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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 353 |
| AccIII | TCCGGA | 1 cut(s) | 433 |
| AclI | AACGTT | 2 cut(s) | 85, 96 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AfaI | GTAC | 1 cut(s) | 38 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 464 |
| AgsI | TTSAA | 1 cut(s) | 160 |
| AjiI | CACGTC | 1 cut(s) | 22 |
| AluBI | AGCT | 3 cut(s) | 147, 346, 368 |
| AluI | AGCT | 3 cut(s) | 147, 346, 368 |
| Alw21I | GWGCWC | 1 cut(s) | 27 |
| Alw26I | GTCTC | 2 cut(s) | 146, 280 |
| Ama87I | CYCGRG | 1 cut(s) | 77 |
| Aor13HI | TCCGGA | 1 cut(s) | 433 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| AseI | ATTAAT | 1 cut(s) | 309 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 2 cut(s) | 455, 471 |
| AvaI | CYCGRG | 1 cut(s) | 77 |
| AxyI | CCTNAGG | 1 cut(s) | 459 |
| BanI | GGYRCC | 1 cut(s) | 353 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 27 |
| BccI | CCATC | 3 cut(s) | 126, 202, 280 |
| BcoDI | GTCTC | 2 cut(s) | 146, 280 |
| BfaI | CTAG | 2 cut(s) | 408, 472 |
| BfmI | CTRYAG | 1 cut(s) | 445 |
| BfoI | RGCGCY | 1 cut(s) | 472 |
| BmeT110I | CYCGRG | 1 cut(s) | 77 |
| BmgBI | CACGTC | 1 cut(s) | 22 |
| BmiI | GGNNCC | 1 cut(s) | 355 |
| BmsI | GCATC | 2 cut(s) | 314, 336 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BsaBI | GATNNNNATC | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| BsaWI | WCCGGW | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 464 |
| Bse21I | CCTNAGG | 1 cut(s) | 459 |
| Bse8I | GATNNNNATC | 1 cut(s) | 245 |
| BseAI | TCCGGA | 1 cut(s) | 433 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 1 cut(s) | 329 |
| BseJI | GATNNNNATC | 1 cut(s) | 245 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 464 |
| BseMII | CTCAG | 1 cut(s) | 157 |
| BshNI | GGYRCC | 1 cut(s) | 353 |
| BsiHKAI | GWGCWC | 1 cut(s) | 27 |
| BsiHKCI | CYCGRG | 1 cut(s) | 77 |
| BsiSI | CCGG | 2 cut(s) | 321, 434 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 464 |
| BsmAI | GTCTC | 2 cut(s) | 146, 280 |
| BsoBI | CYCGRG | 1 cut(s) | 77 |
| Bsp1286I | GDGCHC | 1 cut(s) | 27 |
| Bsp13I | TCCGGA | 1 cut(s) | 433 |
| Bsp143I | GATC | 1 cut(s) | 246 |
| BspCNI | CTCAG | 1 cut(s) | 156 |
| BspEI | TCCGGA | 1 cut(s) | 433 |
| BspHI | TCATGA | 2 cut(s) | 100, 340 |
| BspLI | GGNNCC | 1 cut(s) | 355 |
| BspT107I | GGYRCC | 1 cut(s) | 353 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 1 cut(s) | 246 |
| BstDEI | CTNAG | 2 cut(s) | 143, 459 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 44, 462 |
| BstF5I | GGATG | 1 cut(s) | 329 |
| BstH2I | RGCGCY | 1 cut(s) | 472 |
| BstHHI | GCGC | 2 cut(s) | 455, 471 |
| BstKTI | GATC | 1 cut(s) | 249 |
| BstMAI | GTCTC | 2 cut(s) | 146, 280 |
| BstMBI | GATC | 1 cut(s) | 246 |
| BstSFI | CTRYAG | 1 cut(s) | 445 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| Bsu36I | CCTNAGG | 1 cut(s) | 459 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtrI | CACGTC | 1 cut(s) | 22 |
| BtsCI | GGATG | 1 cut(s) | 329 |
| CciI | TCATGA | 2 cut(s) | 100, 340 |
| CfoI | GCGC | 2 cut(s) | 455, 471 |
| Csp6I | GTAC | 1 cut(s) | 37 |
| CviAII | CATG | 4 cut(s) | 13, 101, 341, 358 |
| CviJI | RGCY | 5 cut(s) | 147, 293, 346, 368, 427 |
| CviKI_1 | RGCY | 5 cut(s) | 147, 293, 346, 368, 427 |
| CviQI | GTAC | 1 cut(s) | 37 |
| DdeI | CTNAG | 2 cut(s) | 143, 459 |
| DpnI | GATC | 1 cut(s) | 248 |
| DpnII | GATC | 1 cut(s) | 246 |
| Eco81I | CCTNAGG | 1 cut(s) | 459 |
| Eco88I | CYCGRG | 1 cut(s) | 77 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 44, 462 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoT22I | ATGCAT | 1 cut(s) | 329 |
| FaeI | CATG | 4 cut(s) | 16, 104, 344, 361 |
| FatI | CATG | 4 cut(s) | 12, 100, 340, 357 |
| FokI | GGATG | 1 cut(s) | 336 |
| FspBI | CTAG | 2 cut(s) | 408, 472 |
| GlaI | GCGC | 2 cut(s) | 454, 470 |
| HaeII | RGCGCY | 1 cut(s) | 472 |
| HapII | CCGG | 2 cut(s) | 321, 434 |
| HhaI | GCGC | 2 cut(s) | 455, 471 |
| Hin1II | CATG | 4 cut(s) | 16, 104, 344, 361 |
| Hin6I | GCGC | 2 cut(s) | 453, 469 |
| HinP1I | GCGC | 2 cut(s) | 453, 469 |
| HinfI | GANTC | 3 cut(s) | 104, 256, 437 |
| HpaII | CCGG | 2 cut(s) | 321, 434 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 306 |
| Hpy188III | TCNNGA | 6 cut(s) | 101, 116, 250, 341, 408, 434 |
| HpyAV | CCTTC | 2 cut(s) | 277, 458 |
| HpyCH4IV | ACGT | 3 cut(s) | 21, 85, 96 |
| HpyCH4V | TGCA | 2 cut(s) | 281, 327 |
| HpyF3I | CTNAG | 2 cut(s) | 143, 459 |
| HpySE526I | ACGT | 3 cut(s) | 21, 85, 96 |
| Hsp92II | CATG | 4 cut(s) | 16, 104, 344, 361 |
| HspAI | GCGC | 2 cut(s) | 453, 469 |
| Kpn2I | TCCGGA | 1 cut(s) | 433 |
| Kzo9I | GATC | 1 cut(s) | 246 |
| LmnI | GCTCC | 1 cut(s) | 30 |
| LpnPI | CCDG | 6 cut(s) | 70, 122, 129, 285, 334, 447 |
| LweI | GCATC | 2 cut(s) | 314, 336 |
| MaeI | CTAG | 2 cut(s) | 408, 472 |
| MaeII | ACGT | 3 cut(s) | 21, 85, 96 |
| MalI | GATC | 1 cut(s) | 248 |
| MboI | GATC | 1 cut(s) | 246 |
| MboII | GAAGA | 3 cut(s) | 62, 265, 406 |
| MhlI | GDGCHC | 1 cut(s) | 27 |
| MluCI | AATT | 3 cut(s) | 178, 212, 429 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 446 |
| MnlI | CCTC | 2 cut(s) | 40, 50 |
| Mph1103I | ATGCAT | 1 cut(s) | 329 |
| MroI | TCCGGA | 1 cut(s) | 433 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 1 cut(s) | 309 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| MspI | CCGG | 2 cut(s) | 321, 434 |
| NdeII | GATC | 1 cut(s) | 246 |
| NlaIII | CATG | 4 cut(s) | 16, 104, 344, 361 |
| NlaIV | GGNNCC | 1 cut(s) | 355 |
| NsiI | ATGCAT | 1 cut(s) | 329 |
| PaeR7I | CTCGAG | 1 cut(s) | 77 |
| PagI | TCATGA | 2 cut(s) | 100, 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 445 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 445 |
| PshBI | ATTAAT | 1 cut(s) | 309 |
| Psp1406I | AACGTT | 2 cut(s) | 85, 96 |
| PspN4I | GGNNCC | 1 cut(s) | 355 |
| PspXI | VCTCGAGB | 1 cut(s) | 77 |
| RsaI | GTAC | 1 cut(s) | 38 |
| RsaNI | GTAC | 1 cut(s) | 37 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| SaqAI | TTAA | 1 cut(s) | 309 |
| Sau3AI | GATC | 1 cut(s) | 246 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 446 |
| SduI | GDGCHC | 1 cut(s) | 27 |
| SetI | ASST | 8 cut(s) | 24, 42, 88, 99, 149, 269, 348, 370 |
| SfaNI | GCATC | 2 cut(s) | 314, 336 |
| SfcI | CTRYAG | 1 cut(s) | 445 |
| Sfr274I | CTCGAG | 1 cut(s) | 77 |
| SlaI | CTCGAG | 1 cut(s) | 77 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 389 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 3 cut(s) | 178, 212, 429 |
| SspMI | CTAG | 2 cut(s) | 408, 472 |
| TaiI | ACGT | 3 cut(s) | 24, 88, 99 |
| TaqI | TCGA | 2 cut(s) | 78, 249 |
| TasI | AATT | 3 cut(s) | 178, 212, 429 |
| Tru1I | TTAA | 1 cut(s) | 309 |
| Tru9I | TTAA | 1 cut(s) | 309 |
| TspDTI | ATGAA | 5 cut(s) | 29, 89, 182, 329, 374 |
| VspI | ATTAAT | 1 cut(s) | 309 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 44, 462 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XbaI | TCTAGA | 1 cut(s) | 407 |
| XhoI | CTCGAG | 1 cut(s) | 77 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 408, 472 |
| Zsp2I | ATGCAT | 1 cut(s) | 329 |