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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 309 |
| Acc65I | GGTACC | 1 cut(s) | 149 |
| AccB1I | GGYRCC | 1 cut(s) | 149 |
| AccII | CGCG | 1 cut(s) | 249 |
| AccIII | TCCGGA | 1 cut(s) | 229 |
| AcsI | RAATTY | 1 cut(s) | 8 |
| AfaI | GTAC | 1 cut(s) | 151 |
| AflIII | ACRYGT | 1 cut(s) | 378 |
| AjnI | CCWGG | 1 cut(s) | 298 |
| AluBI | AGCT | 2 cut(s) | 142, 164 |
| AluI | AGCT | 2 cut(s) | 142, 164 |
| Alw21I | GWGCWC | 1 cut(s) | 360 |
| Alw44I | GTGCAC | 1 cut(s) | 356 |
| Aor13HI | TCCGGA | 1 cut(s) | 229 |
| ApaLI | GTGCAC | 1 cut(s) | 356 |
| ApoI | RAATTY | 1 cut(s) | 8 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 218, 250 |
| Asp718I | GGTACC | 1 cut(s) | 149 |
| AspLEI | GCGC | 1 cut(s) | 251 |
| AspS9I | GGNCC | 1 cut(s) | 311 |
| AvaII | GGWCC | 1 cut(s) | 311 |
| BaeGI | GKGCMC | 1 cut(s) | 360 |
| BanI | GGYRCC | 1 cut(s) | 149 |
| BbsI | GAAGAC | 1 cut(s) | 56 |
| Bbv12I | GWGCWC | 1 cut(s) | 360 |
| BciT130I | CCWGG | 1 cut(s) | 300 |
| BfaI | CTAG | 2 cut(s) | 117, 204 |
| Bme1390I | CCNGG | 1 cut(s) | 300 |
| Bme18I | GGWCC | 1 cut(s) | 311 |
| BmgT120I | GGNCC | 1 cut(s) | 311 |
| BmiI | GGNNCC | 2 cut(s) | 151, 217 |
| BmrFI | CCNGG | 1 cut(s) | 300 |
| BmsI | GCATC | 2 cut(s) | 110, 132 |
| BpiI | GAAGAC | 1 cut(s) | 56 |
| BsaBI | GATNNNNATC | 1 cut(s) | 41 |
| BsaJI | CCNNGG | 1 cut(s) | 210 |
| BsaWI | WCCGGW | 1 cut(s) | 229 |
| Bse8I | GATNNNNATC | 1 cut(s) | 41 |
| BseAI | TCCGGA | 1 cut(s) | 229 |
| BseBI | CCWGG | 1 cut(s) | 300 |
| BseDI | CCNNGG | 1 cut(s) | 210 |
| BseJI | GATNNNNATC | 1 cut(s) | 41 |
| BseSI | GKGCMC | 1 cut(s) | 360 |
| Bsh1236I | CGCG | 1 cut(s) | 249 |
| BshNI | GGYRCC | 1 cut(s) | 149 |
| BsiHKAI | GWGCWC | 1 cut(s) | 360 |
| BsiSI | CCGG | 1 cut(s) | 230 |
| Bsp1286I | GDGCHC | 1 cut(s) | 360 |
| Bsp13I | TCCGGA | 1 cut(s) | 229 |
| Bsp143I | GATC | 1 cut(s) | 42 |
| BspEI | TCCGGA | 1 cut(s) | 229 |
| BspFNI | CGCG | 1 cut(s) | 249 |
| BspHI | TCATGA | 1 cut(s) | 136 |
| BspLI | GGNNCC | 2 cut(s) | 151, 217 |
| BspT107I | GGYRCC | 1 cut(s) | 149 |
| BssECI | CCNNGG | 1 cut(s) | 210 |
| BssMI | GATC | 1 cut(s) | 42 |
| Bst2UI | CCWGG | 1 cut(s) | 300 |
| Bst4CI | ACNGT | 2 cut(s) | 287, 367 |
| BstC8I | GCNNGC | 1 cut(s) | 356 |
| BstDSI | CCRYGG | 1 cut(s) | 210 |
| BstFNI | CGCG | 1 cut(s) | 249 |
| BstHHI | GCGC | 1 cut(s) | 251 |
| BstKTI | GATC | 1 cut(s) | 45 |
| BstMBI | GATC | 1 cut(s) | 42 |
| BstNI | CCWGG | 1 cut(s) | 300 |
| BstSCI | CCNGG | 1 cut(s) | 298 |
| BstSLI | GKGCMC | 1 cut(s) | 360 |
| BstUI | CGCG | 1 cut(s) | 249 |
| BstV2I | GAAGAC | 1 cut(s) | 56 |
| BtgI | CCRYGG | 1 cut(s) | 210 |
| BtsIMutI | CAGTG | 1 cut(s) | 27 |
| Cac8I | GCNNGC | 1 cut(s) | 356 |
| CciI | TCATGA | 1 cut(s) | 136 |
| CfoI | GCGC | 1 cut(s) | 251 |
| Cfr13I | GGNCC | 1 cut(s) | 311 |
| CseI | GACGC | 1 cut(s) | 273 |
| Csp6I | GTAC | 1 cut(s) | 150 |
| CviAII | CATG | 2 cut(s) | 137, 154 |
| CviJI | RGCY | 4 cut(s) | 89, 142, 164, 344 |
| CviKI_1 | RGCY | 4 cut(s) | 89, 142, 164, 344 |
| CviQI | GTAC | 1 cut(s) | 150 |
| DpnI | GATC | 1 cut(s) | 44 |
| DpnII | GATC | 1 cut(s) | 42 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 309 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 309 |
| Eco47I | GGWCC | 1 cut(s) | 311 |
| EcoRI | GAATTC | 1 cut(s) | 8 |
| EcoRII | CCWGG | 1 cut(s) | 298 |
| EcoT22I | ATGCAT | 1 cut(s) | 125 |
| FaeI | CATG | 2 cut(s) | 140, 157 |
| FaiI | YATR | 6 cut(s) | 138, 155, 182, 198, 243, 316 |
| FatI | CATG | 2 cut(s) | 136, 153 |
| FspBI | CTAG | 2 cut(s) | 117, 204 |
| GlaI | GCGC | 1 cut(s) | 250 |
| HapII | CCGG | 1 cut(s) | 230 |
| HgaI | GACGC | 1 cut(s) | 273 |
| HhaI | GCGC | 1 cut(s) | 251 |
| Hin1II | CATG | 2 cut(s) | 140, 157 |
| Hin6I | GCGC | 1 cut(s) | 249 |
| HinP1I | GCGC | 1 cut(s) | 249 |
| HincII | GTYRAC | 1 cut(s) | 376 |
| HindII | GTYRAC | 1 cut(s) | 376 |
| HinfI | GANTC | 2 cut(s) | 52, 233 |
| HpaI | GTTAAC | 1 cut(s) | 376 |
| HpaII | CCGG | 1 cut(s) | 230 |
| Hpy166II | GTNNAC | 3 cut(s) | 17, 358, 376 |
| Hpy188I | TCNGA | 1 cut(s) | 102 |
| Hpy188III | TCNNGA | 4 cut(s) | 46, 137, 204, 230 |
| Hpy8I | GTNNAC | 3 cut(s) | 17, 358, 376 |
| HpyAV | CCTTC | 2 cut(s) | 73, 328 |
| HpyCH4III | ACNGT | 2 cut(s) | 287, 367 |
| HpyCH4IV | ACGT | 2 cut(s) | 159, 378 |
| HpyCH4V | TGCA | 3 cut(s) | 77, 123, 358 |
| HpySE526I | ACGT | 2 cut(s) | 159, 378 |
| Hsp92II | CATG | 2 cut(s) | 140, 157 |
| HspAI | GCGC | 1 cut(s) | 249 |
| Kpn2I | TCCGGA | 1 cut(s) | 229 |
| KpnI | GGTACC | 1 cut(s) | 153 |
| KspAI | GTTAAC | 1 cut(s) | 376 |
| Kzo9I | GATC | 1 cut(s) | 42 |
| LmnI | GCTCC | 1 cut(s) | 271 |
| LpnPI | CCDG | 5 cut(s) | 243, 285, 294, 312, 316 |
| LweI | GCATC | 2 cut(s) | 110, 132 |
| MaeI | CTAG | 2 cut(s) | 117, 204 |
| MaeII | ACGT | 2 cut(s) | 159, 378 |
| MalI | GATC | 1 cut(s) | 44 |
| MboI | GATC | 1 cut(s) | 42 |
| MboII | GAAGA | 2 cut(s) | 61, 202 |
| MhlI | GDGCHC | 1 cut(s) | 360 |
| MluCI | AATT | 3 cut(s) | 8, 144, 238 |
| MlyI | GAGTC | 2 cut(s) | 46, 242 |
| MnlI | CCTC | 3 cut(s) | 254, 262, 364 |
| Mph1103I | ATGCAT | 1 cut(s) | 125 |
| MroI | TCCGGA | 1 cut(s) | 229 |
| MseI | TTAA | 1 cut(s) | 375 |
| MslI | CAYNNNNRTG | 1 cut(s) | 185 |
| MspI | CCGG | 1 cut(s) | 230 |
| MspR9I | CCNGG | 1 cut(s) | 300 |
| MvaI | CCWGG | 1 cut(s) | 300 |
| MvnI | CGCG | 1 cut(s) | 249 |
| NdeII | GATC | 1 cut(s) | 42 |
| NlaIII | CATG | 2 cut(s) | 140, 157 |
| NlaIV | GGNNCC | 2 cut(s) | 151, 217 |
| NsiI | ATGCAT | 1 cut(s) | 125 |
| PagI | TCATGA | 1 cut(s) | 136 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 271 |
| PfoI | TCCNGGA | 1 cut(s) | 298 |
| PleI | GAGTC | 2 cut(s) | 46, 241 |
| PpsI | GAGTC | 2 cut(s) | 46, 241 |
| Psp6I | CCWGG | 1 cut(s) | 298 |
| PspGI | CCWGG | 1 cut(s) | 298 |
| PspN4I | GGNNCC | 2 cut(s) | 151, 217 |
| PspPI | GGNCC | 1 cut(s) | 311 |
| RsaI | GTAC | 1 cut(s) | 151 |
| RsaNI | GTAC | 1 cut(s) | 150 |
| RseI | CAYNNNNRTG | 1 cut(s) | 185 |
| SaqAI | TTAA | 1 cut(s) | 375 |
| Sau3AI | GATC | 1 cut(s) | 42 |
| Sau96I | GGNCC | 1 cut(s) | 311 |
| SchI | GAGTC | 2 cut(s) | 46, 242 |
| ScrFI | CCNGG | 1 cut(s) | 300 |
| SduI | GDGCHC | 1 cut(s) | 360 |
| SetI | ASST | 6 cut(s) | 65, 144, 162, 166, 375, 381 |
| SfaNI | GCATC | 2 cut(s) | 110, 132 |
| SinI | GGWCC | 1 cut(s) | 311 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 185 |
| Sse9I | AATT | 3 cut(s) | 8, 144, 238 |
| SspMI | CTAG | 2 cut(s) | 117, 204 |
| StyD4I | CCNGG | 1 cut(s) | 298 |
| TaaI | ACNGT | 2 cut(s) | 287, 367 |
| TaiI | ACGT | 2 cut(s) | 162, 381 |
| TaqI | TCGA | 1 cut(s) | 45 |
| TasI | AATT | 3 cut(s) | 8, 144, 238 |
| Tru1I | TTAA | 1 cut(s) | 375 |
| Tru9I | TTAA | 1 cut(s) | 375 |
| TscAI | CASTG | 1 cut(s) | 34 |
| TspDTI | ATGAA | 2 cut(s) | 125, 170 |
| TspGWI | ACGGA | 1 cut(s) | 375 |
| TspRI | CASTG | 1 cut(s) | 34 |
| VneI | GTGCAC | 1 cut(s) | 356 |
| VpaK11BI | GGWCC | 1 cut(s) | 311 |
| XapI | RAATTY | 1 cut(s) | 8 |
| XbaI | TCTAGA | 1 cut(s) | 203 |
| XspI | CTAG | 2 cut(s) | 117, 204 |
| Zsp2I | ATGCAT | 1 cut(s) | 125 |