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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 600 |
| AccB1I | GGYRCC | 1 cut(s) | 776 |
| AccI | GTMKAC | 1 cut(s) | 33 |
| AccII | CGCG | 3 cut(s) | 194, 224, 876 |
| AciI | CCGC | 5 cut(s) | 173, 194, 203, 224, 568 |
| AcoI | YGGCCR | 1 cut(s) | 297 |
| AcuI | CTGAAG | 1 cut(s) | 627 |
| AcyI | GRCGYC | 1 cut(s) | 777 |
| AfaI | GTAC | 3 cut(s) | 27, 118, 434 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 49, 100, 120, 309, 469, 887 |
| AgsI | TTSAA | 2 cut(s) | 583, 717 |
| AluBI | AGCT | 7 cut(s) | 56, 386, 407, 487, 611, 769, 791 |
| AluI | AGCT | 7 cut(s) | 56, 386, 407, 487, 611, 769, 791 |
| Alw21I | GWGCWC | 2 cut(s) | 372, 771 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 260 |
| Ama87I | CYCGRG | 1 cut(s) | 57 |
| AoxI | GGCC | 6 cut(s) | 11, 91, 110, 122, 225, 297 |
| ApaI | GGGCCC | 1 cut(s) | 114 |
| ApeKI | GCWGC | 5 cut(s) | 175, 205, 243, 254, 505 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 15, 47, 343, 375 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 612 |
| AspLEI | GCGC | 3 cut(s) | 448, 779, 878 |
| AspS9I | GGNCC | 3 cut(s) | 92, 110, 111 |
| AsuII | TTCGAA | 1 cut(s) | 616 |
| AvaI | CYCGRG | 1 cut(s) | 57 |
| BaeGI | GKGCMC | 2 cut(s) | 114, 190 |
| BalI | TGGCCA | 1 cut(s) | 299 |
| BanI | GGYRCC | 1 cut(s) | 776 |
| BanII | GRGCYC | 2 cut(s) | 114, 771 |
| BauI | CACGAG | 2 cut(s) | 105, 183 |
| BbsI | GAAGAC | 1 cut(s) | 480 |
| Bbv12I | GWGCWC | 2 cut(s) | 372, 771 |
| BbvI | GCAGC | 5 cut(s) | 187, 217, 255, 266, 517 |
| BccI | CCATC | 4 cut(s) | 323, 353, 549, 625 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 164, 194, 198, 228, 232, 266 |
| BfaI | CTAG | 2 cut(s) | 357, 831 |
| BfmI | CTRYAG | 2 cut(s) | 241, 868 |
| BfoI | RGCGCY | 1 cut(s) | 780 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 194 |
| BisI | GCNGC | 7 cut(s) | 176, 195, 206, 225, 244, 255, 506 |
| BlsI | GCNGC | 7 cut(s) | 177, 196, 207, 226, 245, 256, 507 |
| BmeT110I | CYCGRG | 1 cut(s) | 57 |
| BmgT120I | GGNCC | 3 cut(s) | 92, 110, 111 |
| BmiI | GGNNCC | 5 cut(s) | 94, 112, 113, 778, 844 |
| BmsI | GCATC | 5 cut(s) | 66, 206, 217, 255, 433 |
| BpiI | GAAGAC | 1 cut(s) | 480 |
| Bpu14I | TTCGAA | 1 cut(s) | 616 |
| BpuEI | CTTGAG | 1 cut(s) | 521 |
| BsaBI | GATNNNNATC | 1 cut(s) | 668 |
| BsaHI | GRCGYC | 1 cut(s) | 777 |
| BsaJI | CCNNGG | 3 cut(s) | 99, 837, 882 |
| BsaWI | WCCGGW | 1 cut(s) | 72 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 49, 100, 120, 309, 469, 887 |
| Bse1I | ACTGG | 1 cut(s) | 29 |
| Bse8I | GATNNNNATC | 1 cut(s) | 668 |
| BseDI | CCNNGG | 3 cut(s) | 99, 837, 882 |
| BseGI | GGATG | 5 cut(s) | 81, 208, 235, 246, 345 |
| BseJI | GATNNNNATC | 1 cut(s) | 668 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 49, 100, 120, 309, 469, 887 |
| BseMII | CTCAG | 2 cut(s) | 252, 783 |
| BseNI | ACTGG | 1 cut(s) | 29 |
| BseSI | GKGCMC | 2 cut(s) | 114, 190 |
| BseXI | GCAGC | 5 cut(s) | 187, 217, 255, 266, 517 |
| BseYI | CCCAGC | 1 cut(s) | 282 |
| BsgI | GTGCAG | 1 cut(s) | 259 |
| Bsh1236I | CGCG | 3 cut(s) | 194, 224, 876 |
| BshFI | GGCC | 6 cut(s) | 13, 93, 112, 124, 227, 299 |
| BshNI | GGYRCC | 1 cut(s) | 776 |
| BsiHKAI | GWGCWC | 2 cut(s) | 372, 771 |
| BsiHKCI | CYCGRG | 1 cut(s) | 57 |
| BsiSI | CCGG | 2 cut(s) | 73, 310 |
| BsiWI | CGTACG | 1 cut(s) | 116 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 49, 100, 120, 309, 469, 887 |
| BsmI | GAATGC | 1 cut(s) | 745 |
| BsnI | GGCC | 6 cut(s) | 13, 93, 112, 124, 227, 299 |
| BsoBI | CYCGRG | 1 cut(s) | 57 |
| Bsp119I | TTCGAA | 1 cut(s) | 616 |
| Bsp120I | GGGCCC | 1 cut(s) | 110 |
| Bsp1286I | GDGCHC | 4 cut(s) | 114, 190, 372, 771 |
| Bsp143I | GATC | 1 cut(s) | 669 |
| Bsp19I | CCATGG | 1 cut(s) | 99 |
| BspACI | CCGC | 5 cut(s) | 173, 194, 203, 224, 568 |
| BspANI | GGCC | 6 cut(s) | 13, 93, 112, 124, 227, 299 |
| BspCNI | CTCAG | 2 cut(s) | 253, 784 |
| BspFNI | CGCG | 3 cut(s) | 194, 224, 876 |
| BspHI | TCATGA | 2 cut(s) | 423, 763 |
| BspLI | GGNNCC | 5 cut(s) | 94, 112, 113, 778, 844 |
| BspMAI | CTGCAG | 1 cut(s) | 245 |
| BspQI | GCTCTTC | 1 cut(s) | 618 |
| BspT104I | TTCGAA | 1 cut(s) | 616 |
| BspT107I | GGYRCC | 1 cut(s) | 776 |
| BsrI | ACTGG | 1 cut(s) | 29 |
| BssECI | CCNNGG | 3 cut(s) | 99, 837, 882 |
| BssMI | GATC | 1 cut(s) | 669 |
| BssNI | GRCGYC | 1 cut(s) | 777 |
| BssSI | CACGAG | 2 cut(s) | 105, 183 |
| BssT1I | CCWWGG | 2 cut(s) | 99, 882 |
| Bst2BI | CACGAG | 2 cut(s) | 105, 183 |
| Bst6I | CTCTTC | 1 cut(s) | 618 |
| BstACI | GRCGYC | 1 cut(s) | 777 |
| BstBI | TTCGAA | 1 cut(s) | 616 |
| BstC8I | GCNNGC | 1 cut(s) | 384 |
| BstDEI | CTNAG | 2 cut(s) | 261, 792 |
| BstDSI | CCRYGG | 2 cut(s) | 99, 837 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 467 |
| BstF5I | GGATG | 5 cut(s) | 81, 208, 235, 246, 345 |
| BstFNI | CGCG | 3 cut(s) | 194, 224, 876 |
| BstH2I | RGCGCY | 1 cut(s) | 780 |
| BstHHI | GCGC | 3 cut(s) | 448, 779, 878 |
| BstKTI | GATC | 1 cut(s) | 672 |
| BstMBI | GATC | 1 cut(s) | 669 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 194 |
| BstNSI | RCATGY | 1 cut(s) | 83 |
| BstSFI | CTRYAG | 2 cut(s) | 241, 868 |
| BstSLI | GKGCMC | 2 cut(s) | 114, 190 |
| BstUI | CGCG | 3 cut(s) | 194, 224, 876 |
| BstV1I | GCAGC | 5 cut(s) | 187, 217, 255, 266, 517 |
| BstV2I | GAAGAC | 1 cut(s) | 480 |
| BsuRI | GGCC | 6 cut(s) | 13, 93, 112, 124, 227, 299 |
| BtgI | CCRYGG | 2 cut(s) | 99, 837 |
| BtsCI | GGATG | 5 cut(s) | 81, 208, 235, 246, 345 |
| Cac8I | GCNNGC | 1 cut(s) | 384 |
| CaiI | CAGNNNCTG | 1 cut(s) | 260 |
| CciI | TCATGA | 2 cut(s) | 423, 763 |
| CfoI | GCGC | 3 cut(s) | 448, 779, 878 |
| Cfr13I | GGNCC | 3 cut(s) | 92, 110, 111 |
| CseI | GACGC | 1 cut(s) | 167 |
| Csp6I | GTAC | 3 cut(s) | 26, 117, 433 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 276, 311 |
| CviAII | CATG | 6 cut(s) | 80, 100, 424, 436, 764, 781 |
| CviQI | GTAC | 3 cut(s) | 26, 117, 433 |
| DdeI | CTNAG | 2 cut(s) | 261, 792 |
| DinI | GGCGCC | 1 cut(s) | 778 |
| DpnI | GATC | 1 cut(s) | 671 |
| DpnII | GATC | 1 cut(s) | 669 |
| EaeI | YGGCCR | 1 cut(s) | 297 |
| Eam1104I | CTCTTC | 1 cut(s) | 618 |
| EarI | CTCTTC | 1 cut(s) | 618 |
| Ecl136II | GAGCTC | 1 cut(s) | 769 |
| Eco130I | CCWWGG | 2 cut(s) | 99, 882 |
| Eco24I | GRGCYC | 2 cut(s) | 114, 771 |
| Eco53kI | GAGCTC | 1 cut(s) | 769 |
| Eco57I | CTGAAG | 1 cut(s) | 627 |
| Eco88I | CYCGRG | 1 cut(s) | 57 |
| EcoICRI | GAGCTC | 1 cut(s) | 769 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 467 |
| EcoO109I | RGGNCCY | 1 cut(s) | 111 |
| EcoT14I | CCWWGG | 2 cut(s) | 99, 882 |
| EcoT22I | ATGCAT | 1 cut(s) | 81 |
| EcoT38I | GRGCYC | 2 cut(s) | 114, 771 |
| EgeI | GGCGCC | 1 cut(s) | 778 |
| EheI | GGCGCC | 1 cut(s) | 778 |
| ErhI | CCWWGG | 2 cut(s) | 99, 882 |
| FaeI | CATG | 6 cut(s) | 83, 103, 427, 439, 767, 784 |
| FatI | CATG | 6 cut(s) | 79, 99, 423, 435, 763, 780 |
| FauI | CCCGC | 1 cut(s) | 180 |
| FblI | GTMKAC | 1 cut(s) | 33 |
| Fnu4HI | GCNGC | 7 cut(s) | 176, 195, 206, 225, 244, 255, 506 |
| FokI | GGATG | 5 cut(s) | 88, 195, 222, 233, 332 |
| FriOI | GRGCYC | 2 cut(s) | 114, 771 |
| Fsp4HI | GCNGC | 7 cut(s) | 176, 195, 206, 225, 244, 255, 506 |
| FspBI | CTAG | 2 cut(s) | 357, 831 |
| GlaI | GCGC | 3 cut(s) | 447, 778, 877 |
| GluI | GCNGC | 7 cut(s) | 176, 195, 206, 225, 244, 255, 506 |
| GsaI | CCCAGC | 1 cut(s) | 286 |
| HaeII | RGCGCY | 1 cut(s) | 780 |
| HaeIII | GGCC | 6 cut(s) | 13, 93, 112, 124, 227, 299 |
| HapII | CCGG | 2 cut(s) | 73, 310 |
| HgaI | GACGC | 1 cut(s) | 167 |
| HhaI | GCGC | 3 cut(s) | 448, 779, 878 |
| Hin1I | GRCGYC | 1 cut(s) | 777 |
| Hin1II | CATG | 6 cut(s) | 83, 103, 427, 439, 767, 784 |
| Hin6I | GCGC | 3 cut(s) | 446, 777, 876 |
| HinP1I | GCGC | 3 cut(s) | 446, 777, 876 |
| HincII | GTYRAC | 1 cut(s) | 34 |
| HindII | GTYRAC | 1 cut(s) | 34 |
| HinfI | GANTC | 4 cut(s) | 527, 618, 679, 860 |
| HpaII | CCGG | 2 cut(s) | 73, 310 |
| Hpy166II | GTNNAC | 1 cut(s) | 34 |
| Hpy188I | TCNGA | 4 cut(s) | 143, 363, 607, 729 |
| Hpy188III | TCNNGA | 7 cut(s) | 338, 424, 524, 539, 673, 764, 857 |
| Hpy8I | GTNNAC | 1 cut(s) | 34 |
| Hpy99I | CGWCG | 1 cut(s) | 157 |
| HpyAV | CCTTC | 3 cut(s) | 177, 700, 706 |
| HpyCH4IV | ACGT | 3 cut(s) | 366, 748, 786 |
| HpyCH4V | TGCA | 5 cut(s) | 79, 160, 243, 276, 743 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 194 |
| HpyF3I | CTNAG | 2 cut(s) | 261, 792 |
| HpySE526I | ACGT | 3 cut(s) | 366, 748, 786 |
| Hsp92I | GRCGYC | 1 cut(s) | 777 |
| Hsp92II | CATG | 6 cut(s) | 83, 103, 427, 439, 767, 784 |
| HspAI | GCGC | 3 cut(s) | 446, 777, 876 |
| KasI | GGCGCC | 1 cut(s) | 776 |
| Kzo9I | GATC | 1 cut(s) | 669 |
| LguI | GCTCTTC | 1 cut(s) | 618 |
| LmnI | GCTCC | 1 cut(s) | 453 |
| Lsp1109I | GCAGC | 5 cut(s) | 187, 217, 255, 266, 517 |
| LweI | GCATC | 5 cut(s) | 66, 206, 217, 255, 433 |
| MaeI | CTAG | 2 cut(s) | 357, 831 |
| MaeII | ACGT | 3 cut(s) | 366, 748, 786 |
| MaeIII | GTNAC | 2 cut(s) | 231, 524 |
| MalI | GATC | 1 cut(s) | 671 |
| MboI | GATC | 1 cut(s) | 669 |
| MboII | GAAGA | 3 cut(s) | 485, 605, 688 |
| MhlI | GDGCHC | 4 cut(s) | 114, 190, 372, 771 |
| MlsI | TGGCCA | 1 cut(s) | 299 |
| MluCI | AATT | 2 cut(s) | 417, 721 |
| MluNI | TGGCCA | 1 cut(s) | 299 |
| Mly113I | GGCGCC | 1 cut(s) | 777 |
| MlyI | GAGTC | 2 cut(s) | 521, 869 |
| Mox20I | TGGCCA | 1 cut(s) | 299 |
| Mph1103I | ATGCAT | 1 cut(s) | 81 |
| MroXI | GAANNNNTTC | 1 cut(s) | 612 |
| MscI | TGGCCA | 1 cut(s) | 299 |
| MseI | TTAA | 1 cut(s) | 321 |
| Msp20I | TGGCCA | 1 cut(s) | 299 |
| MspI | CCGG | 2 cut(s) | 73, 310 |
| Mva1269I | GAATGC | 1 cut(s) | 745 |
| MvnI | CGCG | 3 cut(s) | 194, 224, 876 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 194 |
| NarI | GGCGCC | 1 cut(s) | 777 |
| NcoI | CCATGG | 1 cut(s) | 99 |
| NdeII | GATC | 1 cut(s) | 669 |
| NlaIII | CATG | 6 cut(s) | 83, 103, 427, 439, 767, 784 |
| NlaIV | GGNNCC | 5 cut(s) | 94, 112, 113, 778, 844 |
| NmuCI | GTSAC | 1 cut(s) | 524 |
| NsiI | ATGCAT | 1 cut(s) | 81 |
| NspI | RCATGY | 1 cut(s) | 83 |
| NspV | TTCGAA | 1 cut(s) | 616 |
| PagI | TCATGA | 2 cut(s) | 423, 763 |
| PciSI | GCTCTTC | 1 cut(s) | 618 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 112 |
| PctI | GAATGC | 1 cut(s) | 745 |
| PdmI | GAANNNNTTC | 1 cut(s) | 612 |
| PfeI | GAWTC | 2 cut(s) | 618, 679 |
| Pfl23II | CGTACG | 1 cut(s) | 116 |
| PkrI | GCNGC | 7 cut(s) | 177, 196, 207, 226, 245, 256, 507 |
| PleI | GAGTC | 2 cut(s) | 521, 868 |
| PluTI | GGCGCC | 1 cut(s) | 780 |
| PpsI | GAGTC | 2 cut(s) | 521, 868 |
| PsiI | TTATAA | 1 cut(s) | 600 |
| Psp124BI | GAGCTC | 1 cut(s) | 771 |
| PspFI | CCCAGC | 1 cut(s) | 282 |
| PspLI | CGTACG | 1 cut(s) | 116 |
| PspN4I | GGNNCC | 5 cut(s) | 94, 112, 113, 778, 844 |
| PspOMI | GGGCCC | 1 cut(s) | 110 |
| PspPI | GGNCC | 3 cut(s) | 92, 110, 111 |
| PstI | CTGCAG | 1 cut(s) | 245 |
| PstNI | CAGNNNCTG | 1 cut(s) | 260 |
| RsaI | GTAC | 3 cut(s) | 27, 118, 434 |
| RsaNI | GTAC | 3 cut(s) | 26, 117, 433 |
| SacI | GAGCTC | 1 cut(s) | 771 |
| SalI | GTCGAC | 1 cut(s) | 32 |
| SapI | GCTCTTC | 1 cut(s) | 618 |
| SaqAI | TTAA | 1 cut(s) | 321 |
| SatI | GCNGC | 7 cut(s) | 176, 195, 206, 225, 244, 255, 506 |
| Sau3AI | GATC | 1 cut(s) | 669 |
| Sau96I | GGNCC | 3 cut(s) | 92, 110, 111 |
| SchI | GAGTC | 2 cut(s) | 521, 869 |
| SduI | GDGCHC | 4 cut(s) | 114, 190, 372, 771 |
| SfaNI | GCATC | 5 cut(s) | 66, 206, 217, 255, 433 |
| SfcI | CTRYAG | 2 cut(s) | 241, 868 |
| SfoI | GGCGCC | 1 cut(s) | 778 |
| SfuI | TTCGAA | 1 cut(s) | 616 |
| SmlI | CTYRAG | 1 cut(s) | 500 |
| SmoI | CTYRAG | 1 cut(s) | 500 |
| Sse9I | AATT | 2 cut(s) | 417, 721 |
| SsiI | CCGC | 5 cut(s) | 173, 194, 203, 224, 568 |
| SspDI | GGCGCC | 1 cut(s) | 776 |
| SspMI | CTAG | 2 cut(s) | 357, 831 |
| SstI | GAGCTC | 1 cut(s) | 771 |
| StyI | CCWWGG | 2 cut(s) | 99, 882 |
| TaiI | ACGT | 3 cut(s) | 369, 751, 789 |
| TaqI | TCGA | 4 cut(s) | 33, 65, 616, 672 |
| TasI | AATT | 2 cut(s) | 417, 721 |
| TauI | GCSGC | 2 cut(s) | 197, 227 |
| TfiI | GAWTC | 2 cut(s) | 618, 679 |
| Tru1I | TTAA | 1 cut(s) | 321 |
| Tru9I | TTAA | 1 cut(s) | 321 |
| TseFI | GTSAC | 1 cut(s) | 524 |
| TseI | GCWGC | 5 cut(s) | 175, 205, 243, 254, 505 |
| Tsp45I | GTSAC | 1 cut(s) | 524 |
| TspDTI | ATGAA | 4 cut(s) | 127, 452, 752, 797 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 467 |
| XceI | RCATGY | 1 cut(s) | 83 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 486 |
| XmiI | GTMKAC | 1 cut(s) | 33 |
| XmnI | GAANNNNTTC | 1 cut(s) | 612 |
| XspI | CTAG | 2 cut(s) | 357, 831 |
| Zsp2I | ATGCAT | 1 cut(s) | 81 |