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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 684 |
| AccII | CGCG | 1 cut(s) | 251 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AciI | CCGC | 1 cut(s) | 361 |
| AclWI | GGATC | 2 cut(s) | 551, 621 |
| AcsI | RAATTY | 2 cut(s) | 23, 428 |
| AcyI | GRCGYC | 1 cut(s) | 685 |
| AfaI | GTAC | 2 cut(s) | 248, 535 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 680 |
| AflIII | ACRYGT | 1 cut(s) | 249 |
| AgsI | TTSAA | 2 cut(s) | 376, 722 |
| AjnI | CCWGG | 1 cut(s) | 105 |
| AluBI | AGCT | 3 cut(s) | 161, 562, 572 |
| AluI | AGCT | 3 cut(s) | 161, 562, 572 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AlwI | GGATC | 2 cut(s) | 551, 621 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| ApoI | RAATTY | 2 cut(s) | 23, 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 1 cut(s) | 687 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BaeGI | GKGCMC | 1 cut(s) | 673 |
| BanI | GGYRCC | 1 cut(s) | 684 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 2 cut(s) | 273, 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BccI | CCATC | 3 cut(s) | 92, 342, 496 |
| BciT130I | CCWGG | 1 cut(s) | 107 |
| BciVI | GTATCC | 2 cut(s) | 103, 706 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BfoI | RGCGCY | 1 cut(s) | 688 |
| BfuI | GTATCC | 2 cut(s) | 103, 706 |
| Bme1390I | CCNGG | 1 cut(s) | 107 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmiI | GGNNCC | 2 cut(s) | 654, 686 |
| BmrFI | CCNGG | 1 cut(s) | 107 |
| BmsI | GCATC | 2 cut(s) | 442, 609 |
| BpiI | GAAGAC | 2 cut(s) | 273, 476 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 683, 715 |
| BpuEI | CTTGAG | 1 cut(s) | 227 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaHI | GRCGYC | 1 cut(s) | 685 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 630 |
| BsaWI | WCCGGW | 1 cut(s) | 649 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 680 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseBI | CCWGG | 1 cut(s) | 107 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 1 cut(s) | 630 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 600 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseSI | GKGCMC | 1 cut(s) | 673 |
| Bsh1236I | CGCG | 1 cut(s) | 251 |
| BshNI | GGYRCC | 1 cut(s) | 684 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 650 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 680 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsmI | GAATGC | 1 cut(s) | 179 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 564, 673 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp143I | GATC | 3 cut(s) | 444, 543, 626 |
| BspACI | CCGC | 1 cut(s) | 361 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspFNI | CGCG | 1 cut(s) | 251 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspLI | GGNNCC | 2 cut(s) | 654, 686 |
| BspPI | GGATC | 2 cut(s) | 551, 621 |
| BspT107I | GGYRCC | 1 cut(s) | 684 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 1 cut(s) | 630 |
| BssMI | GATC | 3 cut(s) | 444, 543, 626 |
| BssNI | GRCGYC | 1 cut(s) | 685 |
| Bst2UI | CCWGG | 1 cut(s) | 107 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstACI | GRCGYC | 1 cut(s) | 685 |
| BstDEI | CTNAG | 3 cut(s) | 184, 675, 707 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 678 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 600 |
| BstFNI | CGCG | 1 cut(s) | 251 |
| BstH2I | RGCGCY | 1 cut(s) | 688 |
| BstHHI | GCGC | 1 cut(s) | 687 |
| BstKTI | GATC | 3 cut(s) | 447, 546, 629 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 3 cut(s) | 444, 543, 626 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 691 |
| BstNI | CCWGG | 1 cut(s) | 107 |
| BstSCI | CCNGG | 1 cut(s) | 105 |
| BstSLI | GKGCMC | 1 cut(s) | 673 |
| BstUI | CGCG | 1 cut(s) | 251 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 476 |
| BstX2I | RGATCY | 1 cut(s) | 626 |
| BstYI | RGATCY | 1 cut(s) | 626 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuI | GTATCC | 2 cut(s) | 103, 706 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtgZI | GCGATG | 1 cut(s) | 470 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 600 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 1 cut(s) | 687 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 2 cut(s) | 247, 534 |
| CviAII | CATG | 2 cut(s) | 557, 593 |
| CviJI | RGCY | 8 cut(s) | 48, 95, 124, 129, 161, 280, 562, 572 |
| CviKI_1 | RGCY | 8 cut(s) | 48, 95, 124, 129, 161, 280, 562, 572 |
| CviQI | GTAC | 2 cut(s) | 247, 534 |
| DdeI | CTNAG | 3 cut(s) | 184, 675, 707 |
| DinI | GGCGCC | 1 cut(s) | 686 |
| DpnI | GATC | 3 cut(s) | 446, 545, 628 |
| DpnII | GATC | 3 cut(s) | 444, 543, 626 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 678 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| EcoRII | CCWGG | 1 cut(s) | 105 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| EgeI | GGCGCC | 1 cut(s) | 686 |
| EheI | GGCGCC | 1 cut(s) | 686 |
| FaeI | CATG | 2 cut(s) | 560, 596 |
| FatI | CATG | 2 cut(s) | 556, 592 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FokI | GGATG | 3 cut(s) | 197, 245, 587 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GlaI | GCGC | 1 cut(s) | 686 |
| HaeII | RGCGCY | 1 cut(s) | 688 |
| HapII | CCGG | 1 cut(s) | 650 |
| HhaI | GCGC | 1 cut(s) | 687 |
| Hin1I | GRCGYC | 1 cut(s) | 685 |
| Hin1II | CATG | 2 cut(s) | 560, 596 |
| Hin6I | GCGC | 1 cut(s) | 685 |
| HinP1I | GCGC | 1 cut(s) | 685 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 6 cut(s) | 67, 102, 115, 236, 320, 472 |
| HpaII | CCGG | 1 cut(s) | 650 |
| Hpy188I | TCNGA | 2 cut(s) | 80, 400 |
| Hpy188III | TCNNGA | 6 cut(s) | 51, 71, 119, 332, 557, 650 |
| HpyAV | CCTTC | 3 cut(s) | 270, 493, 749 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyCH4V | TGCA | 1 cut(s) | 497 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 691 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 675, 707 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92I | GRCGYC | 1 cut(s) | 685 |
| Hsp92II | CATG | 2 cut(s) | 560, 596 |
| HspAI | GCGC | 1 cut(s) | 685 |
| KasI | GGCGCC | 1 cut(s) | 684 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| Kzo9I | GATC | 3 cut(s) | 444, 543, 626 |
| LmnI | GCTCC | 1 cut(s) | 569 |
| LweI | GCATC | 2 cut(s) | 442, 609 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 3 cut(s) | 5, 317, 758 |
| MalI | GATC | 3 cut(s) | 446, 545, 628 |
| MboI | GATC | 3 cut(s) | 444, 543, 626 |
| MboII | GAAGA | 4 cut(s) | 275, 278, 481, 622 |
| MflI | RGATCY | 1 cut(s) | 626 |
| MhlI | GDGCHC | 2 cut(s) | 564, 673 |
| MluCI | AATT | 5 cut(s) | 17, 23, 428, 619, 658 |
| MluI | ACGCGT | 1 cut(s) | 249 |
| Mly113I | GGCGCC | 1 cut(s) | 685 |
| MlyI | GAGTC | 2 cut(s) | 314, 466 |
| MmeI | TCCRAC | 1 cut(s) | 103 |
| MnlI | CCTC | 3 cut(s) | 181, 368, 674 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 3 cut(s) | 414, 422, 510 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 605 |
| MspI | CCGG | 1 cut(s) | 650 |
| MspR9I | CCNGG | 1 cut(s) | 107 |
| Mva1269I | GAATGC | 1 cut(s) | 179 |
| MvaI | CCWGG | 1 cut(s) | 107 |
| MvnI | CGCG | 1 cut(s) | 251 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 691 |
| NarI | GGCGCC | 1 cut(s) | 685 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 3 cut(s) | 444, 543, 626 |
| NlaIII | CATG | 2 cut(s) | 560, 596 |
| NlaIV | GGNNCC | 2 cut(s) | 654, 686 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 76 |
| PctI | GAATGC | 1 cut(s) | 179 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 4 cut(s) | 67, 102, 115, 236 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PleI | GAGTC | 2 cut(s) | 314, 466 |
| PluTI | GGCGCC | 1 cut(s) | 688 |
| PpsI | GAGTC | 2 cut(s) | 314, 466 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| Psp6I | CCWGG | 1 cut(s) | 105 |
| PspGI | CCWGG | 1 cut(s) | 105 |
| PspN4I | GGNNCC | 2 cut(s) | 654, 686 |
| PsuI | RGATCY | 1 cut(s) | 626 |
| RsaI | GTAC | 2 cut(s) | 248, 535 |
| RsaNI | GTAC | 2 cut(s) | 247, 534 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 605 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 3 cut(s) | 414, 422, 510 |
| Sau3AI | GATC | 3 cut(s) | 444, 543, 626 |
| SchI | GAGTC | 2 cut(s) | 314, 466 |
| ScrFI | CCNGG | 1 cut(s) | 107 |
| SduI | GDGCHC | 2 cut(s) | 564, 673 |
| SfaNI | GCATC | 2 cut(s) | 442, 609 |
| SfoI | GGCGCC | 1 cut(s) | 686 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 605 |
| SmlI | CTYRAG | 2 cut(s) | 119, 242 |
| SmoI | CTYRAG | 2 cut(s) | 119, 242 |
| Sse9I | AATT | 5 cut(s) | 17, 23, 428, 619, 658 |
| SsiI | CCGC | 1 cut(s) | 361 |
| SspDI | GGCGCC | 1 cut(s) | 684 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 1 cut(s) | 105 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 2 cut(s) | 120, 525 |
| TasI | AATT | 5 cut(s) | 17, 23, 428, 619, 658 |
| TatI | WGTACW | 1 cut(s) | 533 |
| TfiI | GAWTC | 4 cut(s) | 67, 102, 115, 236 |
| Tru1I | TTAA | 3 cut(s) | 414, 422, 510 |
| Tru9I | TTAA | 3 cut(s) | 414, 422, 510 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 3 cut(s) | 272, 276, 545 |
| TspGWI | ACGGA | 2 cut(s) | 556, 619 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 678 |
| XapI | RAATTY | 2 cut(s) | 23, 428 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 2 cut(s) | 126, 338 |