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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 447, 506, 581, 662 |
| AccIII | TCCGGA | 1 cut(s) | 412 |
| AciI | CCGC | 2 cut(s) | 145, 585 |
| AcoI | YGGCCR | 1 cut(s) | 493 |
| AcyI | GRCGYC | 2 cut(s) | 448, 507 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 607, 611 |
| AgsI | TTSAA | 4 cut(s) | 80, 160, 544, 698 |
| AluBI | AGCT | 1 cut(s) | 346 |
| AluI | AGCT | 1 cut(s) | 346 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| Aor13HI | TCCGGA | 1 cut(s) | 412 |
| AoxI | GGCC | 2 cut(s) | 493, 720 |
| ApeKI | GCWGC | 1 cut(s) | 677 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspA2I | CCTAGG | 2 cut(s) | 605, 667 |
| AspLEI | GCGC | 3 cut(s) | 450, 509, 550 |
| AsuHPI | GGTGA | 3 cut(s) | 668, 676, 683 |
| AvrII | CCTAGG | 2 cut(s) | 605, 667 |
| BaeGI | GKGCMC | 1 cut(s) | 667 |
| BalI | TGGCCA | 1 cut(s) | 495 |
| BanI | GGYRCC | 4 cut(s) | 447, 506, 581, 662 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BbsI | GAAGAC | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BbvI | GCAGC | 1 cut(s) | 664 |
| BccI | CCATC | 7 cut(s) | 126, 280, 534, 572, 635, 653, 657 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 3 cut(s) | 122, 606, 668 |
| BfoI | RGCGCY | 3 cut(s) | 451, 510, 551 |
| BisI | GCNGC | 1 cut(s) | 678 |
| BlnI | CCTAGG | 2 cut(s) | 605, 667 |
| BlsI | GCNGC | 1 cut(s) | 679 |
| BmiI | GGNNCC | 5 cut(s) | 355, 449, 508, 583, 664 |
| BmsI | GCATC | 2 cut(s) | 226, 664 |
| BpiI | GAAGAC | 1 cut(s) | 57 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bpu10I | CCTNAGC | 1 cut(s) | 717 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaHI | GRCGYC | 2 cut(s) | 448, 507 |
| BsaI | GGTCTC | 1 cut(s) | 76 |
| BsaJI | CCNNGG | 3 cut(s) | 605, 636, 667 |
| BsaWI | WCCGGW | 1 cut(s) | 412 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 607, 611 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseAI | TCCGGA | 1 cut(s) | 412 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 3 cut(s) | 605, 636, 667 |
| BseGI | GGATG | 4 cut(s) | 22, 96, 384, 646 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 607, 611 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 667 |
| BseXI | GCAGC | 1 cut(s) | 664 |
| BshFI | GGCC | 2 cut(s) | 495, 722 |
| BshNI | GGYRCC | 4 cut(s) | 447, 506, 581, 662 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BsiSI | CCGG | 1 cut(s) | 413 |
| BslFI | GGGAC | 1 cut(s) | 605 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 607, 611 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsmFI | GGGAC | 1 cut(s) | 605 |
| BsnI | GGCC | 2 cut(s) | 495, 722 |
| Bso31I | GGTCTC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 2 cut(s) | 348, 667 |
| Bsp13I | TCCGGA | 1 cut(s) | 412 |
| Bsp19I | CCATGG | 1 cut(s) | 636 |
| BspACI | CCGC | 2 cut(s) | 145, 585 |
| BspANI | GGCC | 2 cut(s) | 495, 722 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspEI | TCCGGA | 1 cut(s) | 412 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 5 cut(s) | 355, 449, 508, 583, 664 |
| BspT107I | GGYRCC | 4 cut(s) | 447, 506, 581, 662 |
| BspTNI | GGTCTC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 3 cut(s) | 605, 636, 667 |
| BssNI | GRCGYC | 2 cut(s) | 448, 507 |
| BssT1I | CCWWGG | 3 cut(s) | 605, 636, 667 |
| Bst4CI | ACNGT | 1 cut(s) | 319 |
| BstACI | GRCGYC | 2 cut(s) | 448, 507 |
| BstC8I | GCNNGC | 1 cut(s) | 613 |
| BstDEI | CTNAG | 5 cut(s) | 294, 438, 470, 519, 717 |
| BstDSI | CCRYGG | 1 cut(s) | 636 |
| BstF5I | GGATG | 4 cut(s) | 22, 96, 384, 646 |
| BstH2I | RGCGCY | 3 cut(s) | 451, 510, 551 |
| BstHHI | GCGC | 3 cut(s) | 450, 509, 550 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 454, 545 |
| BstSLI | GKGCMC | 1 cut(s) | 667 |
| BstV1I | GCAGC | 1 cut(s) | 664 |
| BstV2I | GAAGAC | 1 cut(s) | 57 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 503 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuRI | GGCC | 2 cut(s) | 495, 722 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtgI | CCRYGG | 1 cut(s) | 636 |
| BtgZI | GCGATG | 1 cut(s) | 254 |
| BtsCI | GGATG | 4 cut(s) | 22, 96, 384, 646 |
| Cac8I | GCNNGC | 1 cut(s) | 613 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 3 cut(s) | 450, 509, 550 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 545 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 7 cut(s) | 101, 341, 377, 497, 629, 637, 653 |
| CviJI | RGCY | 8 cut(s) | 141, 346, 356, 495, 525, 604, 611, 722 |
| CviKI_1 | RGCY | 8 cut(s) | 141, 346, 356, 495, 525, 604, 611, 722 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 5 cut(s) | 294, 438, 470, 519, 717 |
| DinI | GGCGCC | 2 cut(s) | 449, 508 |
| EaeI | YGGCCR | 1 cut(s) | 493 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco130I | CCWWGG | 3 cut(s) | 605, 636, 667 |
| Eco147I | AGGCCT | 1 cut(s) | 722 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco31I | GGTCTC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoT14I | CCWWGG | 3 cut(s) | 605, 636, 667 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| EgeI | GGCGCC | 2 cut(s) | 449, 508 |
| EheI | GGCGCC | 2 cut(s) | 449, 508 |
| ErhI | CCWWGG | 3 cut(s) | 605, 636, 667 |
| FaeI | CATG | 7 cut(s) | 104, 344, 380, 500, 632, 640, 656 |
| FaqI | GGGAC | 1 cut(s) | 605 |
| FatI | CATG | 7 cut(s) | 100, 340, 376, 496, 628, 636, 652 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 1 cut(s) | 678 |
| FokI | GGATG | 4 cut(s) | 29, 83, 371, 653 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| Fsp4HI | GCNGC | 1 cut(s) | 678 |
| FspBI | CTAG | 3 cut(s) | 122, 606, 668 |
| GlaI | GCGC | 3 cut(s) | 449, 508, 549 |
| GluI | GCNGC | 1 cut(s) | 678 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 3 cut(s) | 451, 510, 551 |
| HaeIII | GGCC | 2 cut(s) | 495, 722 |
| HapII | CCGG | 1 cut(s) | 413 |
| HgaI | GACGC | 1 cut(s) | 545 |
| HhaI | GCGC | 3 cut(s) | 450, 509, 550 |
| Hin1I | GRCGYC | 2 cut(s) | 448, 507 |
| Hin1II | CATG | 7 cut(s) | 104, 344, 380, 500, 632, 640, 656 |
| Hin6I | GCGC | 3 cut(s) | 448, 507, 548 |
| HinP1I | GCGC | 3 cut(s) | 448, 507, 548 |
| HinfI | GANTC | 7 cut(s) | 4, 20, 104, 256, 327, 416, 632 |
| HpaII | CCGG | 1 cut(s) | 413 |
| HphI | GGTGA | 3 cut(s) | 668, 676, 683 |
| Hpy166II | GTNNAC | 1 cut(s) | 595 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 393, 712 |
| Hpy188III | TCNNGA | 2 cut(s) | 341, 413 |
| Hpy8I | GTNNAC | 1 cut(s) | 595 |
| HpyAV | CCTTC | 3 cut(s) | 54, 277, 398 |
| HpyCH4III | ACNGT | 1 cut(s) | 319 |
| HpyCH4V | TGCA | 2 cut(s) | 281, 680 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 454, 545 |
| HpyF3I | CTNAG | 5 cut(s) | 294, 438, 470, 519, 717 |
| Hsp92I | GRCGYC | 2 cut(s) | 448, 507 |
| Hsp92II | CATG | 7 cut(s) | 104, 344, 380, 500, 632, 640, 656 |
| HspAI | GCGC | 3 cut(s) | 448, 507, 548 |
| KasI | GGCGCC | 2 cut(s) | 447, 506 |
| Kpn2I | TCCGGA | 1 cut(s) | 412 |
| LmnI | GCTCC | 1 cut(s) | 353 |
| LpnPI | CCDG | 7 cut(s) | 41, 70, 426, 477, 597, 614, 704 |
| Lsp1109I | GCAGC | 1 cut(s) | 664 |
| LweI | GCATC | 2 cut(s) | 226, 664 |
| MaeI | CTAG | 3 cut(s) | 122, 606, 668 |
| MaeIII | GTNAC | 1 cut(s) | 313 |
| MboII | GAAGA | 3 cut(s) | 59, 62, 92 |
| MhlI | GDGCHC | 2 cut(s) | 348, 667 |
| MlsI | TGGCCA | 1 cut(s) | 495 |
| MluCI | AATT | 3 cut(s) | 212, 403, 421 |
| MluNI | TGGCCA | 1 cut(s) | 495 |
| Mly113I | GGCGCC | 2 cut(s) | 448, 507 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 626 |
| MnlI | CCTC | 9 cut(s) | 152, 246, 437, 445, 469, 473, 499, 561, 598 |
| Mox20I | TGGCCA | 1 cut(s) | 495 |
| MroI | TCCGGA | 1 cut(s) | 412 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 495 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 5 cut(s) | 15, 501, 531, 654, 657 |
| Msp20I | TGGCCA | 1 cut(s) | 495 |
| MspI | CCGG | 1 cut(s) | 413 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 454, 545 |
| NarI | GGCGCC | 2 cut(s) | 448, 507 |
| NcoI | CCATGG | 1 cut(s) | 636 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NlaIII | CATG | 7 cut(s) | 104, 344, 380, 500, 632, 640, 656 |
| NlaIV | GGNNCC | 5 cut(s) | 355, 449, 508, 583, 664 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PceI | AGGCCT | 1 cut(s) | 722 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 315 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 3 cut(s) | 20, 327, 416 |
| PkrI | GCNGC | 1 cut(s) | 679 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 626 |
| PluTI | GGCGCC | 2 cut(s) | 451, 510 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 626 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| PspN4I | GGNNCC | 5 cut(s) | 355, 449, 508, 583, 664 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 5 cut(s) | 15, 501, 531, 654, 657 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| SatI | GCNGC | 1 cut(s) | 678 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 626 |
| SduI | GDGCHC | 2 cut(s) | 348, 667 |
| SetI | ASST | 6 cut(s) | 65, 123, 269, 348, 437, 673 |
| SfaNI | GCATC | 2 cut(s) | 226, 664 |
| SfoI | GGCGCC | 2 cut(s) | 449, 508 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 15, 501, 531, 654, 657 |
| Sse9I | AATT | 3 cut(s) | 212, 403, 421 |
| SseBI | AGGCCT | 1 cut(s) | 722 |
| SsiI | CCGC | 2 cut(s) | 145, 585 |
| SspDI | GGCGCC | 2 cut(s) | 447, 506 |
| SspMI | CTAG | 3 cut(s) | 122, 606, 668 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| StuI | AGGCCT | 1 cut(s) | 722 |
| StyI | CCWWGG | 3 cut(s) | 605, 636, 667 |
| TaaI | ACNGT | 1 cut(s) | 319 |
| TaqI | TCGA | 2 cut(s) | 309, 567 |
| TasI | AATT | 3 cut(s) | 212, 403, 421 |
| TfiI | GAWTC | 3 cut(s) | 20, 327, 416 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TseI | GCWGC | 1 cut(s) | 677 |
| TspDTI | ATGAA | 4 cut(s) | 56, 60, 224, 329 |
| TspGWI | ACGGA | 1 cut(s) | 580 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 608, 656 |
| XmaJI | CCTAGG | 2 cut(s) | 605, 667 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 3 cut(s) | 122, 606, 668 |