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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 618 |
| AccB1I | GGYRCC | 3 cut(s) | 573, 731, 834 |
| AccIII | TCCGGA | 1 cut(s) | 538 |
| AciI | CCGC | 2 cut(s) | 425, 846 |
| AclWI | GGATC | 3 cut(s) | 440, 1139, 1152 |
| AcoI | YGGCCR | 2 cut(s) | 718, 889 |
| AcyI | GRCGYC | 4 cut(s) | 574, 732, 835, 927 |
| AfeI | AGCGCT | 1 cut(s) | 1030 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 569, 831, 917 |
| AflIII | ACRYGT | 1 cut(s) | 24 |
| AgsI | TTSAA | 4 cut(s) | 185, 265, 458, 769 |
| AjiI | CACGTC | 1 cut(s) | 25 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 177, 209 |
| AluBI | AGCT | 4 cut(s) | 44, 50, 461, 532 |
| AluI | AGCT | 4 cut(s) | 44, 50, 461, 532 |
| Alw26I | GTCTC | 3 cut(s) | 181, 755, 1120 |
| AlwI | GGATC | 3 cut(s) | 440, 1139, 1152 |
| Ama87I | CYCGRG | 1 cut(s) | 8 |
| Aor13HI | TCCGGA | 1 cut(s) | 538 |
| Aor51HI | AGCGCT | 1 cut(s) | 1030 |
| AoxI | GGCC | 5 cut(s) | 718, 843, 889, 1044, 1077 |
| ApeKI | GCWGC | 1 cut(s) | 68 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspLEI | GCGC | 5 cut(s) | 576, 734, 837, 881, 1031 |
| AspS9I | GGNCC | 5 cut(s) | 843, 1045, 1078, 1121, 1131 |
| AsuHPI | GGTGA | 1 cut(s) | 1010 |
| AvaI | CYCGRG | 1 cut(s) | 8 |
| AvaII | GGWCC | 2 cut(s) | 1121, 1131 |
| BalI | TGGCCA | 2 cut(s) | 720, 891 |
| BamHI | GGATCC | 1 cut(s) | 1144 |
| BanI | GGYRCC | 3 cut(s) | 573, 731, 834 |
| BbsI | GAAGAC | 2 cut(s) | 162, 365 |
| BbvI | GCAGC | 1 cut(s) | 80 |
| BccI | CCATC | 6 cut(s) | 231, 385, 386, 759, 833, 988 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 404, 438 |
| BciVI | GTATCC | 1 cut(s) | 595 |
| BcoDI | GTCTC | 3 cut(s) | 181, 755, 1120 |
| BfaI | CTAG | 2 cut(s) | 15, 227 |
| BfmI | CTRYAG | 2 cut(s) | 519, 819 |
| BfoI | RGCGCY | 5 cut(s) | 577, 735, 838, 882, 1032 |
| BfuI | GTATCC | 1 cut(s) | 595 |
| BglII | AGATCT | 1 cut(s) | 515 |
| BisI | GCNGC | 2 cut(s) | 69, 846 |
| BlsI | GCNGC | 2 cut(s) | 70, 847 |
| Bme18I | GGWCC | 2 cut(s) | 1121, 1131 |
| BmeT110I | CYCGRG | 1 cut(s) | 8 |
| BmgBI | CACGTC | 1 cut(s) | 25 |
| BmgT120I | GGNCC | 5 cut(s) | 843, 1045, 1078, 1121, 1131 |
| BmiI | GGNNCC | 6 cut(s) | 575, 733, 836, 982, 1080, 1146 |
| BmsI | GCATC | 5 cut(s) | 793, 815, 886, 946, 955 |
| BpiI | GAAGAC | 2 cut(s) | 162, 365 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1041 |
| BpuEI | CTTGAG | 1 cut(s) | 30 |
| Bsa29I | ATCGAT | 1 cut(s) | 414 |
| BsaHI | GRCGYC | 4 cut(s) | 574, 732, 835, 927 |
| BsaI | GGTCTC | 1 cut(s) | 181 |
| BsaJI | CCNNGG | 7 cut(s) | 886, 900, 916, 930, 946, 960, 976 |
| BsaWI | WCCGGW | 1 cut(s) | 538 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 569, 831, 917 |
| BseAI | TCCGGA | 1 cut(s) | 538 |
| BseCI | ATCGAT | 1 cut(s) | 414 |
| BseDI | CCNNGG | 7 cut(s) | 886, 900, 916, 930, 946, 960, 976 |
| BseGI | GGATG | 5 cut(s) | 127, 489, 940, 970, 1055 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 569, 831, 917 |
| BseMII | CTCAG | 1 cut(s) | 1055 |
| BseXI | GCAGC | 1 cut(s) | 80 |
| BshFI | GGCC | 5 cut(s) | 720, 845, 891, 1046, 1079 |
| BshNI | GGYRCC | 3 cut(s) | 573, 731, 834 |
| BshVI | ATCGAT | 1 cut(s) | 414 |
| BsiHKCI | CYCGRG | 1 cut(s) | 8 |
| BsiSI | CCGG | 1 cut(s) | 539 |
| BslFI | GGGAC | 3 cut(s) | 441, 839, 893 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 569, 831, 917 |
| BsmAI | GTCTC | 3 cut(s) | 181, 755, 1120 |
| BsmBI | CGTCTC | 1 cut(s) | 1120 |
| BsmFI | GGGAC | 3 cut(s) | 441, 839, 893 |
| BsnI | GGCC | 5 cut(s) | 720, 845, 891, 1046, 1079 |
| Bso31I | GGTCTC | 1 cut(s) | 181 |
| BsoBI | CYCGRG | 1 cut(s) | 8 |
| Bsp13I | TCCGGA | 1 cut(s) | 538 |
| Bsp143I | GATC | 5 cut(s) | 333, 432, 515, 682, 1144 |
| Bsp19I | CCATGG | 5 cut(s) | 900, 916, 946, 960, 976 |
| BspACI | CCGC | 2 cut(s) | 425, 846 |
| BspANI | GGCC | 5 cut(s) | 720, 845, 891, 1046, 1079 |
| BspCNI | CTCAG | 1 cut(s) | 1054 |
| BspDI | ATCGAT | 1 cut(s) | 414 |
| BspEI | TCCGGA | 1 cut(s) | 538 |
| BspHI | TCATGA | 2 cut(s) | 445, 922 |
| BspLI | GGNNCC | 6 cut(s) | 575, 733, 836, 982, 1080, 1146 |
| BspPI | GGATC | 3 cut(s) | 440, 1139, 1152 |
| BspT107I | GGYRCC | 3 cut(s) | 573, 731, 834 |
| BspTNI | GGTCTC | 1 cut(s) | 181 |
| BssECI | CCNNGG | 7 cut(s) | 886, 900, 916, 930, 946, 960, 976 |
| BssMI | GATC | 5 cut(s) | 333, 432, 515, 682, 1144 |
| BssNI | GRCGYC | 4 cut(s) | 574, 732, 835, 927 |
| BssT1I | CCWWGG | 7 cut(s) | 886, 900, 916, 930, 946, 960, 976 |
| Bst4CI | ACNGT | 1 cut(s) | 1131 |
| Bst6I | CTCTTC | 1 cut(s) | 673 |
| BstACI | GRCGYC | 4 cut(s) | 574, 732, 835, 927 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1101 |
| BstC8I | GCNNGC | 2 cut(s) | 42, 1102 |
| BstDEI | CTNAG | 6 cut(s) | 73, 399, 596, 744, 1041, 1074 |
| BstDSI | CCRYGG | 5 cut(s) | 900, 916, 946, 960, 976 |
| BstEII | GGTNACC | 1 cut(s) | 647 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 567 |
| BstF5I | GGATG | 5 cut(s) | 127, 489, 940, 970, 1055 |
| BstH2I | RGCGCY | 5 cut(s) | 577, 735, 838, 882, 1032 |
| BstHHI | GCGC | 5 cut(s) | 576, 734, 837, 881, 1031 |
| BstKTI | GATC | 5 cut(s) | 336, 435, 518, 685, 1147 |
| BstMAI | GTCTC | 3 cut(s) | 181, 755, 1120 |
| BstMBI | GATC | 5 cut(s) | 333, 432, 515, 682, 1144 |
| BstPI | GGTNACC | 1 cut(s) | 647 |
| BstSFI | CTRYAG | 2 cut(s) | 519, 819 |
| BstV1I | GCAGC | 1 cut(s) | 80 |
| BstV2I | GAAGAC | 2 cut(s) | 162, 365 |
| BstX2I | RGATCY | 2 cut(s) | 515, 1144 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 728 |
| BstYI | RGATCY | 2 cut(s) | 515, 1144 |
| Bsu15I | ATCGAT | 1 cut(s) | 414 |
| BsuI | GTATCC | 1 cut(s) | 595 |
| BsuRI | GGCC | 5 cut(s) | 720, 845, 891, 1046, 1079 |
| BsuTUI | ATCGAT | 1 cut(s) | 414 |
| BtgI | CCRYGG | 5 cut(s) | 900, 916, 946, 960, 976 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtrI | CACGTC | 1 cut(s) | 25 |
| BtsCI | GGATG | 5 cut(s) | 127, 489, 940, 970, 1055 |
| Cac8I | GCNNGC | 2 cut(s) | 42, 1102 |
| CciI | TCATGA | 2 cut(s) | 445, 922 |
| CfoI | GCGC | 5 cut(s) | 576, 734, 837, 881, 1031 |
| Cfr13I | GGNCC | 5 cut(s) | 843, 1045, 1078, 1121, 1131 |
| ClaI | ATCGAT | 1 cut(s) | 414 |
| CseI | GACGC | 2 cut(s) | 935, 1046 |
| DdeI | CTNAG | 6 cut(s) | 73, 399, 596, 744, 1041, 1074 |
| DinI | GGCGCC | 3 cut(s) | 575, 733, 836 |
| DpnI | GATC | 5 cut(s) | 335, 434, 517, 684, 1146 |
| DpnII | GATC | 5 cut(s) | 333, 432, 515, 682, 1144 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 618 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 618 |
| EaeI | YGGCCR | 2 cut(s) | 718, 889 |
| Eam1104I | CTCTTC | 1 cut(s) | 673 |
| EarI | CTCTTC | 1 cut(s) | 673 |
| Eco130I | CCWWGG | 7 cut(s) | 886, 900, 916, 930, 946, 960, 976 |
| Eco31I | GGTCTC | 1 cut(s) | 181 |
| Eco47I | GGWCC | 2 cut(s) | 1121, 1131 |
| Eco47III | AGCGCT | 1 cut(s) | 1030 |
| Eco88I | CYCGRG | 1 cut(s) | 8 |
| Eco91I | GGTNACC | 1 cut(s) | 647 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 567 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1078 |
| EcoO65I | GGTNACC | 1 cut(s) | 647 |
| EcoT14I | CCWWGG | 7 cut(s) | 886, 900, 916, 930, 946, 960, 976 |
| EcoT22I | ATGCAT | 1 cut(s) | 808 |
| EgeI | GGCGCC | 3 cut(s) | 575, 733, 836 |
| EheI | GGCGCC | 3 cut(s) | 575, 733, 836 |
| ErhI | CCWWGG | 7 cut(s) | 886, 900, 916, 930, 946, 960, 976 |
| Esp3I | CGTCTC | 1 cut(s) | 1120 |
| FaqI | GGGAC | 3 cut(s) | 441, 839, 893 |
| FauI | CCCGC | 1 cut(s) | 418 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 2 cut(s) | 69, 846 |
| FokI | GGATG | 5 cut(s) | 134, 476, 947, 977, 1042 |
| Fsp4HI | GCNGC | 2 cut(s) | 69, 846 |
| FspBI | CTAG | 2 cut(s) | 15, 227 |
| GlaI | GCGC | 5 cut(s) | 575, 733, 836, 880, 1030 |
| GluI | GCNGC | 2 cut(s) | 69, 846 |
| HaeII | RGCGCY | 5 cut(s) | 577, 735, 838, 882, 1032 |
| HaeIII | GGCC | 5 cut(s) | 720, 845, 891, 1046, 1079 |
| HapII | CCGG | 1 cut(s) | 539 |
| HgaI | GACGC | 2 cut(s) | 935, 1046 |
| HhaI | GCGC | 5 cut(s) | 576, 734, 837, 881, 1031 |
| Hin1I | GRCGYC | 4 cut(s) | 574, 732, 835, 927 |
| Hin6I | GCGC | 5 cut(s) | 574, 732, 835, 879, 1029 |
| HinP1I | GCGC | 5 cut(s) | 574, 732, 835, 879, 1029 |
| HincII | GTYRAC | 1 cut(s) | 30 |
| HindII | GTYRAC | 1 cut(s) | 30 |
| HindIII | AAGCTT | 1 cut(s) | 48 |
| HpaI | GTTAAC | 1 cut(s) | 30 |
| HpaII | CCGG | 1 cut(s) | 539 |
| HphI | GGTGA | 1 cut(s) | 1010 |
| Hpy166II | GTNNAC | 2 cut(s) | 30, 1195 |
| Hpy188I | TCNGA | 2 cut(s) | 289, 793 |
| Hpy8I | GTNNAC | 2 cut(s) | 30, 1195 |
| HpyAV | CCTTC | 5 cut(s) | 159, 382, 638, 921, 1117 |
| HpyCH4III | ACNGT | 1 cut(s) | 1131 |
| HpyCH4IV | ACGT | 4 cut(s) | 24, 201, 613, 688 |
| HpyCH4V | TGCA | 3 cut(s) | 386, 806, 1095 |
| HpyF3I | CTNAG | 6 cut(s) | 73, 399, 596, 744, 1041, 1074 |
| HpySE526I | ACGT | 4 cut(s) | 24, 201, 613, 688 |
| Hsp92I | GRCGYC | 4 cut(s) | 574, 732, 835, 927 |
| HspAI | GCGC | 5 cut(s) | 574, 732, 835, 879, 1029 |
| KasI | GGCGCC | 3 cut(s) | 573, 731, 834 |
| Kpn2I | TCCGGA | 1 cut(s) | 538 |
| KspAI | GTTAAC | 1 cut(s) | 30 |
| Kzo9I | GATC | 5 cut(s) | 333, 432, 515, 682, 1144 |
| LmnI | GCTCC | 2 cut(s) | 135, 1109 |
| Lsp1109I | GCAGC | 1 cut(s) | 80 |
| LweI | GCATC | 5 cut(s) | 793, 815, 886, 946, 955 |
| MaeI | CTAG | 2 cut(s) | 15, 227 |
| MaeII | ACGT | 4 cut(s) | 24, 201, 613, 688 |
| MaeIII | GTNAC | 6 cut(s) | 206, 418, 554, 647, 860, 1006 |
| MalI | GATC | 5 cut(s) | 335, 434, 517, 684, 1146 |
| MboI | GATC | 5 cut(s) | 333, 432, 515, 682, 1144 |
| MboII | GAAGA | 6 cut(s) | 164, 167, 197, 370, 511, 690 |
| MflI | RGATCY | 2 cut(s) | 515, 1144 |
| MlsI | TGGCCA | 2 cut(s) | 720, 891 |
| MluCI | AATT | 3 cut(s) | 508, 547, 1115 |
| MluNI | TGGCCA | 2 cut(s) | 720, 891 |
| Mly113I | GGCGCC | 3 cut(s) | 574, 732, 835 |
| MlyI | GAGTC | 4 cut(s) | 103, 203, 355, 797 |
| MnlI | CCTC | 8 cut(s) | 257, 563, 694, 698, 724, 786, 1069, 1092 |
| Mox20I | TGGCCA | 2 cut(s) | 720, 891 |
| Mph1103I | ATGCAT | 1 cut(s) | 808 |
| MroI | TCCGGA | 1 cut(s) | 538 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MscI | TGGCCA | 2 cut(s) | 720, 891 |
| MseI | TTAA | 3 cut(s) | 29, 303, 311 |
| MslI | CAYNNNNRTG | 6 cut(s) | 120, 255, 494, 726, 756, 921 |
| Msp20I | TGGCCA | 2 cut(s) | 720, 891 |
| MspI | CCGG | 1 cut(s) | 539 |
| NarI | GGCGCC | 3 cut(s) | 574, 732, 835 |
| NcoI | CCATGG | 5 cut(s) | 900, 916, 946, 960, 976 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 5 cut(s) | 333, 432, 515, 682, 1144 |
| NlaIV | GGNNCC | 6 cut(s) | 575, 733, 836, 982, 1080, 1146 |
| NmuCI | GTSAC | 3 cut(s) | 206, 554, 1006 |
| NsiI | ATGCAT | 1 cut(s) | 808 |
| PaeR7I | CTCGAG | 1 cut(s) | 8 |
| PagI | TCATGA | 2 cut(s) | 445, 922 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PfeI | GAWTC | 6 cut(s) | 4, 125, 542, 938, 1176, 1187 |
| PkrI | GCNGC | 2 cut(s) | 70, 847 |
| PleI | GAGTC | 4 cut(s) | 103, 203, 355, 796 |
| PluTI | GGCGCC | 3 cut(s) | 577, 735, 838 |
| PpsI | GAGTC | 4 cut(s) | 103, 203, 355, 796 |
| PspEI | GGTNACC | 1 cut(s) | 647 |
| PspN4I | GGNNCC | 6 cut(s) | 575, 733, 836, 982, 1080, 1146 |
| PspPI | GGNCC | 5 cut(s) | 843, 1045, 1078, 1121, 1131 |
| PsuI | RGATCY | 2 cut(s) | 515, 1144 |
| RseI | CAYNNNNRTG | 6 cut(s) | 120, 255, 494, 726, 756, 921 |
| SaqAI | TTAA | 3 cut(s) | 29, 303, 311 |
| SatI | GCNGC | 2 cut(s) | 69, 846 |
| Sau3AI | GATC | 5 cut(s) | 333, 432, 515, 682, 1144 |
| Sau96I | GGNCC | 5 cut(s) | 843, 1045, 1078, 1121, 1131 |
| SchI | GAGTC | 4 cut(s) | 103, 203, 355, 797 |
| SfaNI | GCATC | 5 cut(s) | 793, 815, 886, 946, 955 |
| SfcI | CTRYAG | 2 cut(s) | 519, 819 |
| SfoI | GGCGCC | 3 cut(s) | 575, 733, 836 |
| Sfr274I | CTCGAG | 1 cut(s) | 8 |
| SinI | GGWCC | 2 cut(s) | 1121, 1131 |
| SlaI | CTCGAG | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 120, 255, 494, 726, 756, 921 |
| SmlI | CTYRAG | 2 cut(s) | 8, 45 |
| SmoI | CTYRAG | 2 cut(s) | 8, 45 |
| Sse9I | AATT | 3 cut(s) | 508, 547, 1115 |
| SsiI | CCGC | 2 cut(s) | 425, 846 |
| SspDI | GGCGCC | 3 cut(s) | 573, 731, 834 |
| SspMI | CTAG | 2 cut(s) | 15, 227 |
| StyI | CCWWGG | 7 cut(s) | 886, 900, 916, 930, 946, 960, 976 |
| TaaI | ACNGT | 1 cut(s) | 1131 |
| TaiI | ACGT | 4 cut(s) | 27, 204, 616, 691 |
| TaqI | TCGA | 3 cut(s) | 9, 414, 512 |
| TaqII | GACCGA | 1 cut(s) | 1138 |
| TasI | AATT | 3 cut(s) | 508, 547, 1115 |
| TauI | GCSGC | 1 cut(s) | 848 |
| TfiI | GAWTC | 6 cut(s) | 4, 125, 542, 938, 1176, 1187 |
| Tru1I | TTAA | 3 cut(s) | 29, 303, 311 |
| Tru9I | TTAA | 3 cut(s) | 29, 303, 311 |
| TseFI | GTSAC | 3 cut(s) | 206, 554, 1006 |
| TseI | GCWGC | 1 cut(s) | 68 |
| Tsp45I | GTSAC | 3 cut(s) | 206, 554, 1006 |
| TspDTI | ATGAA | 6 cut(s) | 161, 165, 434, 462, 479, 512 |
| TspGWI | ACGGA | 5 cut(s) | 194, 445, 690, 1049, 1169 |
| VpaK11BI | GGWCC | 2 cut(s) | 1121, 1131 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 567 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 991 |
| XhoI | CTCGAG | 1 cut(s) | 8 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 2 cut(s) | 15, 227 |
| Zsp2I | ATGCAT | 1 cut(s) | 808 |