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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 726 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 705 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 736 |
| AccII | CGCG | 1 cut(s) | 150 |
| AciI | CCGC | 2 cut(s) | 132, 615 |
| AclWI | GGATC | 4 cut(s) | 153, 215, 885, 932 |
| AcoI | YGGCCR | 2 cut(s) | 688, 775 |
| AcsI | RAATTY | 4 cut(s) | 23, 307, 607, 733 |
| AcuI | CTGAAG | 1 cut(s) | 74 |
| AcyI | GRCGYC | 1 cut(s) | 1038 |
| AfaI | GTAC | 2 cut(s) | 344, 859 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 378, 736, 900 |
| AgsI | TTSAA | 8 cut(s) | 196, 299, 320, 328, 361, 447, 487, 763 |
| AjiI | CACGTC | 1 cut(s) | 632 |
| AjnI | CCWGG | 1 cut(s) | 777 |
| AluBI | AGCT | 4 cut(s) | 290, 353, 369, 541 |
| AluI | AGCT | 4 cut(s) | 290, 353, 369, 541 |
| Alw21I | GWGCWC | 1 cut(s) | 292 |
| AlwI | GGATC | 4 cut(s) | 153, 215, 885, 932 |
| AoxI | GGCC | 4 cut(s) | 93, 688, 775, 956 |
| ApeKI | GCWGC | 2 cut(s) | 412, 669 |
| ApoI | RAATTY | 4 cut(s) | 23, 307, 607, 733 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 425 |
| AspLEI | GCGC | 1 cut(s) | 152 |
| AspS9I | GGNCC | 3 cut(s) | 67, 740, 956 |
| AsuC2I | CCSGG | 1 cut(s) | 590 |
| AsuHPI | GGTGA | 1 cut(s) | 401 |
| AvaII | GGWCC | 2 cut(s) | 67, 740 |
| BaeGI | GKGCMC | 1 cut(s) | 795 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 452, 485 |
| BalI | TGGCCA | 1 cut(s) | 777 |
| BanII | GRGCYC | 1 cut(s) | 292 |
| BbsI | GAAGAC | 2 cut(s) | 411, 506 |
| Bbv12I | GWGCWC | 1 cut(s) | 292 |
| BbvI | GCAGC | 2 cut(s) | 399, 681 |
| BceAI | ACGGC | 2 cut(s) | 675, 840 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 239, 273 |
| BciT130I | CCWGG | 1 cut(s) | 779 |
| BclI | TGATCA | 1 cut(s) | 928 |
| BcnI | CCSGG | 1 cut(s) | 590 |
| BfaI | CTAG | 2 cut(s) | 416, 896 |
| BisI | GCNGC | 2 cut(s) | 413, 670 |
| BlsI | GCNGC | 2 cut(s) | 414, 671 |
| Bme1390I | CCNGG | 2 cut(s) | 590, 779 |
| Bme18I | GGWCC | 2 cut(s) | 67, 740 |
| BmgBI | CACGTC | 1 cut(s) | 632 |
| BmgT120I | GGNCC | 3 cut(s) | 67, 740, 956 |
| BmiI | GGNNCC | 2 cut(s) | 68, 741 |
| BmrFI | CCNGG | 2 cut(s) | 590, 779 |
| BmrI | ACTGGG | 2 cut(s) | 582, 850 |
| BmsI | GCATC | 3 cut(s) | 64, 143, 267 |
| BmuI | ACTGGG | 2 cut(s) | 582, 850 |
| BpiI | GAAGAC | 2 cut(s) | 411, 506 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 332, 364 |
| Bpu10I | CCTNAGC | 2 cut(s) | 244, 864 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BpuMI | CCSGG | 1 cut(s) | 590 |
| BsaHI | GRCGYC | 1 cut(s) | 1038 |
| BsaJI | CCNNGG | 5 cut(s) | 103, 372, 673, 691, 941 |
| BsaWI | WCCGGW | 1 cut(s) | 44 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 875, 905 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 378, 736, 900 |
| Bse1I | ACTGG | 2 cut(s) | 577, 845 |
| Bse3DI | GCAATG | 2 cut(s) | 631, 750 |
| BseBI | CCWGG | 1 cut(s) | 779 |
| BseDI | CCNNGG | 5 cut(s) | 103, 372, 673, 691, 941 |
| BseGI | GGATG | 2 cut(s) | 134, 277 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 378, 736, 900 |
| BseMI | GCAATG | 2 cut(s) | 631, 750 |
| BseMII | CTCAG | 1 cut(s) | 363 |
| BseNI | ACTGG | 2 cut(s) | 577, 845 |
| BseSI | GKGCMC | 1 cut(s) | 795 |
| BseXI | GCAGC | 2 cut(s) | 399, 681 |
| Bsh1236I | CGCG | 1 cut(s) | 150 |
| BshFI | GGCC | 4 cut(s) | 95, 690, 777, 958 |
| BsiHKAI | GWGCWC | 1 cut(s) | 292 |
| BsiSI | CCGG | 2 cut(s) | 45, 590 |
| BslFI | GGGAC | 2 cut(s) | 753, 1025 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 378, 736, 900 |
| BsmFI | GGGAC | 2 cut(s) | 753, 1025 |
| BsnI | GGCC | 4 cut(s) | 95, 690, 777, 958 |
| Bsp1286I | GDGCHC | 2 cut(s) | 292, 795 |
| Bsp143I | GATC | 6 cut(s) | 145, 162, 220, 877, 928, 937 |
| Bsp19I | CCATGG | 2 cut(s) | 372, 673 |
| BspACI | CCGC | 2 cut(s) | 132, 615 |
| BspANI | GGCC | 4 cut(s) | 95, 690, 777, 958 |
| BspCNI | CTCAG | 1 cut(s) | 362 |
| BspFNI | CGCG | 1 cut(s) | 150 |
| BspLI | GGNNCC | 2 cut(s) | 68, 741 |
| BspPI | GGATC | 4 cut(s) | 153, 215, 885, 932 |
| BsrDI | GCAATG | 2 cut(s) | 631, 750 |
| BsrI | ACTGG | 2 cut(s) | 577, 845 |
| BssECI | CCNNGG | 5 cut(s) | 103, 372, 673, 691, 941 |
| BssMI | GATC | 6 cut(s) | 145, 162, 220, 877, 928, 937 |
| BssNI | GRCGYC | 1 cut(s) | 1038 |
| BssT1I | CCWWGG | 4 cut(s) | 103, 372, 673, 941 |
| Bst2UI | CCWGG | 1 cut(s) | 779 |
| Bst4CI | ACNGT | 2 cut(s) | 214, 334 |
| BstACI | GRCGYC | 1 cut(s) | 1038 |
| BstC8I | GCNNGC | 2 cut(s) | 292, 784 |
| BstDEI | CTNAG | 3 cut(s) | 244, 349, 864 |
| BstDSI | CCRYGG | 3 cut(s) | 372, 673, 691 |
| BstF5I | GGATG | 2 cut(s) | 134, 277 |
| BstFNI | CGCG | 1 cut(s) | 150 |
| BstHHI | GCGC | 1 cut(s) | 152 |
| BstKTI | GATC | 6 cut(s) | 148, 165, 223, 880, 931, 940 |
| BstMBI | GATC | 6 cut(s) | 145, 162, 220, 877, 928, 937 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 621, 783 |
| BstNI | CCWGG | 1 cut(s) | 779 |
| BstNSI | RCATGY | 2 cut(s) | 412, 454 |
| BstSCI | CCNGG | 2 cut(s) | 588, 777 |
| BstSLI | GKGCMC | 1 cut(s) | 795 |
| BstUI | CGCG | 1 cut(s) | 150 |
| BstV1I | GCAGC | 2 cut(s) | 399, 681 |
| BstV2I | GAAGAC | 2 cut(s) | 411, 506 |
| BstX2I | RGATCY | 2 cut(s) | 220, 877 |
| BstYI | RGATCY | 2 cut(s) | 220, 877 |
| BsuRI | GGCC | 4 cut(s) | 95, 690, 777, 958 |
| BtgI | CCRYGG | 3 cut(s) | 372, 673, 691 |
| BtrI | CACGTC | 1 cut(s) | 632 |
| BtsCI | GGATG | 2 cut(s) | 134, 277 |
| BtsIMutI | CAGTG | 3 cut(s) | 210, 339, 838 |
| Cac8I | GCNNGC | 2 cut(s) | 292, 784 |
| CfoI | GCGC | 1 cut(s) | 152 |
| Cfr13I | GGNCC | 3 cut(s) | 67, 740, 956 |
| CseI | GACGC | 2 cut(s) | 675, 1027 |
| Csp6I | GTAC | 2 cut(s) | 343, 858 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 613, 648, 691, 726 |
| CviAII | CATG | 9 cut(s) | 63, 160, 373, 409, 451, 644, 674, 1013, 1024 |
| CviQI | GTAC | 2 cut(s) | 343, 858 |
| DdeI | CTNAG | 3 cut(s) | 244, 349, 864 |
| DpnI | GATC | 6 cut(s) | 147, 164, 222, 879, 930, 939 |
| DpnII | GATC | 6 cut(s) | 145, 162, 220, 877, 928, 937 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 705 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 705 |
| EaeI | YGGCCR | 2 cut(s) | 688, 775 |
| Ecl136II | GAGCTC | 1 cut(s) | 290 |
| Eco130I | CCWWGG | 4 cut(s) | 103, 372, 673, 941 |
| Eco147I | AGGCCT | 1 cut(s) | 95 |
| Eco24I | GRGCYC | 1 cut(s) | 292 |
| Eco47I | GGWCC | 2 cut(s) | 67, 740 |
| Eco53kI | GAGCTC | 1 cut(s) | 290 |
| Eco57I | CTGAAG | 1 cut(s) | 74 |
| EcoICRI | GAGCTC | 1 cut(s) | 290 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 777 |
| EcoT14I | CCWWGG | 4 cut(s) | 103, 372, 673, 941 |
| EcoT38I | GRGCYC | 1 cut(s) | 292 |
| ErhI | CCWWGG | 4 cut(s) | 103, 372, 673, 941 |
| FaeI | CATG | 9 cut(s) | 66, 163, 376, 412, 454, 647, 677, 1016, 1027 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 210, 242 |
| FaqI | GGGAC | 2 cut(s) | 753, 1025 |
| FatI | CATG | 9 cut(s) | 62, 159, 372, 408, 450, 643, 673, 1012, 1023 |
| FauI | CCCGC | 1 cut(s) | 608 |
| FbaI | TGATCA | 1 cut(s) | 928 |
| Fnu4HI | GCNGC | 2 cut(s) | 413, 670 |
| FokI | GGATG | 2 cut(s) | 121, 284 |
| FriOI | GRGCYC | 1 cut(s) | 292 |
| Fsp4HI | GCNGC | 2 cut(s) | 413, 670 |
| FspBI | CTAG | 2 cut(s) | 416, 896 |
| GlaI | GCGC | 1 cut(s) | 151 |
| GluI | GCNGC | 2 cut(s) | 413, 670 |
| HaeIII | GGCC | 4 cut(s) | 95, 690, 777, 958 |
| HapII | CCGG | 2 cut(s) | 45, 590 |
| HgaI | GACGC | 2 cut(s) | 675, 1027 |
| HhaI | GCGC | 1 cut(s) | 152 |
| Hin1I | GRCGYC | 1 cut(s) | 1038 |
| Hin1II | CATG | 9 cut(s) | 66, 163, 376, 412, 454, 647, 677, 1016, 1027 |
| Hin6I | GCGC | 1 cut(s) | 150 |
| HinP1I | GCGC | 1 cut(s) | 150 |
| HinfI | GANTC | 3 cut(s) | 483, 947, 1009 |
| HpaII | CCGG | 2 cut(s) | 45, 590 |
| HphI | GGTGA | 1 cut(s) | 401 |
| Hpy166II | GTNNAC | 2 cut(s) | 695, 860 |
| Hpy188I | TCNGA | 3 cut(s) | 499, 937, 988 |
| Hpy188III | TCNNGA | 6 cut(s) | 185, 320, 328, 361, 473, 487 |
| Hpy8I | GTNNAC | 2 cut(s) | 695, 860 |
| HpyAV | CCTTC | 4 cut(s) | 116, 182, 331, 633 |
| HpyCH4III | ACNGT | 2 cut(s) | 214, 334 |
| HpyCH4IV | ACGT | 3 cut(s) | 441, 631, 924 |
| HpyCH4V | TGCA | 1 cut(s) | 460 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 621, 783 |
| HpyF3I | CTNAG | 3 cut(s) | 244, 349, 864 |
| HpySE526I | ACGT | 3 cut(s) | 441, 631, 924 |
| Hsp92I | GRCGYC | 1 cut(s) | 1038 |
| Hsp92II | CATG | 9 cut(s) | 66, 163, 376, 412, 454, 647, 677, 1016, 1027 |
| HspAI | GCGC | 1 cut(s) | 150 |
| Ksp22I | TGATCA | 1 cut(s) | 928 |
| Kzo9I | GATC | 6 cut(s) | 145, 162, 220, 877, 928, 937 |
| LmnI | GCTCC | 2 cut(s) | 285, 374 |
| Lsp1109I | GCAGC | 2 cut(s) | 399, 681 |
| LweI | GCATC | 3 cut(s) | 64, 143, 267 |
| MaeI | CTAG | 2 cut(s) | 416, 896 |
| MaeII | ACGT | 3 cut(s) | 441, 631, 924 |
| MaeIII | GTNAC | 1 cut(s) | 576 |
| MalI | GATC | 6 cut(s) | 147, 164, 222, 879, 930, 939 |
| MboI | GATC | 6 cut(s) | 145, 162, 220, 877, 928, 937 |
| MboII | GAAGA | 4 cut(s) | 80, 161, 416, 506 |
| MflI | RGATCY | 2 cut(s) | 220, 877 |
| MhlI | GDGCHC | 2 cut(s) | 292, 795 |
| MlsI | TGGCCA | 1 cut(s) | 777 |
| MluCI | AATT | 9 cut(s) | 17, 23, 52, 307, 500, 607, 733, 811, 1051 |
| MluNI | TGGCCA | 1 cut(s) | 777 |
| MlyI | GAGTC | 2 cut(s) | 956, 1018 |
| MmeI | TCCRAC | 1 cut(s) | 593 |
| MnlI | CCTC | 6 cut(s) | 106, 218, 613, 629, 894, 901 |
| Mox20I | TGGCCA | 1 cut(s) | 777 |
| MroXI | GAANNNNTTC | 1 cut(s) | 425 |
| MscI | TGGCCA | 1 cut(s) | 777 |
| MslI | CAYNNNNRTG | 2 cut(s) | 822, 1017 |
| Msp20I | TGGCCA | 1 cut(s) | 777 |
| MspI | CCGG | 2 cut(s) | 45, 590 |
| MspR9I | CCNGG | 2 cut(s) | 590, 779 |
| MvaI | CCWGG | 1 cut(s) | 779 |
| MvnI | CGCG | 1 cut(s) | 150 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 621, 783 |
| NciI | CCSGG | 1 cut(s) | 590 |
| NcoI | CCATGG | 2 cut(s) | 372, 673 |
| NdeII | GATC | 6 cut(s) | 145, 162, 220, 877, 928, 937 |
| NlaIII | CATG | 9 cut(s) | 66, 163, 376, 412, 454, 647, 677, 1016, 1027 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 741 |
| NmeAIII | GCCGAG | 2 cut(s) | 103, 274 |
| NmuCI | GTSAC | 1 cut(s) | 576 |
| NspI | RCATGY | 2 cut(s) | 412, 454 |
| PceI | AGGCCT | 1 cut(s) | 95 |
| PdmI | GAANNNNTTC | 1 cut(s) | 425 |
| PfeI | GAWTC | 1 cut(s) | 483 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 736 |
| PfoI | TCCNGGA | 1 cut(s) | 588 |
| PkrI | GCNGC | 2 cut(s) | 414, 671 |
| PleI | GAGTC | 2 cut(s) | 955, 1017 |
| PpsI | GAGTC | 2 cut(s) | 955, 1017 |
| PpuMI | RGGWCCY | 1 cut(s) | 67 |
| PsiI | TTATAA | 1 cut(s) | 726 |
| Psp124BI | GAGCTC | 1 cut(s) | 292 |
| Psp5II | RGGWCCY | 1 cut(s) | 67 |
| Psp6I | CCWGG | 1 cut(s) | 777 |
| PspGI | CCWGG | 1 cut(s) | 777 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 741 |
| PspPI | GGNCC | 3 cut(s) | 67, 740, 956 |
| PspPPI | RGGWCCY | 1 cut(s) | 67 |
| PsuI | RGATCY | 2 cut(s) | 220, 877 |
| RsaI | GTAC | 2 cut(s) | 344, 859 |
| RsaNI | GTAC | 2 cut(s) | 343, 858 |
| RseI | CAYNNNNRTG | 2 cut(s) | 822, 1017 |
| SacI | GAGCTC | 1 cut(s) | 292 |
| SatI | GCNGC | 2 cut(s) | 413, 670 |
| Sau3AI | GATC | 6 cut(s) | 145, 162, 220, 877, 928, 937 |
| Sau96I | GGNCC | 3 cut(s) | 67, 740, 956 |
| SchI | GAGTC | 2 cut(s) | 956, 1018 |
| ScrFI | CCNGG | 2 cut(s) | 590, 779 |
| SduI | GDGCHC | 2 cut(s) | 292, 795 |
| SfaNI | GCATC | 3 cut(s) | 64, 143, 267 |
| SinI | GGWCC | 2 cut(s) | 67, 740 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 822, 1017 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 9 cut(s) | 17, 23, 52, 307, 500, 607, 733, 811, 1051 |
| SseBI | AGGCCT | 1 cut(s) | 95 |
| SsiI | CCGC | 2 cut(s) | 132, 615 |
| SspI | AATATT | 2 cut(s) | 112, 494 |
| SspMI | CTAG | 2 cut(s) | 416, 896 |
| SstI | GAGCTC | 1 cut(s) | 292 |
| StuI | AGGCCT | 1 cut(s) | 95 |
| StyD4I | CCNGG | 2 cut(s) | 588, 777 |
| StyI | CCWWGG | 4 cut(s) | 103, 372, 673, 941 |
| TaaI | ACNGT | 2 cut(s) | 214, 334 |
| TaiI | ACGT | 3 cut(s) | 444, 634, 927 |
| TaqI | TCGA | 2 cut(s) | 36, 305 |
| TasI | AATT | 9 cut(s) | 17, 23, 52, 307, 500, 607, 733, 811, 1051 |
| TatI | WGTACW | 1 cut(s) | 342 |
| TfiI | GAWTC | 1 cut(s) | 483 |
| TscAI | CASTG | 3 cut(s) | 217, 339, 845 |
| TseFI | GTSAC | 1 cut(s) | 576 |
| TseI | GCWGC | 2 cut(s) | 412, 669 |
| Tsp45I | GTSAC | 1 cut(s) | 576 |
| TspDTI | ATGAA | 3 cut(s) | 51, 216, 819 |
| TspRI | CASTG | 3 cut(s) | 217, 339, 845 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 736 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 740 |
| XapI | RAATTY | 4 cut(s) | 23, 307, 607, 733 |
| XceI | RCATGY | 2 cut(s) | 412, 454 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 231 |
| XmnI | GAANNNNTTC | 1 cut(s) | 425 |
| XspI | CTAG | 2 cut(s) | 416, 896 |