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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 303 |
| AccB1I | GGYRCC | 1 cut(s) | 440 |
| AccII | CGCG | 1 cut(s) | 218 |
| AciI | CCGC | 2 cut(s) | 271, 444 |
| AcoI | YGGCCR | 1 cut(s) | 346 |
| AcyI | GRCGYC | 2 cut(s) | 492, 504 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 241, 470 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 5 cut(s) | 22, 167, 286, 420, 557 |
| AjnI | CCWGG | 1 cut(s) | 526 |
| AluBI | AGCT | 5 cut(s) | 44, 155, 179, 259, 314 |
| AluI | AGCT | 5 cut(s) | 44, 155, 179, 259, 314 |
| Alw21I | GWGCWC | 1 cut(s) | 141 |
| Alw26I | GTCTC | 3 cut(s) | 32, 333, 406 |
| AoxI | GGCC | 3 cut(s) | 183, 265, 346 |
| ApeKI | GCWGC | 1 cut(s) | 536 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 315 |
| AspA2I | CCTAGG | 1 cut(s) | 464 |
| AspLEI | GCGC | 3 cut(s) | 50, 81, 220 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AsuHPI | GGTGA | 3 cut(s) | 527, 535, 542 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| AvrII | CCTAGG | 1 cut(s) | 464 |
| BalI | TGGCCA | 1 cut(s) | 348 |
| BanI | GGYRCC | 1 cut(s) | 440 |
| BbsI | GAAGAC | 2 cut(s) | 252, 386 |
| Bbv12I | GWGCWC | 1 cut(s) | 141 |
| BbvI | GCAGC | 1 cut(s) | 523 |
| BccI | CCATC | 9 cut(s) | 92, 122, 328, 431, 458, 465, 494, 512, 516 |
| BciT130I | CCWGG | 1 cut(s) | 528 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 3 cut(s) | 32, 333, 406 |
| BfaI | CTAG | 3 cut(s) | 35, 126, 465 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 1 cut(s) | 537 |
| BlnI | CCTAGG | 1 cut(s) | 464 |
| BlsI | GCNGC | 1 cut(s) | 538 |
| Bme1390I | CCNGG | 1 cut(s) | 528 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 3 cut(s) | 68, 442, 523 |
| BmrFI | CCNGG | 1 cut(s) | 528 |
| BmsI | GCATC | 1 cut(s) | 523 |
| BpiI | GAAGAC | 2 cut(s) | 252, 386 |
| Bpu10I | CCTNAGC | 1 cut(s) | 180 |
| BsaHI | GRCGYC | 2 cut(s) | 492, 504 |
| BsaJI | CCNNGG | 3 cut(s) | 464, 495, 526 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 241, 470 |
| BseBI | CCWGG | 1 cut(s) | 528 |
| BseDI | CCNNGG | 3 cut(s) | 464, 495, 526 |
| BseGI | GGATG | 3 cut(s) | 114, 450, 505 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 241, 470 |
| BseXI | GCAGC | 1 cut(s) | 523 |
| BsgI | GTGCAG | 1 cut(s) | 390 |
| Bsh1236I | CGCG | 1 cut(s) | 218 |
| BshFI | GGCC | 3 cut(s) | 185, 267, 348 |
| BshNI | GGYRCC | 1 cut(s) | 440 |
| BsiHKAI | GWGCWC | 1 cut(s) | 141 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 241, 470 |
| BsmAI | GTCTC | 3 cut(s) | 32, 333, 406 |
| BsmBI | CGTCTC | 1 cut(s) | 406 |
| BsnI | GGCC | 3 cut(s) | 185, 267, 348 |
| Bsp1286I | GDGCHC | 1 cut(s) | 141 |
| Bsp143I | GATC | 1 cut(s) | 372 |
| Bsp19I | CCATGG | 1 cut(s) | 495 |
| BspACI | CCGC | 2 cut(s) | 271, 444 |
| BspANI | GGCC | 3 cut(s) | 185, 267, 348 |
| BspFNI | CGCG | 1 cut(s) | 218 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspLI | GGNNCC | 3 cut(s) | 68, 442, 523 |
| BspT107I | GGYRCC | 1 cut(s) | 440 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BssECI | CCNNGG | 3 cut(s) | 464, 495, 526 |
| BssMI | GATC | 1 cut(s) | 372 |
| BssNI | GRCGYC | 2 cut(s) | 492, 504 |
| BssT1I | CCWWGG | 2 cut(s) | 464, 495 |
| Bst2UI | CCWGG | 1 cut(s) | 528 |
| BstACI | GRCGYC | 2 cut(s) | 492, 504 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 3 cut(s) | 46, 153, 472 |
| BstDEI | CTNAG | 1 cut(s) | 180 |
| BstDSI | CCRYGG | 1 cut(s) | 495 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 3 cut(s) | 114, 450, 505 |
| BstFNI | CGCG | 1 cut(s) | 218 |
| BstHHI | GCGC | 3 cut(s) | 50, 81, 220 |
| BstKTI | GATC | 1 cut(s) | 375 |
| BstMAI | GTCTC | 3 cut(s) | 32, 333, 406 |
| BstMBI | GATC | 1 cut(s) | 372 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 176 |
| BstNI | CCWGG | 1 cut(s) | 528 |
| BstSCI | CCNGG | 1 cut(s) | 526 |
| BstUI | CGCG | 1 cut(s) | 218 |
| BstV1I | GCAGC | 1 cut(s) | 523 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 386 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 3 cut(s) | 185, 267, 348 |
| BtgI | CCRYGG | 1 cut(s) | 495 |
| BtsCI | GGATG | 3 cut(s) | 114, 450, 505 |
| BtsIMutI | CAGTG | 1 cut(s) | 407 |
| Cac8I | GCNNGC | 3 cut(s) | 46, 153, 472 |
| CciI | TCATGA | 1 cut(s) | 195 |
| CfoI | GCGC | 3 cut(s) | 50, 81, 220 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CseI | GACGC | 3 cut(s) | 224, 493, 500 |
| CviAII | CATG | 5 cut(s) | 196, 208, 488, 496, 512 |
| DdeI | CTNAG | 1 cut(s) | 180 |
| DpnI | GATC | 1 cut(s) | 374 |
| DpnII | GATC | 1 cut(s) | 372 |
| EaeI | YGGCCR | 1 cut(s) | 346 |
| Eco130I | CCWWGG | 2 cut(s) | 464, 495 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoRII | CCWGG | 1 cut(s) | 526 |
| EcoT14I | CCWWGG | 2 cut(s) | 464, 495 |
| ErhI | CCWWGG | 2 cut(s) | 464, 495 |
| Esp3I | CGTCTC | 1 cut(s) | 406 |
| FaeI | CATG | 5 cut(s) | 199, 211, 491, 499, 515 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 5 cut(s) | 195, 207, 487, 495, 511 |
| Fnu4HI | GCNGC | 1 cut(s) | 537 |
| FokI | GGATG | 3 cut(s) | 101, 437, 512 |
| Fsp4HI | GCNGC | 1 cut(s) | 537 |
| FspBI | CTAG | 3 cut(s) | 35, 126, 465 |
| GlaI | GCGC | 3 cut(s) | 49, 80, 219 |
| GluI | GCNGC | 1 cut(s) | 537 |
| HaeIII | GGCC | 3 cut(s) | 185, 267, 348 |
| HgaI | GACGC | 3 cut(s) | 224, 493, 500 |
| HhaI | GCGC | 3 cut(s) | 50, 81, 220 |
| Hin1I | GRCGYC | 2 cut(s) | 492, 504 |
| Hin1II | CATG | 5 cut(s) | 199, 211, 491, 499, 515 |
| Hin6I | GCGC | 3 cut(s) | 48, 79, 218 |
| HinP1I | GCGC | 3 cut(s) | 48, 79, 218 |
| HindIII | AAGCTT | 1 cut(s) | 312 |
| HinfI | GANTC | 2 cut(s) | 110, 382 |
| HphI | GGTGA | 3 cut(s) | 527, 535, 542 |
| Hpy188I | TCNGA | 5 cut(s) | 71, 132, 310, 333, 432 |
| Hpy188III | TCNNGA | 3 cut(s) | 107, 196, 376 |
| HpyAV | CCTTC | 1 cut(s) | 403 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 2 cut(s) | 407, 539 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 176 |
| HpyF3I | CTNAG | 1 cut(s) | 180 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92I | GRCGYC | 2 cut(s) | 492, 504 |
| Hsp92II | CATG | 5 cut(s) | 199, 211, 491, 499, 515 |
| HspAI | GCGC | 3 cut(s) | 48, 79, 218 |
| Kzo9I | GATC | 1 cut(s) | 372 |
| LmnI | GCTCC | 2 cut(s) | 225, 527 |
| LpnPI | CCDG | 7 cut(s) | 23, 30, 36, 92, 456, 513, 540 |
| Lsp1109I | GCAGC | 1 cut(s) | 523 |
| LweI | GCATC | 1 cut(s) | 523 |
| MaeI | CTAG | 3 cut(s) | 35, 126, 465 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 1 cut(s) | 5 |
| MalI | GATC | 1 cut(s) | 374 |
| MboI | GATC | 1 cut(s) | 372 |
| MboII | GAAGA | 2 cut(s) | 257, 391 |
| MhlI | GDGCHC | 1 cut(s) | 141 |
| MlsI | TGGCCA | 1 cut(s) | 348 |
| MluCI | AATT | 2 cut(s) | 189, 424 |
| MluNI | TGGCCA | 1 cut(s) | 348 |
| MlyI | GAGTC | 1 cut(s) | 376 |
| MnlI | CCTC | 4 cut(s) | 235, 245, 278, 457 |
| Mox20I | TGGCCA | 1 cut(s) | 348 |
| MroXI | GAANNNNTTC | 1 cut(s) | 315 |
| MscI | TGGCCA | 1 cut(s) | 348 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 3 cut(s) | 210, 513, 516 |
| Msp20I | TGGCCA | 1 cut(s) | 348 |
| MspA1I | CMGCKG | 1 cut(s) | 44 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspR9I | CCNGG | 1 cut(s) | 528 |
| MvaI | CCWGG | 1 cut(s) | 528 |
| MvnI | CGCG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 176 |
| NcoI | CCATGG | 1 cut(s) | 495 |
| NdeII | GATC | 1 cut(s) | 372 |
| NlaIII | CATG | 5 cut(s) | 199, 211, 491, 499, 515 |
| NlaIV | GGNNCC | 3 cut(s) | 68, 442, 523 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PdmI | GAANNNNTTC | 1 cut(s) | 315 |
| PfeI | GAWTC | 1 cut(s) | 110 |
| PkrI | GCNGC | 1 cut(s) | 538 |
| PleI | GAGTC | 1 cut(s) | 376 |
| PpsI | GAGTC | 1 cut(s) | 376 |
| PsiI | TTATAA | 1 cut(s) | 303 |
| Psp6I | CCWGG | 1 cut(s) | 526 |
| PspGI | CCWGG | 1 cut(s) | 526 |
| PspN4I | GGNNCC | 3 cut(s) | 68, 442, 523 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PvuII | CAGCTG | 1 cut(s) | 44 |
| RseI | CAYNNNNRTG | 3 cut(s) | 210, 513, 516 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 1 cut(s) | 537 |
| Sau3AI | GATC | 1 cut(s) | 372 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 1 cut(s) | 376 |
| ScrFI | CCNGG | 1 cut(s) | 528 |
| SduI | GDGCHC | 1 cut(s) | 141 |
| SfaNI | GCATC | 1 cut(s) | 523 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 210, 513, 516 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 2 cut(s) | 189, 424 |
| SsiI | CCGC | 2 cut(s) | 271, 444 |
| SspMI | CTAG | 3 cut(s) | 35, 126, 465 |
| StyD4I | CCNGG | 1 cut(s) | 526 |
| StyI | CCWWGG | 2 cut(s) | 464, 495 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 1 cut(s) | 375 |
| TasI | AATT | 2 cut(s) | 189, 424 |
| TfiI | GAWTC | 1 cut(s) | 110 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 1 cut(s) | 414 |
| TseI | GCWGC | 1 cut(s) | 536 |
| TspDTI | ATGAA | 2 cut(s) | 224, 243 |
| TspRI | CASTG | 1 cut(s) | 414 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 515 |
| XmaJI | CCTAGG | 1 cut(s) | 464 |
| XmnI | GAANNNNTTC | 1 cut(s) | 315 |
| XspI | CTAG | 3 cut(s) | 35, 126, 465 |