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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 158, 486, 531 |
| Acc36I | ACCTGC | 1 cut(s) | 621 |
| AccB1I | GGYRCC | 3 cut(s) | 121, 692, 713 |
| AccBSI | CCGCTC | 1 cut(s) | 559 |
| AciI | CCGC | 4 cut(s) | 85, 559, 607, 876 |
| AclWI | GGATC | 1 cut(s) | 802 |
| AcvI | CACGTG | 2 cut(s) | 650, 668 |
| AcyI | GRCGYC | 2 cut(s) | 190, 693 |
| AdeI | CACNNNGTG | 1 cut(s) | 653 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 64, 545, 546, 616, 669, 727 |
| AflIII | ACRYGT | 2 cut(s) | 665, 777 |
| AgsI | TTSAA | 6 cut(s) | 96, 307, 314, 343, 492, 847 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 410 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AluBI | AGCT | 6 cut(s) | 247, 371, 396, 430, 452, 851 |
| AluI | AGCT | 6 cut(s) | 247, 371, 396, 430, 452, 851 |
| Alw21I | GWGCWC | 1 cut(s) | 867 |
| Alw26I | GTCTC | 1 cut(s) | 813 |
| Alw44I | GTGCAC | 1 cut(s) | 863 |
| AlwI | GGATC | 1 cut(s) | 802 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| AoxI | GGCC | 1 cut(s) | 494 |
| ApaLI | GTGCAC | 1 cut(s) | 863 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 196, 228 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspA2I | CCTAGG | 1 cut(s) | 725 |
| AspLEI | GCGC | 5 cut(s) | 259, 270, 330, 552, 695 |
| AspS9I | GGNCC | 2 cut(s) | 495, 596 |
| AsuHPI | GGTGA | 1 cut(s) | 823 |
| AvaII | GGWCC | 1 cut(s) | 596 |
| AvrII | CCTAGG | 1 cut(s) | 725 |
| BaeGI | GKGCMC | 1 cut(s) | 867 |
| BanI | GGYRCC | 3 cut(s) | 121, 692, 713 |
| BauI | CACGAG | 2 cut(s) | 473, 702 |
| BbrPI | CACGTG | 2 cut(s) | 650, 668 |
| Bbv12I | GWGCWC | 1 cut(s) | 867 |
| BccI | CCATC | 1 cut(s) | 834 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BcoDI | GTCTC | 1 cut(s) | 813 |
| BfaI | CTAG | 3 cut(s) | 15, 260, 726 |
| BfoI | RGCGCY | 3 cut(s) | 260, 271, 696 |
| BfuAI | ACCTGC | 1 cut(s) | 621 |
| BisI | GCNGC | 1 cut(s) | 876 |
| BlnI | CCTAGG | 1 cut(s) | 725 |
| BlsI | GCNGC | 1 cut(s) | 877 |
| Bme1390I | CCNGG | 1 cut(s) | 119 |
| Bme18I | GGWCC | 1 cut(s) | 596 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 2 cut(s) | 495, 596 |
| BmiI | GGNNCC | 5 cut(s) | 123, 563, 597, 694, 715 |
| BmrFI | CCNGG | 1 cut(s) | 119 |
| BmsI | GCATC | 3 cut(s) | 174, 226, 862 |
| BoxI | GACNNNNGTC | 1 cut(s) | 780 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| Bsa29I | ATCGAT | 1 cut(s) | 787 |
| BsaAI | YACGTR | 2 cut(s) | 650, 668 |
| BsaBI | GATNNNNATC | 1 cut(s) | 793 |
| BsaHI | GRCGYC | 2 cut(s) | 190, 693 |
| BsaJI | CCNNGG | 2 cut(s) | 696, 725 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 209, 239, 664, 694, 706, 736 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 64, 545, 546, 616, 669, 727 |
| Bse3DI | GCAATG | 2 cut(s) | 283, 664 |
| Bse8I | GATNNNNATC | 1 cut(s) | 793 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseCI | ATCGAT | 1 cut(s) | 787 |
| BseDI | CCNNGG | 2 cut(s) | 696, 725 |
| BseGI | GGATG | 4 cut(s) | 241, 584, 822, 877 |
| BseJI | GATNNNNATC | 1 cut(s) | 793 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 64, 545, 546, 616, 669, 727 |
| BseMI | GCAATG | 2 cut(s) | 283, 664 |
| BseMII | CTCAG | 3 cut(s) | 63, 223, 444 |
| BseSI | GKGCMC | 1 cut(s) | 867 |
| BsgI | GTGCAG | 1 cut(s) | 660 |
| BshFI | GGCC | 1 cut(s) | 496 |
| BshNI | GGYRCC | 3 cut(s) | 121, 692, 713 |
| BshVI | ATCGAT | 1 cut(s) | 787 |
| BsiHKAI | GWGCWC | 1 cut(s) | 867 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 64, 545, 546, 616, 669, 727 |
| BsmAI | GTCTC | 1 cut(s) | 813 |
| BsnI | GGCC | 1 cut(s) | 496 |
| Bsp1286I | GDGCHC | 1 cut(s) | 867 |
| Bsp143I | GATC | 2 cut(s) | 228, 794 |
| Bsp19I | CCATGG | 1 cut(s) | 696 |
| BspACI | CCGC | 4 cut(s) | 85, 559, 607, 876 |
| BspANI | GGCC | 1 cut(s) | 496 |
| BspCNI | CTCAG | 3 cut(s) | 62, 222, 445 |
| BspDI | ATCGAT | 1 cut(s) | 787 |
| BspHI | TCATGA | 1 cut(s) | 517 |
| BspLI | GGNNCC | 5 cut(s) | 123, 563, 597, 694, 715 |
| BspMI | ACCTGC | 1 cut(s) | 621 |
| BspPI | GGATC | 1 cut(s) | 802 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT107I | GGYRCC | 3 cut(s) | 121, 692, 713 |
| BsrBI | CCGCTC | 1 cut(s) | 559 |
| BsrDI | GCAATG | 2 cut(s) | 283, 664 |
| BssECI | CCNNGG | 2 cut(s) | 696, 725 |
| BssMI | GATC | 2 cut(s) | 228, 794 |
| BssNI | GRCGYC | 2 cut(s) | 190, 693 |
| BssSI | CACGAG | 2 cut(s) | 473, 702 |
| BssT1I | CCWWGG | 2 cut(s) | 696, 725 |
| Bst2BI | CACGAG | 2 cut(s) | 473, 702 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 1 cut(s) | 62 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstACI | GRCGYC | 2 cut(s) | 190, 693 |
| BstBAI | YACGTR | 2 cut(s) | 650, 668 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 3 cut(s) | 49, 209, 453 |
| BstDSI | CCRYGG | 1 cut(s) | 696 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 4 cut(s) | 241, 584, 822, 877 |
| BstH2I | RGCGCY | 3 cut(s) | 260, 271, 696 |
| BstHHI | GCGC | 5 cut(s) | 259, 270, 330, 552, 695 |
| BstKTI | GATC | 2 cut(s) | 231, 797 |
| BstMAI | GTCTC | 1 cut(s) | 813 |
| BstMBI | GATC | 2 cut(s) | 228, 794 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 265, 556 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstNSI | RCATGY | 3 cut(s) | 167, 746, 781 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 780 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 1 cut(s) | 117 |
| BstSLI | GKGCMC | 1 cut(s) | 867 |
| Bsu15I | ATCGAT | 1 cut(s) | 787 |
| BsuRI | GGCC | 1 cut(s) | 496 |
| BsuTUI | ATCGAT | 1 cut(s) | 787 |
| BtgI | CCRYGG | 1 cut(s) | 696 |
| BtsCI | GGATG | 4 cut(s) | 241, 584, 822, 877 |
| BveI | ACCTGC | 1 cut(s) | 621 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CciI | TCATGA | 1 cut(s) | 517 |
| CfoI | GCGC | 5 cut(s) | 259, 270, 330, 552, 695 |
| Cfr13I | GGNCC | 2 cut(s) | 495, 596 |
| ClaI | ATCGAT | 1 cut(s) | 787 |
| CseI | GACGC | 1 cut(s) | 198 |
| CviAII | CATG | 8 cut(s) | 164, 388, 461, 518, 689, 697, 743, 778 |
| CviJI | RGCY | 9 cut(s) | 48, 247, 371, 396, 430, 452, 496, 701, 851 |
| CviKI_1 | RGCY | 9 cut(s) | 48, 247, 371, 396, 430, 452, 496, 701, 851 |
| DdeI | CTNAG | 3 cut(s) | 49, 209, 453 |
| DinI | GGCGCC | 1 cut(s) | 694 |
| DpnI | GATC | 2 cut(s) | 230, 796 |
| DpnII | GATC | 2 cut(s) | 228, 794 |
| DraIII | CACNNNGTG | 1 cut(s) | 653 |
| DriI | GACNNNNNGTC | 1 cut(s) | 410 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 410 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco130I | CCWWGG | 2 cut(s) | 696, 725 |
| Eco47I | GGWCC | 1 cut(s) | 596 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco72I | CACGTG | 2 cut(s) | 650, 668 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| EcoT14I | CCWWGG | 2 cut(s) | 696, 725 |
| EgeI | GGCGCC | 1 cut(s) | 694 |
| EheI | GGCGCC | 1 cut(s) | 694 |
| ErhI | CCWWGG | 2 cut(s) | 696, 725 |
| FaeI | CATG | 8 cut(s) | 167, 391, 464, 521, 692, 700, 746, 781 |
| FatI | CATG | 8 cut(s) | 163, 387, 460, 517, 688, 696, 742, 777 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 876 |
| FokI | GGATG | 4 cut(s) | 248, 591, 809, 884 |
| Fsp4HI | GCNGC | 1 cut(s) | 876 |
| FspBI | CTAG | 3 cut(s) | 15, 260, 726 |
| GlaI | GCGC | 5 cut(s) | 258, 269, 329, 551, 694 |
| GluI | GCNGC | 1 cut(s) | 876 |
| HaeII | RGCGCY | 3 cut(s) | 260, 271, 696 |
| HaeIII | GGCC | 1 cut(s) | 496 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 5 cut(s) | 259, 270, 330, 552, 695 |
| Hin1I | GRCGYC | 2 cut(s) | 190, 693 |
| Hin1II | CATG | 8 cut(s) | 167, 391, 464, 521, 692, 700, 746, 781 |
| Hin6I | GCGC | 5 cut(s) | 257, 268, 328, 550, 693 |
| HinP1I | GCGC | 5 cut(s) | 257, 268, 328, 550, 693 |
| HinfI | GANTC | 4 cut(s) | 38, 133, 287, 644 |
| HphI | GGTGA | 1 cut(s) | 823 |
| Hpy166II | GTNNAC | 2 cut(s) | 404, 865 |
| Hpy188I | TCNGA | 1 cut(s) | 52 |
| Hpy188III | TCNNGA | 3 cut(s) | 181, 475, 518 |
| Hpy8I | GTNNAC | 2 cut(s) | 404, 865 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 4 cut(s) | 301, 301, 614, 797 |
| HpyCH4III | ACNGT | 1 cut(s) | 62 |
| HpyCH4IV | ACGT | 2 cut(s) | 649, 667 |
| HpyCH4V | TGCA | 5 cut(s) | 239, 536, 641, 746, 865 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 265, 556 |
| HpyF3I | CTNAG | 3 cut(s) | 49, 209, 453 |
| HpySE526I | ACGT | 2 cut(s) | 649, 667 |
| Hsp92I | GRCGYC | 2 cut(s) | 190, 693 |
| Hsp92II | CATG | 8 cut(s) | 167, 391, 464, 521, 692, 700, 746, 781 |
| HspAI | GCGC | 5 cut(s) | 257, 268, 328, 550, 693 |
| KasI | GGCGCC | 1 cut(s) | 692 |
| Kzo9I | GATC | 2 cut(s) | 228, 794 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| LmnI | GCTCC | 1 cut(s) | 556 |
| LpnPI | CCDG | 7 cut(s) | 30, 104, 131, 143, 312, 423, 616 |
| LweI | GCATC | 3 cut(s) | 174, 226, 862 |
| MaeI | CTAG | 3 cut(s) | 15, 260, 726 |
| MaeII | ACGT | 2 cut(s) | 649, 667 |
| MaeIII | GTNAC | 2 cut(s) | 67, 412 |
| MalI | GATC | 2 cut(s) | 230, 796 |
| MbiI | CCGCTC | 1 cut(s) | 559 |
| MboI | GATC | 2 cut(s) | 228, 794 |
| MboII | GAAGA | 2 cut(s) | 275, 365 |
| MhlI | GDGCHC | 1 cut(s) | 867 |
| MluCI | AATT | 5 cut(s) | 361, 481, 487, 526, 752 |
| Mly113I | GGCGCC | 1 cut(s) | 693 |
| MlyI | GAGTC | 1 cut(s) | 32 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MseI | TTAA | 1 cut(s) | 755 |
| MslI | CAYNNNNRTG | 3 cut(s) | 473, 789, 870 |
| MspR9I | CCNGG | 1 cut(s) | 119 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 265, 556 |
| NarI | GGCGCC | 1 cut(s) | 693 |
| NcoI | CCATGG | 1 cut(s) | 696 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 2 cut(s) | 228, 794 |
| NlaIII | CATG | 8 cut(s) | 167, 391, 464, 521, 692, 700, 746, 781 |
| NlaIV | GGNNCC | 5 cut(s) | 123, 563, 597, 694, 715 |
| NmuCI | GTSAC | 1 cut(s) | 412 |
| NspI | RCATGY | 3 cut(s) | 167, 746, 781 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 517 |
| PciI | ACATGT | 1 cut(s) | 777 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PfeI | GAWTC | 3 cut(s) | 133, 287, 644 |
| PkrI | GCNGC | 1 cut(s) | 877 |
| PleI | GAGTC | 1 cut(s) | 32 |
| PluTI | GGCGCC | 1 cut(s) | 696 |
| PmaCI | CACGTG | 2 cut(s) | 650, 668 |
| PmlI | CACGTG | 2 cut(s) | 650, 668 |
| PpsI | GAGTC | 1 cut(s) | 32 |
| Ppu21I | YACGTR | 2 cut(s) | 650, 668 |
| PscI | ACATGT | 1 cut(s) | 777 |
| PshAI | GACNNNNGTC | 1 cut(s) | 780 |
| PsiI | TTATAA | 3 cut(s) | 158, 486, 531 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspCI | CACGTG | 2 cut(s) | 650, 668 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 5 cut(s) | 123, 563, 597, 694, 715 |
| PspPI | GGNCC | 2 cut(s) | 495, 596 |
| RseI | CAYNNNNRTG | 3 cut(s) | 473, 789, 870 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| SaqAI | TTAA | 1 cut(s) | 755 |
| SatI | GCNGC | 1 cut(s) | 876 |
| Sau3AI | GATC | 2 cut(s) | 228, 794 |
| Sau96I | GGNCC | 2 cut(s) | 495, 596 |
| SchI | GAGTC | 1 cut(s) | 32 |
| ScrFI | CCNGG | 1 cut(s) | 119 |
| SduI | GDGCHC | 1 cut(s) | 867 |
| SfaNI | GCATC | 3 cut(s) | 174, 226, 862 |
| SfoI | GGCGCC | 1 cut(s) | 694 |
| SinI | GGWCC | 1 cut(s) | 596 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 473, 789, 870 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 5 cut(s) | 361, 481, 487, 526, 752 |
| SsiI | CCGC | 4 cut(s) | 85, 559, 607, 876 |
| SspDI | GGCGCC | 1 cut(s) | 692 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 3 cut(s) | 15, 260, 726 |
| StyD4I | CCNGG | 1 cut(s) | 117 |
| StyI | CCWWGG | 2 cut(s) | 696, 725 |
| TaaI | ACNGT | 1 cut(s) | 62 |
| TaiI | ACGT | 2 cut(s) | 652, 670 |
| TaqI | TCGA | 3 cut(s) | 5, 227, 787 |
| TasI | AATT | 5 cut(s) | 361, 481, 487, 526, 752 |
| TauI | GCSGC | 1 cut(s) | 878 |
| TfiI | GAWTC | 3 cut(s) | 133, 287, 644 |
| Tru1I | TTAA | 1 cut(s) | 755 |
| Tru9I | TTAA | 1 cut(s) | 755 |
| TseFI | GTSAC | 1 cut(s) | 412 |
| Tsp45I | GTSAC | 1 cut(s) | 412 |
| TspDTI | ATGAA | 4 cut(s) | 24, 413, 506, 873 |
| VneI | GTGCAC | 1 cut(s) | 863 |
| VpaK11BI | GGWCC | 1 cut(s) | 596 |
| XceI | RCATGY | 3 cut(s) | 167, 746, 781 |
| XmaJI | CCTAGG | 1 cut(s) | 725 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 3 cut(s) | 15, 260, 726 |