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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 569 |
| AccII | CGCG | 1 cut(s) | 348 |
| AciI | CCGC | 5 cut(s) | 71, 499, 512, 663, 666 |
| AclWI | GGATC | 5 cut(s) | 185, 222, 229, 348, 369 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcuI | CTGAAG | 1 cut(s) | 140 |
| AcyI | GRCGYC | 1 cut(s) | 566 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 80, 239, 556 |
| AgsI | TTSAA | 1 cut(s) | 335 |
| AjnI | CCWGG | 1 cut(s) | 247 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 257, 289 |
| AluBI | AGCT | 1 cut(s) | 306 |
| AluI | AGCT | 1 cut(s) | 306 |
| Alw21I | GWGCWC | 1 cut(s) | 308 |
| Alw26I | GTCTC | 3 cut(s) | 630, 685, 817 |
| AlwI | GGATC | 5 cut(s) | 185, 222, 229, 348, 369 |
| AoxI | GGCC | 5 cut(s) | 3, 299, 480, 714, 723 |
| ApeKI | GCWGC | 2 cut(s) | 402, 621 |
| AspLEI | GCGC | 1 cut(s) | 348 |
| AspS9I | GGNCC | 2 cut(s) | 714, 723 |
| AsuNHI | GCTAGC | 1 cut(s) | 11 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 2 cut(s) | 308, 759 |
| BauI | CACGAG | 1 cut(s) | 516 |
| BbsI | GAAGAC | 1 cut(s) | 40 |
| Bbv12I | GWGCWC | 1 cut(s) | 308 |
| BbvI | GCAGC | 2 cut(s) | 389, 633 |
| BccI | CCATC | 4 cut(s) | 73, 260, 280, 482 |
| BceAI | ACGGC | 2 cut(s) | 328, 659 |
| BciT130I | CCWGG | 1 cut(s) | 249 |
| BcoDI | GTCTC | 3 cut(s) | 630, 685, 817 |
| BfaI | CTAG | 3 cut(s) | 12, 62, 570 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 722 |
| BglII | AGATCT | 1 cut(s) | 319 |
| BisI | GCNGC | 5 cut(s) | 403, 513, 622, 664, 667 |
| BlsI | GCNGC | 5 cut(s) | 404, 514, 623, 665, 668 |
| Bme1390I | CCNGG | 1 cut(s) | 249 |
| BmgT120I | GGNCC | 2 cut(s) | 714, 723 |
| BmiI | GGNNCC | 1 cut(s) | 245 |
| BmrFI | CCNGG | 1 cut(s) | 249 |
| BmrI | ACTGGG | 2 cut(s) | 592, 721 |
| BmtI | GCTAGC | 1 cut(s) | 15 |
| BmuI | ACTGGG | 2 cut(s) | 592, 721 |
| BpiI | GAAGAC | 1 cut(s) | 40 |
| BsaHI | GRCGYC | 1 cut(s) | 566 |
| BsaI | GGTCTC | 1 cut(s) | 817 |
| BsaJI | CCNNGG | 7 cut(s) | 74, 132, 233, 247, 248, 550, 726 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 80, 239, 556 |
| Bse1I | ACTGG | 4 cut(s) | 412, 508, 587, 716 |
| Bse3DI | GCAATG | 1 cut(s) | 6 |
| BseBI | CCWGG | 1 cut(s) | 249 |
| BseDI | CCNNGG | 7 cut(s) | 74, 132, 233, 247, 248, 550, 726 |
| BseGI | GGATG | 5 cut(s) | 84, 90, 271, 291, 647 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 80, 239, 556 |
| BseMI | GCAATG | 1 cut(s) | 6 |
| BseMII | CTCAG | 2 cut(s) | 287, 429 |
| BseNI | ACTGG | 4 cut(s) | 412, 508, 587, 716 |
| BseRI | GAGGAG | 1 cut(s) | 479 |
| BseXI | GCAGC | 2 cut(s) | 389, 633 |
| BsgI | GTGCAG | 1 cut(s) | 388 |
| Bsh1236I | CGCG | 1 cut(s) | 348 |
| Bsh1285I | CGRYCG | 1 cut(s) | 230 |
| BshFI | GGCC | 5 cut(s) | 5, 301, 482, 716, 725 |
| BsiEI | CGRYCG | 1 cut(s) | 230 |
| BsiHKAI | GWGCWC | 1 cut(s) | 308 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 80, 239, 556 |
| BsmAI | GTCTC | 3 cut(s) | 630, 685, 817 |
| BsmBI | CGTCTC | 1 cut(s) | 630 |
| BsmI | GAATGC | 1 cut(s) | 784 |
| BsnI | GGCC | 5 cut(s) | 5, 301, 482, 716, 725 |
| Bso31I | GGTCTC | 1 cut(s) | 817 |
| Bsp1286I | GDGCHC | 2 cut(s) | 308, 759 |
| BspACI | CCGC | 5 cut(s) | 71, 499, 512, 663, 666 |
| BspANI | GGCC | 5 cut(s) | 5, 301, 482, 716, 725 |
| BspCNI | CTCAG | 2 cut(s) | 288, 430 |
| BspFNI | CGCG | 1 cut(s) | 348 |
| BspLI | GGNNCC | 1 cut(s) | 245 |
| BspOI | GCTAGC | 1 cut(s) | 15 |
| BspPI | GGATC | 5 cut(s) | 185, 222, 229, 348, 369 |
| BspTNI | GGTCTC | 1 cut(s) | 817 |
| BsrDI | GCAATG | 1 cut(s) | 6 |
| BsrI | ACTGG | 4 cut(s) | 412, 508, 587, 716 |
| BssECI | CCNNGG | 7 cut(s) | 74, 132, 233, 247, 248, 550, 726 |
| BssNI | GRCGYC | 1 cut(s) | 566 |
| BssSI | CACGAG | 1 cut(s) | 516 |
| BssT1I | CCWWGG | 5 cut(s) | 74, 132, 233, 550, 726 |
| Bst2BI | CACGAG | 1 cut(s) | 516 |
| Bst2UI | CCWGG | 1 cut(s) | 249 |
| Bst4CI | ACNGT | 4 cut(s) | 191, 228, 386, 702 |
| BstACI | GRCGYC | 1 cut(s) | 566 |
| BstC8I | GCNNGC | 3 cut(s) | 13, 484, 547 |
| BstDEI | CTNAG | 2 cut(s) | 296, 438 |
| BstF5I | GGATG | 5 cut(s) | 84, 90, 271, 291, 647 |
| BstFNI | CGCG | 1 cut(s) | 348 |
| BstHHI | GCGC | 1 cut(s) | 348 |
| BstMAI | GTCTC | 3 cut(s) | 630, 685, 817 |
| BstMCI | CGRYCG | 1 cut(s) | 230 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 104, 312, 399, 411, 483, 722, 741 |
| BstNI | CCWGG | 1 cut(s) | 249 |
| BstSCI | CCNGG | 1 cut(s) | 247 |
| BstUI | CGCG | 1 cut(s) | 348 |
| BstV1I | GCAGC | 2 cut(s) | 389, 633 |
| BstV2I | GAAGAC | 1 cut(s) | 40 |
| BstX2I | RGATCY | 3 cut(s) | 177, 214, 319 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 139 |
| BstYI | RGATCY | 3 cut(s) | 177, 214, 319 |
| BsuRI | GGCC | 5 cut(s) | 5, 301, 482, 716, 725 |
| BtgZI | GCGATG | 3 cut(s) | 501, 591, 603 |
| BtsCI | GGATG | 5 cut(s) | 84, 90, 271, 291, 647 |
| BtsIMutI | CAGTG | 1 cut(s) | 405 |
| Cac8I | GCNNGC | 3 cut(s) | 13, 484, 547 |
| CfoI | GCGC | 1 cut(s) | 348 |
| Cfr13I | GGNCC | 2 cut(s) | 714, 723 |
| CviAII | CATG | 1 cut(s) | 625 |
| DdeI | CTNAG | 2 cut(s) | 296, 438 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| EciI | GGCGGA | 2 cut(s) | 60, 514 |
| Ecl136II | GAGCTC | 1 cut(s) | 306 |
| Eco130I | CCWWGG | 5 cut(s) | 74, 132, 233, 550, 726 |
| Eco24I | GRGCYC | 2 cut(s) | 308, 759 |
| Eco31I | GGTCTC | 1 cut(s) | 817 |
| Eco53kI | GAGCTC | 1 cut(s) | 306 |
| Eco57I | CTGAAG | 1 cut(s) | 140 |
| EcoICRI | GAGCTC | 1 cut(s) | 306 |
| EcoRII | CCWGG | 1 cut(s) | 247 |
| EcoT14I | CCWWGG | 5 cut(s) | 74, 132, 233, 550, 726 |
| EcoT38I | GRGCYC | 2 cut(s) | 308, 759 |
| ErhI | CCWWGG | 5 cut(s) | 74, 132, 233, 550, 726 |
| Esp3I | CGTCTC | 1 cut(s) | 630 |
| FaeI | CATG | 1 cut(s) | 628 |
| FaiI | YATR | 8 cut(s) | 110, 148, 417, 471, 536, 626, 818, 825 |
| FatI | CATG | 1 cut(s) | 624 |
| Fnu4HI | GCNGC | 5 cut(s) | 403, 513, 622, 664, 667 |
| FokI | GGATG | 5 cut(s) | 91, 97, 278, 298, 654 |
| FriOI | GRGCYC | 2 cut(s) | 308, 759 |
| Fsp4HI | GCNGC | 5 cut(s) | 403, 513, 622, 664, 667 |
| FspBI | CTAG | 3 cut(s) | 12, 62, 570 |
| GlaI | GCGC | 1 cut(s) | 347 |
| GluI | GCNGC | 5 cut(s) | 403, 513, 622, 664, 667 |
| HaeIII | GGCC | 5 cut(s) | 5, 301, 482, 716, 725 |
| HhaI | GCGC | 1 cut(s) | 348 |
| Hin1I | GRCGYC | 1 cut(s) | 566 |
| Hin1II | CATG | 1 cut(s) | 628 |
| Hin6I | GCGC | 1 cut(s) | 346 |
| HinP1I | GCGC | 1 cut(s) | 346 |
| HincII | GTYRAC | 1 cut(s) | 194 |
| HindII | GTYRAC | 1 cut(s) | 194 |
| HinfI | GANTC | 3 cut(s) | 171, 448, 609 |
| Hpy166II | GTNNAC | 2 cut(s) | 194, 705 |
| Hpy188I | TCNGA | 6 cut(s) | 120, 297, 375, 382, 439, 614 |
| Hpy188III | TCNNGA | 5 cut(s) | 175, 212, 432, 452, 518 |
| Hpy8I | GTNNAC | 2 cut(s) | 194, 705 |
| Hpy99I | CGWCG | 1 cut(s) | 568 |
| HpyAV | CCTTC | 1 cut(s) | 623 |
| HpyCH4III | ACNGT | 4 cut(s) | 191, 228, 386, 702 |
| HpyCH4IV | ACGT | 1 cut(s) | 566 |
| HpyCH4V | TGCA | 2 cut(s) | 405, 782 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 104, 312, 399, 411, 483, 722, 741 |
| HpyF3I | CTNAG | 2 cut(s) | 296, 438 |
| HpySE526I | ACGT | 1 cut(s) | 566 |
| Hsp92I | GRCGYC | 1 cut(s) | 566 |
| Hsp92II | CATG | 1 cut(s) | 628 |
| HspAI | GCGC | 1 cut(s) | 346 |
| LmnI | GCTCC | 1 cut(s) | 466 |
| Lsp1109I | GCAGC | 2 cut(s) | 389, 633 |
| MaeI | CTAG | 3 cut(s) | 12, 62, 570 |
| MaeII | ACGT | 1 cut(s) | 566 |
| MboII | GAAGA | 2 cut(s) | 29, 40 |
| MflI | RGATCY | 3 cut(s) | 177, 214, 319 |
| MhlI | GDGCHC | 2 cut(s) | 308, 759 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 1 cut(s) | 335 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 180, 457, 618 |
| MmeI | TCCRAC | 1 cut(s) | 592 |
| MnlI | CCTC | 5 cut(s) | 291, 388, 457, 467, 641 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 3 cut(s) | 156, 182, 835 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspR9I | CCNGG | 1 cut(s) | 249 |
| Mva1269I | GAATGC | 1 cut(s) | 784 |
| MvaI | CCWGG | 1 cut(s) | 249 |
| MvnI | CGCG | 1 cut(s) | 348 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 104, 312, 399, 411, 483, 722, 741 |
| NheI | GCTAGC | 1 cut(s) | 11 |
| NlaIII | CATG | 1 cut(s) | 628 |
| NlaIV | GGNNCC | 1 cut(s) | 245 |
| NmeAIII | GCCGAG | 1 cut(s) | 327 |
| PasI | CCCWGGG | 1 cut(s) | 248 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 390 |
| PctI | GAATGC | 1 cut(s) | 784 |
| PflFI | GACNNNGTC | 1 cut(s) | 608 |
| PkrI | GCNGC | 5 cut(s) | 404, 514, 623, 665, 668 |
| PleI | GAGTC | 3 cut(s) | 179, 456, 617 |
| PpsI | GAGTC | 3 cut(s) | 179, 456, 617 |
| Psp124BI | GAGCTC | 1 cut(s) | 308 |
| Psp6I | CCWGG | 1 cut(s) | 247 |
| PspGI | CCWGG | 1 cut(s) | 247 |
| PspN4I | GGNNCC | 1 cut(s) | 245 |
| PspPI | GGNCC | 2 cut(s) | 714, 723 |
| PsuI | RGATCY | 3 cut(s) | 177, 214, 319 |
| PsyI | GACNNNGTC | 1 cut(s) | 608 |
| SacI | GAGCTC | 1 cut(s) | 308 |
| SaqAI | TTAA | 3 cut(s) | 156, 182, 835 |
| SatI | GCNGC | 5 cut(s) | 403, 513, 622, 664, 667 |
| Sau96I | GGNCC | 2 cut(s) | 714, 723 |
| SchI | GAGTC | 3 cut(s) | 180, 457, 618 |
| ScrFI | CCNGG | 1 cut(s) | 249 |
| SduI | GDGCHC | 2 cut(s) | 308, 759 |
| SetI | ASST | 8 cut(s) | 67, 275, 308, 399, 429, 569, 652, 787 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 722 |
| Sse9I | AATT | 1 cut(s) | 335 |
| SsiI | CCGC | 5 cut(s) | 71, 499, 512, 663, 666 |
| SspMI | CTAG | 3 cut(s) | 12, 62, 570 |
| SstI | GAGCTC | 1 cut(s) | 308 |
| StyD4I | CCNGG | 1 cut(s) | 247 |
| StyI | CCWWGG | 5 cut(s) | 74, 132, 233, 550, 726 |
| TaaI | ACNGT | 4 cut(s) | 191, 228, 386, 702 |
| TaiI | ACGT | 1 cut(s) | 569 |
| TaqI | TCGA | 3 cut(s) | 51, 276, 563 |
| TaqII | GACCGA | 1 cut(s) | 197 |
| TasI | AATT | 1 cut(s) | 335 |
| TauI | GCSGC | 3 cut(s) | 515, 666, 669 |
| Tru1I | TTAA | 3 cut(s) | 156, 182, 835 |
| Tru9I | TTAA | 3 cut(s) | 156, 182, 835 |
| TscAI | CASTG | 1 cut(s) | 412 |
| TseI | GCWGC | 2 cut(s) | 402, 621 |
| TspGWI | ACGGA | 4 cut(s) | 621, 654, 722, 818 |
| TspRI | CASTG | 1 cut(s) | 412 |
| Tth111I | GACNNNGTC | 1 cut(s) | 608 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 699, 724 |
| XspI | CTAG | 3 cut(s) | 12, 62, 570 |
| ZraI | GACGTC | 1 cut(s) | 567 |