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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 119 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 58 |
| AatII | GACGTC | 2 cut(s) | 18, 56 |
| Acc36I | ACCTGC | 1 cut(s) | 119 |
| AccB1I | GGYRCC | 1 cut(s) | 695 |
| AccII | CGCG | 1 cut(s) | 365 |
| AccIII | TCCGGA | 1 cut(s) | 770 |
| AciI | CCGC | 3 cut(s) | 4, 114, 487 |
| AclWI | GGATC | 1 cut(s) | 389 |
| AcoI | YGGCCR | 1 cut(s) | 152 |
| AcsI | RAATTY | 1 cut(s) | 554 |
| AcyI | GRCGYC | 2 cut(s) | 15, 53 |
| AfaI | GTAC | 2 cut(s) | 380, 510 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 256, 388 |
| AgsI | TTSAA | 4 cut(s) | 189, 293, 502, 736 |
| AjiI | CACGTC | 3 cut(s) | 84, 103, 262 |
| AluBI | AGCT | 6 cut(s) | 216, 281, 305, 326, 688, 710 |
| AluI | AGCT | 6 cut(s) | 216, 281, 305, 326, 688, 710 |
| Alw26I | GTCTC | 2 cut(s) | 224, 622 |
| AlwI | GGATC | 1 cut(s) | 389 |
| Aor13HI | TCCGGA | 1 cut(s) | 770 |
| AoxI | GGCC | 2 cut(s) | 5, 152 |
| ApeKI | GCWGC | 2 cut(s) | 96, 281 |
| ApoI | RAATTY | 1 cut(s) | 554 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 759 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 531 |
| AspLEI | GCGC | 2 cut(s) | 242, 367 |
| AspS9I | GGNCC | 1 cut(s) | 6 |
| AsuC2I | CCSGG | 2 cut(s) | 93, 164 |
| BanI | GGYRCC | 1 cut(s) | 695 |
| BbsI | GAAGAC | 1 cut(s) | 602 |
| BbvI | GCAGC | 2 cut(s) | 108, 268 |
| BccI | CCATC | 2 cut(s) | 468, 544 |
| BciVI | GTATCC | 1 cut(s) | 239 |
| BcnI | CCSGG | 2 cut(s) | 93, 164 |
| BcoDI | GTCTC | 2 cut(s) | 224, 622 |
| BfaI | CTAG | 3 cut(s) | 227, 663, 750 |
| BfuAI | ACCTGC | 1 cut(s) | 119 |
| BfuI | GTATCC | 1 cut(s) | 239 |
| BisI | GCNGC | 3 cut(s) | 5, 97, 282 |
| BlsI | GCNGC | 3 cut(s) | 6, 98, 283 |
| Bme1390I | CCNGG | 2 cut(s) | 93, 164 |
| BmgBI | CACGTC | 3 cut(s) | 84, 103, 262 |
| BmgT120I | GGNCC | 1 cut(s) | 6 |
| BmiI | GGNNCC | 1 cut(s) | 697 |
| BmrFI | CCNGG | 2 cut(s) | 93, 164 |
| BmsI | GCATC | 3 cut(s) | 43, 79, 678 |
| BpiI | GAAGAC | 1 cut(s) | 602 |
| BpuMI | CCSGG | 2 cut(s) | 93, 164 |
| BsaBI | GATNNNNATC | 1 cut(s) | 587 |
| BsaHI | GRCGYC | 2 cut(s) | 15, 53 |
| BsaWI | WCCGGW | 1 cut(s) | 770 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 256, 388 |
| Bse1I | ACTGG | 3 cut(s) | 38, 63, 755 |
| Bse8I | GATNNNNATC | 1 cut(s) | 587 |
| BseAI | TCCGGA | 1 cut(s) | 770 |
| BseGI | GGATG | 2 cut(s) | 34, 198 |
| BseJI | GATNNNNATC | 1 cut(s) | 587 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 256, 388 |
| BseNI | ACTGG | 3 cut(s) | 38, 63, 755 |
| BseRI | GAGGAG | 1 cut(s) | 261 |
| BseXI | GCAGC | 2 cut(s) | 108, 268 |
| Bsh1236I | CGCG | 1 cut(s) | 365 |
| BshFI | GGCC | 2 cut(s) | 7, 154 |
| BshNI | GGYRCC | 1 cut(s) | 695 |
| BsiSI | CCGG | 4 cut(s) | 93, 151, 164, 771 |
| BslFI | GGGAC | 1 cut(s) | 272 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 256, 388 |
| BsmAI | GTCTC | 2 cut(s) | 224, 622 |
| BsmBI | CGTCTC | 1 cut(s) | 622 |
| BsmFI | GGGAC | 1 cut(s) | 272 |
| BsnI | GGCC | 2 cut(s) | 7, 154 |
| Bsp13I | TCCGGA | 1 cut(s) | 770 |
| Bsp143I | GATC | 2 cut(s) | 394, 588 |
| BspACI | CCGC | 3 cut(s) | 4, 114, 487 |
| BspANI | GGCC | 2 cut(s) | 7, 154 |
| BspEI | TCCGGA | 1 cut(s) | 770 |
| BspFNI | CGCG | 1 cut(s) | 365 |
| BspHI | TCATGA | 2 cut(s) | 342, 682 |
| BspLI | GGNNCC | 1 cut(s) | 697 |
| BspMI | ACCTGC | 1 cut(s) | 119 |
| BspPI | GGATC | 1 cut(s) | 389 |
| BspT107I | GGYRCC | 1 cut(s) | 695 |
| BsrI | ACTGG | 3 cut(s) | 38, 63, 755 |
| BssMI | GATC | 2 cut(s) | 394, 588 |
| BssNI | GRCGYC | 2 cut(s) | 15, 53 |
| BstACI | GRCGYC | 2 cut(s) | 15, 53 |
| BstC8I | GCNNGC | 1 cut(s) | 23 |
| BstDEI | CTNAG | 1 cut(s) | 306 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 386 |
| BstF5I | GGATG | 2 cut(s) | 34, 198 |
| BstFNI | CGCG | 1 cut(s) | 365 |
| BstHHI | GCGC | 2 cut(s) | 242, 367 |
| BstKTI | GATC | 2 cut(s) | 397, 591 |
| BstMAI | GTCTC | 2 cut(s) | 224, 622 |
| BstMBI | GATC | 2 cut(s) | 394, 588 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 31, 86, 302, 323 |
| BstSCI | CCNGG | 2 cut(s) | 91, 162 |
| BstUI | CGCG | 1 cut(s) | 365 |
| BstV1I | GCAGC | 2 cut(s) | 108, 268 |
| BstV2I | GAAGAC | 1 cut(s) | 602 |
| BstX2I | RGATCY | 1 cut(s) | 394 |
| BstYI | RGATCY | 1 cut(s) | 394 |
| BsuI | GTATCC | 1 cut(s) | 239 |
| BsuRI | GGCC | 2 cut(s) | 7, 154 |
| BtrI | CACGTC | 3 cut(s) | 84, 103, 262 |
| BtsCI | GGATG | 2 cut(s) | 34, 198 |
| BtsIMutI | CAGTG | 3 cut(s) | 9, 573, 762 |
| BveI | ACCTGC | 1 cut(s) | 119 |
| Cac8I | GCNNGC | 1 cut(s) | 23 |
| CciI | TCATGA | 2 cut(s) | 342, 682 |
| CfoI | GCGC | 2 cut(s) | 242, 367 |
| Cfr13I | GGNCC | 1 cut(s) | 6 |
| CseI | GACGC | 3 cut(s) | 48, 371, 675 |
| Csp6I | GTAC | 2 cut(s) | 379, 509 |
| CviAII | CATG | 3 cut(s) | 343, 683, 700 |
| CviQI | GTAC | 2 cut(s) | 379, 509 |
| DdeI | CTNAG | 1 cut(s) | 306 |
| DpnI | GATC | 2 cut(s) | 396, 590 |
| DpnII | GATC | 2 cut(s) | 394, 588 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 58 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 58 |
| EaeI | YGGCCR | 1 cut(s) | 152 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 386 |
| EcoRI | GAATTC | 1 cut(s) | 554 |
| Esp3I | CGTCTC | 1 cut(s) | 622 |
| FaeI | CATG | 3 cut(s) | 346, 686, 703 |
| FaiI | YATR | 9 cut(s) | 344, 356, 409, 480, 548, 684, 701, 728, 744 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 200, 232 |
| FaqI | GGGAC | 1 cut(s) | 272 |
| FatI | CATG | 3 cut(s) | 342, 682, 699 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 97, 282 |
| FokI | GGATG | 2 cut(s) | 21, 205 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 97, 282 |
| FspBI | CTAG | 3 cut(s) | 227, 663, 750 |
| GlaI | GCGC | 2 cut(s) | 241, 366 |
| GluI | GCNGC | 3 cut(s) | 5, 97, 282 |
| HaeIII | GGCC | 2 cut(s) | 7, 154 |
| HapII | CCGG | 4 cut(s) | 93, 151, 164, 771 |
| HgaI | GACGC | 3 cut(s) | 48, 371, 675 |
| HhaI | GCGC | 2 cut(s) | 242, 367 |
| Hin1I | GRCGYC | 2 cut(s) | 15, 53 |
| Hin1II | CATG | 3 cut(s) | 346, 686, 703 |
| Hin6I | GCGC | 2 cut(s) | 240, 365 |
| HinP1I | GCGC | 2 cut(s) | 240, 365 |
| HincII | GTYRAC | 3 cut(s) | 106, 119, 130 |
| HindII | GTYRAC | 3 cut(s) | 106, 119, 130 |
| HinfI | GANTC | 4 cut(s) | 446, 598, 762, 774 |
| HpaII | CCGG | 4 cut(s) | 93, 151, 164, 771 |
| Hpy166II | GTNNAC | 4 cut(s) | 106, 119, 130, 563 |
| Hpy188I | TCNGA | 4 cut(s) | 51, 75, 178, 526 |
| Hpy188III | TCNNGA | 7 cut(s) | 169, 343, 458, 592, 683, 750, 771 |
| Hpy8I | GTNNAC | 4 cut(s) | 106, 119, 130, 563 |
| HpyAV | CCTTC | 1 cut(s) | 619 |
| HpyCH4IV | ACGT | 7 cut(s) | 15, 53, 83, 102, 261, 438, 705 |
| HpyCH4V | TGCA | 1 cut(s) | 623 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 31, 86, 302, 323 |
| HpyF3I | CTNAG | 1 cut(s) | 306 |
| HpySE526I | ACGT | 7 cut(s) | 15, 53, 83, 102, 261, 438, 705 |
| Hsp92I | GRCGYC | 2 cut(s) | 15, 53 |
| Hsp92II | CATG | 3 cut(s) | 346, 686, 703 |
| HspAI | GCGC | 2 cut(s) | 240, 365 |
| Kpn2I | TCCGGA | 1 cut(s) | 770 |
| Kzo9I | GATC | 2 cut(s) | 394, 588 |
| LmnI | GCTCC | 1 cut(s) | 372 |
| Lsp1109I | GCAGC | 2 cut(s) | 108, 268 |
| LweI | GCATC | 3 cut(s) | 43, 79, 678 |
| MaeI | CTAG | 3 cut(s) | 227, 663, 750 |
| MaeII | ACGT | 7 cut(s) | 15, 53, 83, 102, 261, 438, 705 |
| MaeIII | GTNAC | 1 cut(s) | 197 |
| MalI | GATC | 2 cut(s) | 396, 590 |
| MboI | GATC | 2 cut(s) | 394, 588 |
| MboII | GAAGA | 3 cut(s) | 404, 607, 748 |
| MflI | RGATCY | 1 cut(s) | 394 |
| MluCI | AATT | 3 cut(s) | 520, 554, 690 |
| MlyI | GAGTC | 1 cut(s) | 592 |
| MnlI | CCTC | 5 cut(s) | 57, 282, 307, 382, 494 |
| MroI | TCCGGA | 1 cut(s) | 770 |
| MroXI | GAANNNNTTC | 1 cut(s) | 531 |
| MseI | TTAA | 1 cut(s) | 464 |
| MslI | CAYNNNNRTG | 2 cut(s) | 341, 357 |
| MspI | CCGG | 4 cut(s) | 93, 151, 164, 771 |
| MspR9I | CCNGG | 2 cut(s) | 93, 164 |
| MvnI | CGCG | 1 cut(s) | 365 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 31, 86, 302, 323 |
| NciI | CCSGG | 2 cut(s) | 93, 164 |
| NdeII | GATC | 2 cut(s) | 394, 588 |
| NlaIII | CATG | 3 cut(s) | 346, 686, 703 |
| NlaIV | GGNNCC | 1 cut(s) | 697 |
| PagI | TCATGA | 2 cut(s) | 342, 682 |
| PaqCI | CACCTGC | 1 cut(s) | 119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 531 |
| PfeI | GAWTC | 2 cut(s) | 446, 762 |
| PkrI | GCNGC | 3 cut(s) | 6, 98, 283 |
| PleI | GAGTC | 1 cut(s) | 592 |
| PpsI | GAGTC | 1 cut(s) | 592 |
| PspN4I | GGNNCC | 1 cut(s) | 697 |
| PspPI | GGNCC | 1 cut(s) | 6 |
| PsuI | RGATCY | 1 cut(s) | 394 |
| RsaI | GTAC | 2 cut(s) | 380, 510 |
| RsaNI | GTAC | 2 cut(s) | 379, 509 |
| RseI | CAYNNNNRTG | 2 cut(s) | 341, 357 |
| SaqAI | TTAA | 1 cut(s) | 464 |
| SatI | GCNGC | 3 cut(s) | 5, 97, 282 |
| Sau3AI | GATC | 2 cut(s) | 394, 588 |
| Sau96I | GGNCC | 1 cut(s) | 6 |
| SchI | GAGTC | 1 cut(s) | 592 |
| ScrFI | CCNGG | 2 cut(s) | 93, 164 |
| SfaNI | GCATC | 3 cut(s) | 43, 79, 678 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 341, 357 |
| Sse9I | AATT | 3 cut(s) | 520, 554, 690 |
| SsiI | CCGC | 3 cut(s) | 4, 114, 487 |
| SspMI | CTAG | 3 cut(s) | 227, 663, 750 |
| StyD4I | CCNGG | 2 cut(s) | 91, 162 |
| TaiI | ACGT | 7 cut(s) | 18, 56, 86, 105, 264, 441, 708 |
| TaqI | TCGA | 1 cut(s) | 591 |
| TasI | AATT | 3 cut(s) | 520, 554, 690 |
| TatI | WGTACW | 1 cut(s) | 508 |
| TauI | GCSGC | 1 cut(s) | 7 |
| TfiI | GAWTC | 2 cut(s) | 446, 762 |
| Tru1I | TTAA | 1 cut(s) | 464 |
| Tru9I | TTAA | 1 cut(s) | 464 |
| TscAI | CASTG | 3 cut(s) | 16, 580, 762 |
| TseI | GCWGC | 2 cut(s) | 96, 281 |
| TspDTI | ATGAA | 3 cut(s) | 336, 671, 716 |
| TspGWI | ACGGA | 1 cut(s) | 431 |
| TspRI | CASTG | 3 cut(s) | 16, 580, 762 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 386 |
| XapI | RAATTY | 1 cut(s) | 554 |
| XbaI | TCTAGA | 1 cut(s) | 749 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 405 |
| XmnI | GAANNNNTTC | 1 cut(s) | 531 |
| XspI | CTAG | 3 cut(s) | 227, 663, 750 |
| ZraI | GACGTC | 2 cut(s) | 16, 54 |