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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 526 |
| AciI | CCGC | 2 cut(s) | 365, 668 |
| AclWI | GGATC | 1 cut(s) | 335 |
| AcoI | YGGCCR | 1 cut(s) | 447 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AcyI | GRCGYC | 1 cut(s) | 527 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 539 |
| AgsI | TTSAA | 2 cut(s) | 160, 564 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AleI | CACNNNNGTG | 1 cut(s) | 236 |
| AluBI | AGCT | 4 cut(s) | 346, 356, 649, 700 |
| AluI | AGCT | 4 cut(s) | 346, 356, 649, 700 |
| Alw21I | GWGCWC | 3 cut(s) | 348, 593, 651 |
| Alw26I | GTCTC | 2 cut(s) | 76, 280 |
| AlwI | GGATC | 1 cut(s) | 335 |
| AoxI | GGCC | 1 cut(s) | 447 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 2 cut(s) | 529, 570 |
| AsuHPI | GGTGA | 2 cut(s) | 454, 657 |
| BanI | GGYRCC | 1 cut(s) | 526 |
| BanII | GRGCYC | 2 cut(s) | 348, 651 |
| BbsI | GAAGAC | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 3 cut(s) | 348, 593, 651 |
| BccI | CCATC | 4 cut(s) | 126, 202, 318, 554 |
| BceAI | ACGGC | 1 cut(s) | 462 |
| BcoDI | GTCTC | 2 cut(s) | 76, 280 |
| BfaI | CTAG | 5 cut(s) | 122, 392, 539, 623, 736 |
| BfmI | CTRYAG | 1 cut(s) | 318 |
| BfoI | RGCGCY | 2 cut(s) | 530, 571 |
| BmiI | GGNNCC | 3 cut(s) | 469, 528, 544 |
| BpiI | GAAGAC | 1 cut(s) | 57 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BsaHI | GRCGYC | 1 cut(s) | 527 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 539 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| Bse3DI | GCAATG | 2 cut(s) | 100, 522 |
| BseGI | GGATG | 2 cut(s) | 329, 546 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 539 |
| BseMI | GCAATG | 2 cut(s) | 100, 522 |
| BseMII | CTCAG | 1 cut(s) | 578 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BshFI | GGCC | 1 cut(s) | 449 |
| BshNI | GGYRCC | 1 cut(s) | 526 |
| BsiHKAI | GWGCWC | 3 cut(s) | 348, 593, 651 |
| BsiSI | CCGG | 1 cut(s) | 512 |
| BslFI | GGGAC | 1 cut(s) | 409 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 539 |
| BsmAI | GTCTC | 2 cut(s) | 76, 280 |
| BsmFI | GGGAC | 1 cut(s) | 409 |
| BsmI | GAATGC | 1 cut(s) | 367 |
| BsnI | GGCC | 1 cut(s) | 449 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 3 cut(s) | 348, 593, 651 |
| Bsp143I | GATC | 2 cut(s) | 327, 720 |
| BspACI | CCGC | 2 cut(s) | 365, 668 |
| BspANI | GGCC | 1 cut(s) | 449 |
| BspCNI | CTCAG | 1 cut(s) | 579 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 3 cut(s) | 469, 528, 544 |
| BspPI | GGATC | 1 cut(s) | 335 |
| BspT107I | GGYRCC | 1 cut(s) | 526 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrDI | GCAATG | 2 cut(s) | 100, 522 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssMI | GATC | 2 cut(s) | 327, 720 |
| BssNI | GRCGYC | 1 cut(s) | 527 |
| Bst4CI | ACNGT | 1 cut(s) | 319 |
| Bst6I | CTCTTC | 1 cut(s) | 468 |
| BstACI | GRCGYC | 1 cut(s) | 527 |
| BstDEI | CTNAG | 3 cut(s) | 294, 372, 587 |
| BstF5I | GGATG | 2 cut(s) | 329, 546 |
| BstH2I | RGCGCY | 2 cut(s) | 530, 571 |
| BstHHI | GCGC | 2 cut(s) | 529, 570 |
| BstKTI | GATC | 2 cut(s) | 330, 723 |
| BstMAI | GTCTC | 2 cut(s) | 76, 280 |
| BstMBI | GATC | 2 cut(s) | 327, 720 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 362, 676, 697 |
| BstSFI | CTRYAG | 1 cut(s) | 318 |
| BstV2I | GAAGAC | 1 cut(s) | 57 |
| BsuRI | GGCC | 1 cut(s) | 449 |
| BtsCI | GGATG | 2 cut(s) | 329, 546 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 2 cut(s) | 529, 570 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 504, 539 |
| CviAII | CATG | 2 cut(s) | 333, 341 |
| CviJI | RGCY | 7 cut(s) | 141, 346, 356, 449, 545, 649, 700 |
| CviKI_1 | RGCY | 7 cut(s) | 141, 346, 356, 449, 545, 649, 700 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 3 cut(s) | 294, 372, 587 |
| DinI | GGCGCC | 1 cut(s) | 528 |
| DpnI | GATC | 2 cut(s) | 329, 722 |
| DpnII | GATC | 2 cut(s) | 327, 720 |
| EaeI | YGGCCR | 1 cut(s) | 447 |
| Eam1104I | CTCTTC | 1 cut(s) | 468 |
| EarI | CTCTTC | 1 cut(s) | 468 |
| Ecl136II | GAGCTC | 2 cut(s) | 346, 649 |
| Eco24I | GRGCYC | 2 cut(s) | 348, 651 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco32I | GATATC | 1 cut(s) | 229 |
| Eco53kI | GAGCTC | 2 cut(s) | 346, 649 |
| EcoICRI | GAGCTC | 2 cut(s) | 346, 649 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoRV | GATATC | 1 cut(s) | 229 |
| EcoT38I | GRGCYC | 2 cut(s) | 348, 651 |
| EgeI | GGCGCC | 1 cut(s) | 528 |
| EheI | GGCGCC | 1 cut(s) | 528 |
| FaeI | CATG | 2 cut(s) | 336, 344 |
| FaqI | GGGAC | 1 cut(s) | 409 |
| FatI | CATG | 2 cut(s) | 332, 340 |
| FauI | CCCGC | 1 cut(s) | 358 |
| FokI | GGATG | 2 cut(s) | 336, 533 |
| FriOI | GRGCYC | 2 cut(s) | 348, 651 |
| FspBI | CTAG | 5 cut(s) | 122, 392, 539, 623, 736 |
| GlaI | GCGC | 2 cut(s) | 528, 569 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 2 cut(s) | 530, 571 |
| HaeIII | GGCC | 1 cut(s) | 449 |
| HapII | CCGG | 1 cut(s) | 512 |
| HhaI | GCGC | 2 cut(s) | 529, 570 |
| Hin1I | GRCGYC | 1 cut(s) | 527 |
| Hin1II | CATG | 2 cut(s) | 336, 344 |
| Hin6I | GCGC | 2 cut(s) | 527, 568 |
| HinP1I | GCGC | 2 cut(s) | 527, 568 |
| HinfI | GANTC | 3 cut(s) | 20, 306, 583 |
| HpaII | CCGG | 1 cut(s) | 512 |
| HphI | GGTGA | 2 cut(s) | 454, 657 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 588 |
| Hpy188III | TCNNGA | 5 cut(s) | 116, 341, 404, 608, 724 |
| HpyAV | CCTTC | 2 cut(s) | 54, 433 |
| HpyCH4III | ACNGT | 1 cut(s) | 319 |
| HpyCH4IV | ACGT | 2 cut(s) | 408, 557 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 362, 676, 697 |
| HpyF3I | CTNAG | 3 cut(s) | 294, 372, 587 |
| HpySE526I | ACGT | 2 cut(s) | 408, 557 |
| Hsp92I | GRCGYC | 1 cut(s) | 527 |
| Hsp92II | CATG | 2 cut(s) | 336, 344 |
| HspAI | GCGC | 2 cut(s) | 527, 568 |
| KasI | GGCGCC | 1 cut(s) | 526 |
| Kzo9I | GATC | 2 cut(s) | 327, 720 |
| LmnI | GCTCC | 3 cut(s) | 30, 353, 542 |
| LpnPI | CCDG | 8 cut(s) | 41, 70, 122, 129, 285, 389, 525, 621 |
| MaeI | CTAG | 5 cut(s) | 122, 392, 539, 623, 736 |
| MaeII | ACGT | 2 cut(s) | 408, 557 |
| MaeIII | GTNAC | 3 cut(s) | 101, 313, 442 |
| MalI | GATC | 2 cut(s) | 329, 722 |
| MboI | GATC | 2 cut(s) | 327, 720 |
| MboII | GAAGA | 4 cut(s) | 59, 62, 485, 730 |
| MhlI | GDGCHC | 3 cut(s) | 348, 593, 651 |
| MluCI | AATT | 1 cut(s) | 212 |
| Mly113I | GGCGCC | 1 cut(s) | 527 |
| MlyI | GAGTC | 1 cut(s) | 592 |
| MnlI | CCTC | 6 cut(s) | 152, 469, 489, 493, 519, 581 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 3 cut(s) | 171, 198, 284 |
| MslI | CAYNNNNRTG | 3 cut(s) | 236, 551, 596 |
| MspI | CCGG | 1 cut(s) | 512 |
| Mva1269I | GAATGC | 1 cut(s) | 367 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 362, 676, 697 |
| NarI | GGCGCC | 1 cut(s) | 527 |
| NdeII | GATC | 2 cut(s) | 327, 720 |
| NlaIII | CATG | 2 cut(s) | 336, 344 |
| NlaIV | GGNNCC | 3 cut(s) | 469, 528, 544 |
| NmuCI | GTSAC | 1 cut(s) | 442 |
| OliI | CACNNNNGTG | 1 cut(s) | 236 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PctI | GAATGC | 1 cut(s) | 367 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 2 cut(s) | 20, 306 |
| PleI | GAGTC | 1 cut(s) | 591 |
| PluTI | GGCGCC | 1 cut(s) | 530 |
| PpsI | GAGTC | 1 cut(s) | 591 |
| Psp124BI | GAGCTC | 2 cut(s) | 348, 651 |
| PspN4I | GGNNCC | 3 cut(s) | 469, 528, 544 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 3 cut(s) | 236, 551, 596 |
| SacI | GAGCTC | 2 cut(s) | 348, 651 |
| SaqAI | TTAA | 3 cut(s) | 171, 198, 284 |
| Sau3AI | GATC | 2 cut(s) | 327, 720 |
| SchI | GAGTC | 1 cut(s) | 592 |
| SduI | GDGCHC | 3 cut(s) | 348, 593, 651 |
| SfcI | CTRYAG | 1 cut(s) | 318 |
| SfoI | GGCGCC | 1 cut(s) | 528 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 236, 551, 596 |
| Sse9I | AATT | 1 cut(s) | 212 |
| SsiI | CCGC | 2 cut(s) | 365, 668 |
| SspDI | GGCGCC | 1 cut(s) | 526 |
| SspMI | CTAG | 5 cut(s) | 122, 392, 539, 623, 736 |
| SstI | GAGCTC | 2 cut(s) | 348, 651 |
| TaaI | ACNGT | 1 cut(s) | 319 |
| TaiI | ACGT | 2 cut(s) | 411, 560 |
| TaqI | TCGA | 2 cut(s) | 78, 304 |
| TasI | AATT | 1 cut(s) | 212 |
| TfiI | GAWTC | 2 cut(s) | 20, 306 |
| Tru1I | TTAA | 3 cut(s) | 171, 198, 284 |
| Tru9I | TTAA | 3 cut(s) | 171, 198, 284 |
| TseFI | GTSAC | 1 cut(s) | 442 |
| Tsp45I | GTSAC | 1 cut(s) | 442 |
| TspDTI | ATGAA | 5 cut(s) | 56, 60, 234, 329, 374 |
| TspGWI | ACGGA | 1 cut(s) | 480 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 5 cut(s) | 122, 392, 539, 623, 736 |