2 cut(s) | 159, 277 |
| AclWI | GGATC | 4 cut(s) | 97, 109, 110, 653 |
| AcsI | RAATTY | 1 cut(s) | 344 |
| AfaI | GTAC | 4 cut(s) | 112, 300, 487, 563 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 178, 668 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 558 |
| AgsI | TTSAA | 4 cut(s) | 167, 292, 641, 649 |
| AluBI | AGCT | 4 cut(s) | 24, 155, 478, 500 |
| AluI | AGCT | 4 cut(s) | 24, 155, 478, 500 |
| Alw26I | GTCTC | 1 cut(s) | 32 |
| AlwI | GGATC | 4 cut(s) | 97, 109, 110, 653 |
| Ama87I | CYCGRG | 1 cut(s) | 209 |
| AoxI | GGCC | 1 cut(s) | 652 |
| ApeKI | GCWGC | 2 cut(s) | 155, 214 |
| ApoI | RAATTY | 1 cut(s) | 344 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 321 |
| Asp718I | GGTACC | 1 cut(s) | 485 |
| AspLEI | GCGC | 1 cut(s) | 50 |
| AsuHPI | GGTGA | 1 cut(s) | 683 |
| AvaI | CYCGRG | 1 cut(s) | 209 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| BanI | GGYRCC | 1 cut(s) | 485 |
| BbsI | GAAGAC | 3 cut(s) | 189, 392, 648 |
| BbvI | GCAGC | 2 cut(s) | 142, 226 |
| BccI | CCATC | 3 cut(s) | 92, 258, 334 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 593, 627 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 1 cut(s) | 32 |
| BfaI | CTAG | 2 cut(s) | 35, 453 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 3 cut(s) | 156, 159, 215 |
| BlsI | GCNGC | 3 cut(s) | 157, 160, 216 |
| BmeT110I | CYCGRG | 1 cut(s) | 209 |
| BmiI | GGNNCC | 2 cut(s) | 104, 487 |
| BmsI | GCATC | 3 cut(s) | 88, 94, 468 |
| BpiI | GAAGAC | 3 cut(s) | 189, 392, 648 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BsaBI | GATNNNNATC | 3 cut(s) | 78, 377, 621 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 178, 668 |
| Bse8I | GATNNNNATC | 3 cut(s) | 78, 377, 621 |
| BseJI | GATNNNNATC | 3 cut(s) | 78, 377, 621 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 178, 668 |
| BseRI | GAGGAG | 1 cut(s) | 135 |
| BseXI | GCAGC | 2 cut(s) | 142, 226 |
| Bsh1236I | CGCG | 1 cut(s) | 560 |
| BshFI | GGCC | 1 cut(s) | 654 |
| BshNI | GGYRCC | 1 cut(s) | 485 |
| BsiHKCI | CYCGRG | 1 cut(s) | 209 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 178, 668 |
| BsmAI | GTCTC | 1 cut(s) | 32 |
| BsnI | GGCC | 1 cut(s) | 654 |
| BsoBI | CYCGRG | 1 cut(s) | 209 |
| Bsp143I | GATC | 6 cut(s) | 102, 114, 378, 610, 622, 658 |
| BspACI | CCGC | 2 cut(s) | 159, 277 |
| BspANI | GGCC | 1 cut(s) | 654 |
| BspFNI | CGCG | 1 cut(s) | 560 |
| BspHI | TCATGA | 2 cut(s) | 232, 472 |
| BspLI | GGNNCC | 2 cut(s) | 104, 487 |
| BspPI | GGATC | 4 cut(s) | 97, 109, 110, 653 |
| BspT107I | GGYRCC | 1 cut(s) | 485 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BssMI | GATC | 6 cut(s) | 102, 114, 378, 610, 622, 658 |
| Bst6I | CTCTTC | 1 cut(s) | 410 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstDEI | CTNAG | 2 cut(s) | 107, 632 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 176 |
| BstFNI | CGCG | 1 cut(s) | 560 |
| BstHHI | GCGC | 1 cut(s) | 50 |
| BstKTI | GATC | 6 cut(s) | 105, 117, 381, 613, 625, 661 |
| BstMAI | GTCTC | 1 cut(s) | 32 |
| BstMBI | GATC | 6 cut(s) | 102, 114, 378, 610, 622, 658 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 587 |
| BstUI | CGCG | 1 cut(s) | 560 |
| BstV1I | GCAGC | 2 cut(s) | 142, 226 |
| BstV2I | GAAGAC | 3 cut(s) | 189, 392, 648 |
| BstX2I | RGATCY | 2 cut(s) | 102, 658 |
| BstYI | RGATCY | 2 cut(s) | 102, 658 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 654 |
| BtsIMutI | CAGTG | 1 cut(s) | 363 |
| CciI | TCATGA | 2 cut(s) | 232, 472 |
| CfoI | GCGC | 1 cut(s) | 50 |
| CseI | GACGC | 1 cut(s) | 465 |
| Csp6I | GTAC | 4 cut(s) | 111, 299, 486, 562 |
| CviAII | CATG | 4 cut(s) | 233, 473, 490, 598 |
| CviJI | RGCY | 9 cut(s) | 24, 95, 124, 155, 273, 425, 478, 500, 654 |
| CviKI_1 | RGCY | 9 cut(s) | 24, 95, 124, 155, 273, 425, 478, 500, 654 |
| CviQI | GTAC | 4 cut(s) | 111, 299, 486, 562 |
| DdeI | CTNAG | 2 cut(s) | 107, 632 |
| DpnI | GATC | 6 cut(s) | 104, 116, 380, 612, 624, 660 |
| DpnII | GATC | 6 cut(s) | 102, 114, 378, 610, 622, 658 |
| Eam1104I | CTCTTC | 1 cut(s) | 410 |
| EarI | CTCTTC | 1 cut(s) | 410 |
| Eco88I | CYCGRG | 1 cut(s) | 209 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 176 |
| EcoRI | GAATTC | 1 cut(s) | 344 |
| FaeI | CATG | 4 cut(s) | 236, 476, 493, 601 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 4 cut(s) | 232, 472, 489, 597 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 159, 215 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 159, 215 |
| FspBI | CTAG | 2 cut(s) | 35, 453 |
| GlaI | GCGC | 1 cut(s) | 49 |
| GluI | GCNGC | 3 cut(s) | 156, 159, 215 |
| HaeIII | GGCC | 1 cut(s) | 654 |
| HgaI | GACGC | 1 cut(s) | 465 |
| HhaI | GCGC | 1 cut(s) | 50 |
| Hin1II | CATG | 4 cut(s) | 236, 476, 493, 601 |
| Hin6I | GCGC | 1 cut(s) | 48 |
| HinP1I | GCGC | 1 cut(s) | 48 |
| HinfI | GANTC | 2 cut(s) | 236, 388 |
| HphI | GGTGA | 1 cut(s) | 683 |
| Hpy188I | TCNGA | 2 cut(s) | 132, 438 |
| Hpy188III | TCNNGA | 7 cut(s) | 233, 248, 382, 473, 575, 614, 662 |
| HpyAV | CCTTC | 1 cut(s) | 409 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 569 |
| HpyCH4V | TGCA | 2 cut(s) | 79, 413 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 587 |
| HpyF3I | CTNAG | 2 cut(s) | 107, 632 |
| HpySE526I | ACGT | 2 cut(s) | 135, 569 |
| Hsp92II | CATG | 4 cut(s) | 236, 476, 493, 601 |
| HspAI | GCGC | 1 cut(s) | 48 |
| KpnI | GGTACC | 1 cut(s) | 489 |
| Kzo9I | GATC | 6 cut(s) | 102, 114, 378, 610, 622, 658 |
| LmnI | GCTCC | 1 cut(s) | 601 |
| LpnPI | CCDG | 5 cut(s) | 23, 36, 254, 261, 675 |
| Lsp1109I | GCAGC | 2 cut(s) | 142, 226 |
| LweI | GCATC | 3 cut(s) | 88, 94, 468 |
| MaeI | CTAG | 2 cut(s) | 35, 453 |
| MaeII | ACGT | 2 cut(s) | 135, 569 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 6 cut(s) | 104, 116, 380, 612, 624, 660 |
| MboI | GATC | 6 cut(s) | 102, 114, 378, 610, 622, 658 |
| MboII | GAAGA | 6 cut(s) | 194, 397, 397, 538, 620, 653 |
| MflI | RGATCY | 2 cut(s) | 102, 658 |
| MluCI | AATT | 3 cut(s) | 310, 344, 592 |
| MluI | ACGCGT | 1 cut(s) | 558 |
| MlyI | GAGTC | 2 cut(s) | 230, 382 |
| MnlI | CCTC | 5 cut(s) | 156, 172, 182, 284, 413 |
| MroXI | GAANNNNTTC | 1 cut(s) | 321 |
| MseI | TTAA | 2 cut(s) | 90, 682 |
| MslI | CAYNNNNRTG | 1 cut(s) | 521 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MvnI | CGCG | 1 cut(s) | 560 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 587 |
| NdeII | GATC | 6 cut(s) | 102, 114, 378, 610, 622, 658 |
| NlaIII | CATG | 4 cut(s) | 236, 476, 493, 601 |
| NlaIV | GGNNCC | 2 cut(s) | 104, 487 |
| PaeR7I | CTCGAG | 1 cut(s) | 209 |
| PagI | TCATGA | 2 cut(s) | 232, 472 |
| PdmI | GAANNNNTTC | 1 cut(s) | 321 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 668 |
| PkrI | GCNGC | 3 cut(s) | 157, 160, 216 |
| PleI | GAGTC | 2 cut(s) | 230, 382 |
| PpsI | GAGTC | 2 cut(s) | 230, 382 |
| PspN4I | GGNNCC | 2 cut(s) | 104, 487 |
| PspXI | VCTCGAGB | 1 cut(s) | 209 |
| PsuI | RGATCY | 2 cut(s) | 102, 658 |
| RsaI | GTAC | 4 cut(s) | 112, 300, 487, 563 |
| RsaNI | GTAC | 4 cut(s) | 111, 299, 486, 562 |
| RseI | CAYNNNNRTG | 1 cut(s) | 521 |
| SaqAI | TTAA | 2 cut(s) | 90, 682 |
| SatI | GCNGC | 3 cut(s) | 156, 159, 215 |
| Sau3AI | GATC | 6 cut(s) | 102, 114, 378, 610, 622, 658 |
| SchI | GAGTC | 2 cut(s) | 230, 382 |
| SetI | ASST | 9 cut(s) | 12, 26, 138, 157, 174, 401, 480, 502, 572 |
| SfaNI | GCATC | 3 cut(s) | 88, 94, 468 |
| Sfr274I | CTCGAG | 1 cut(s) | 209 |
| SlaI | CTCGAG | 1 cut(s) | 209 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 521 |
| SmlI | CTYRAG | 2 cut(s) | 89, 209 |
| SmoI | CTYRAG | 2 cut(s) | 89, 209 |
| Sse9I | AATT | 3 cut(s) | 310, 344, 592 |
| SsiI | CCGC | 2 cut(s) | 159, 277 |
| SspMI | CTAG | 2 cut(s) | 35, 453 |
| TaiI | ACGT | 2 cut(s) | 138, 572 |
| TaqI | TCGA | 3 cut(s) | 210, 381, 613 |
| TasI | AATT | 3 cut(s) | 310, 344, 592 |
| TatI | WGTACW | 1 cut(s) | 298 |
| TauI | GCSGC | 1 cut(s) | 161 |
| Tru1I | TTAA | 2 cut(s) | 90, 682 |
| Tru9I | TTAA | 2 cut(s) | 90, 682 |
| TscAI | CASTG | 1 cut(s) | 370 |
| TseI | GCWGC | 2 cut(s) | 155, 214 |
| TspDTI | ATGAA | 3 cut(s) | 221, 461, 506 |
| TspRI | CASTG | 1 cut(s) | 370 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 668 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 176 |
| XapI | RAATTY | 1 cut(s) | 344 |
| XhoI | CTCGAG | 1 cut(s) | 209 |
| XmnI | GAANNNNTTC | 1 cut(s) | 321 |
| XspI | CTAG | 2 cut(s) | 35, 453 |