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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 2 cut(s) | 370, 424 |
| AciI | CCGC | 1 cut(s) | 82 |
| AclWI | GGATC | 2 cut(s) | 342, 455 |
| AcsI | RAATTY | 1 cut(s) | 149 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 399 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 9, 41 |
| AluBI | AGCT | 2 cut(s) | 283, 293 |
| AluI | AGCT | 2 cut(s) | 283, 293 |
| Alw21I | GWGCWC | 1 cut(s) | 285 |
| Alw26I | GTCTC | 1 cut(s) | 217 |
| AlwI | GGATC | 2 cut(s) | 342, 455 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 107 |
| Aor13HI | TCCGGA | 2 cut(s) | 370, 424 |
| ApoI | RAATTY | 1 cut(s) | 149 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 126 |
| AspS9I | GGNCC | 1 cut(s) | 7 |
| AvaII | GGWCC | 1 cut(s) | 7 |
| BanII | GRGCYC | 1 cut(s) | 285 |
| Bbv12I | GWGCWC | 1 cut(s) | 285 |
| BccI | CCATC | 1 cut(s) | 63 |
| BcoDI | GTCTC | 1 cut(s) | 217 |
| BfaI | CTAG | 1 cut(s) | 59 |
| Bme18I | GGWCC | 1 cut(s) | 7 |
| BmgT120I | GGNCC | 1 cut(s) | 7 |
| BmiI | GGNNCC | 2 cut(s) | 8, 9 |
| BmsI | GCATC | 1 cut(s) | 163 |
| BsaJI | CCNNGG | 2 cut(s) | 351, 443 |
| BsaWI | WCCGGW | 2 cut(s) | 370, 424 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 399 |
| BseAI | TCCGGA | 2 cut(s) | 370, 424 |
| BseDI | CCNNGG | 2 cut(s) | 351, 443 |
| BseGI | GGATG | 2 cut(s) | 321, 479 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 399 |
| BseMII | CTCAG | 1 cut(s) | 410 |
| BseRI | GAGGAG | 1 cut(s) | 415 |
| BsiHKAI | GWGCWC | 1 cut(s) | 285 |
| BsiSI | CCGG | 2 cut(s) | 371, 425 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 399 |
| BsmAI | GTCTC | 1 cut(s) | 217 |
| BsmBI | CGTCTC | 1 cut(s) | 217 |
| Bsp1286I | GDGCHC | 1 cut(s) | 285 |
| Bsp13I | TCCGGA | 2 cut(s) | 370, 424 |
| Bsp143I | GATC | 5 cut(s) | 165, 347, 361, 433, 447 |
| BspACI | CCGC | 1 cut(s) | 82 |
| BspCNI | CTCAG | 1 cut(s) | 409 |
| BspEI | TCCGGA | 2 cut(s) | 370, 424 |
| BspHI | TCATGA | 1 cut(s) | 277 |
| BspLI | GGNNCC | 2 cut(s) | 8, 9 |
| BspPI | GGATC | 2 cut(s) | 342, 455 |
| BssECI | CCNNGG | 2 cut(s) | 351, 443 |
| BssMI | GATC | 5 cut(s) | 165, 347, 361, 433, 447 |
| Bst4CI | ACNGT | 1 cut(s) | 256 |
| BstDEI | CTNAG | 2 cut(s) | 231, 396 |
| BstDSI | CCRYGG | 2 cut(s) | 351, 443 |
| BstF5I | GGATG | 2 cut(s) | 321, 479 |
| BstKTI | GATC | 5 cut(s) | 168, 350, 364, 436, 450 |
| BstMAI | GTCTC | 1 cut(s) | 217 |
| BstMBI | GATC | 5 cut(s) | 165, 347, 361, 433, 447 |
| BstX2I | RGATCY | 2 cut(s) | 347, 447 |
| BstYI | RGATCY | 2 cut(s) | 347, 447 |
| BtgI | CCRYGG | 2 cut(s) | 351, 443 |
| BtgZI | GCGATG | 1 cut(s) | 191 |
| BtsCI | GGATG | 2 cut(s) | 321, 479 |
| BtsIMutI | CAGTG | 2 cut(s) | 43, 303 |
| CaiI | CAGNNNCTG | 1 cut(s) | 107 |
| CciI | TCATGA | 1 cut(s) | 277 |
| Cfr13I | GGNCC | 1 cut(s) | 7 |
| CviAII | CATG | 4 cut(s) | 46, 278, 314, 482 |
| CviJI | RGCY | 3 cut(s) | 78, 283, 293 |
| CviKI_1 | RGCY | 3 cut(s) | 78, 283, 293 |
| DdeI | CTNAG | 2 cut(s) | 231, 396 |
| DpnI | GATC | 5 cut(s) | 167, 349, 363, 435, 449 |
| DpnII | GATC | 5 cut(s) | 165, 347, 361, 433, 447 |
| Ecl136II | GAGCTC | 1 cut(s) | 283 |
| Eco24I | GRGCYC | 1 cut(s) | 285 |
| Eco47I | GGWCC | 1 cut(s) | 7 |
| Eco53kI | GAGCTC | 1 cut(s) | 283 |
| EcoICRI | GAGCTC | 1 cut(s) | 283 |
| EcoO109I | RGGNCCY | 1 cut(s) | 7 |
| EcoRI | GAATTC | 1 cut(s) | 149 |
| EcoT38I | GRGCYC | 1 cut(s) | 285 |
| Esp3I | CGTCTC | 1 cut(s) | 217 |
| FaeI | CATG | 4 cut(s) | 49, 281, 317, 485 |
| FatI | CATG | 4 cut(s) | 45, 277, 313, 481 |
| FokI | GGATG | 2 cut(s) | 308, 486 |
| FriOI | GRGCYC | 1 cut(s) | 285 |
| FspBI | CTAG | 1 cut(s) | 59 |
| HapII | CCGG | 2 cut(s) | 371, 425 |
| Hin1II | CATG | 4 cut(s) | 49, 281, 317, 485 |
| HinfI | GANTC | 3 cut(s) | 41, 374, 421 |
| HpaII | CCGG | 2 cut(s) | 371, 425 |
| Hpy188I | TCNGA | 2 cut(s) | 121, 399 |
| Hpy188III | TCNNGA | 7 cut(s) | 53, 107, 278, 345, 371, 425, 451 |
| HpyAV | CCTTC | 1 cut(s) | 214 |
| HpyCH4III | ACNGT | 1 cut(s) | 256 |
| HpyCH4IV | ACGT | 1 cut(s) | 33 |
| HpyCH4V | TGCA | 2 cut(s) | 218, 408 |
| HpyF3I | CTNAG | 2 cut(s) | 231, 396 |
| HpySE526I | ACGT | 1 cut(s) | 33 |
| Hsp92II | CATG | 4 cut(s) | 49, 281, 317, 485 |
| KflI | GGGWCCC | 1 cut(s) | 7 |
| Kpn2I | TCCGGA | 2 cut(s) | 370, 424 |
| Kzo9I | GATC | 5 cut(s) | 165, 347, 361, 433, 447 |
| LmnI | GCTCC | 1 cut(s) | 290 |
| LpnPI | CCDG | 4 cut(s) | 66, 120, 384, 438 |
| LweI | GCATC | 1 cut(s) | 163 |
| MaeI | CTAG | 1 cut(s) | 59 |
| MaeII | ACGT | 1 cut(s) | 33 |
| MaeIII | GTNAC | 3 cut(s) | 38, 250, 301 |
| MalI | GATC | 5 cut(s) | 167, 349, 363, 435, 449 |
| MboI | GATC | 5 cut(s) | 165, 347, 361, 433, 447 |
| MboII | GAAGA | 3 cut(s) | 29, 343, 456 |
| MflI | RGATCY | 2 cut(s) | 347, 447 |
| MhlI | GDGCHC | 1 cut(s) | 285 |
| MluCI | AATT | 6 cut(s) | 149, 243, 340, 379, 415, 454 |
| MlyI | GAGTC | 1 cut(s) | 35 |
| MnlI | CCTC | 4 cut(s) | 89, 393, 396, 405 |
| MroI | TCCGGA | 2 cut(s) | 370, 424 |
| MroXI | GAANNNNTTC | 1 cut(s) | 126 |
| MseI | TTAA | 3 cut(s) | 96, 135, 143 |
| MslI | CAYNNNNRTG | 2 cut(s) | 326, 472 |
| MspI | CCGG | 2 cut(s) | 371, 425 |
| NdeII | GATC | 5 cut(s) | 165, 347, 361, 433, 447 |
| NlaIII | CATG | 4 cut(s) | 49, 281, 317, 485 |
| NlaIV | GGNNCC | 2 cut(s) | 8, 9 |
| NmuCI | GTSAC | 2 cut(s) | 38, 301 |
| PagI | TCATGA | 1 cut(s) | 277 |
| PdmI | GAANNNNTTC | 1 cut(s) | 126 |
| PfeI | GAWTC | 2 cut(s) | 374, 421 |
| PleI | GAGTC | 1 cut(s) | 35 |
| PpsI | GAGTC | 1 cut(s) | 35 |
| PpuMI | RGGWCCY | 1 cut(s) | 7 |
| Psp124BI | GAGCTC | 1 cut(s) | 285 |
| Psp5II | RGGWCCY | 1 cut(s) | 7 |
| PspN4I | GGNNCC | 2 cut(s) | 8, 9 |
| PspPI | GGNCC | 1 cut(s) | 7 |
| PspPPI | RGGWCCY | 1 cut(s) | 7 |
| PstNI | CAGNNNCTG | 1 cut(s) | 107 |
| PsuI | RGATCY | 2 cut(s) | 347, 447 |
| RseI | CAYNNNNRTG | 2 cut(s) | 326, 472 |
| SacI | GAGCTC | 1 cut(s) | 285 |
| SaqAI | TTAA | 3 cut(s) | 96, 135, 143 |
| Sau3AI | GATC | 5 cut(s) | 165, 347, 361, 433, 447 |
| Sau96I | GGNCC | 1 cut(s) | 7 |
| SchI | GAGTC | 1 cut(s) | 35 |
| SduI | GDGCHC | 1 cut(s) | 285 |
| SetI | ASST | 6 cut(s) | 36, 60, 275, 285, 295, 407 |
| SfaNI | GCATC | 1 cut(s) | 163 |
| SinI | GGWCC | 1 cut(s) | 7 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 326, 472 |
| Sse9I | AATT | 6 cut(s) | 149, 243, 340, 379, 415, 454 |
| SsiI | CCGC | 1 cut(s) | 82 |
| SspMI | CTAG | 1 cut(s) | 59 |
| SstI | GAGCTC | 1 cut(s) | 285 |
| TaaI | ACNGT | 1 cut(s) | 256 |
| TaiI | ACGT | 1 cut(s) | 36 |
| TaqI | TCGA | 4 cut(s) | 15, 241, 344, 452 |
| TasI | AATT | 6 cut(s) | 149, 243, 340, 379, 415, 454 |
| TfiI | GAWTC | 2 cut(s) | 374, 421 |
| Tru1I | TTAA | 3 cut(s) | 96, 135, 143 |
| Tru9I | TTAA | 3 cut(s) | 96, 135, 143 |
| TscAI | CASTG | 2 cut(s) | 43, 310 |
| TseFI | GTSAC | 2 cut(s) | 38, 301 |
| Tsp45I | GTSAC | 2 cut(s) | 38, 301 |
| TspDTI | ATGAA | 2 cut(s) | 266, 311 |
| TspGWI | ACGGA | 3 cut(s) | 277, 340, 460 |
| TspRI | CASTG | 2 cut(s) | 43, 310 |
| VpaK11BI | GGWCC | 1 cut(s) | 7 |
| XapI | RAATTY | 1 cut(s) | 149 |
| XmnI | GAANNNNTTC | 1 cut(s) | 126 |
| XspI | CTAG | 1 cut(s) | 59 |