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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 733 |
| AciI | CCGC | 3 cut(s) | 7, 10, 445 |
| AclWI | GGATC | 3 cut(s) | 377, 635, 705 |
| AcoI | YGGCCR | 1 cut(s) | 784 |
| AcsI | RAATTY | 2 cut(s) | 18, 930 |
| AdeI | CACNNNGTG | 1 cut(s) | 979 |
| AfaI | GTAC | 1 cut(s) | 332 |
| AflIII | ACRYGT | 1 cut(s) | 219 |
| AgsI | TTSAA | 2 cut(s) | 460, 835 |
| AjiI | CACGTC | 3 cut(s) | 153, 165, 220 |
| AjnI | CCWGG | 1 cut(s) | 213 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 95, 127 |
| AluBI | AGCT | 7 cut(s) | 78, 239, 245, 646, 656, 920, 971 |
| AluI | AGCT | 7 cut(s) | 78, 239, 245, 646, 656, 920, 971 |
| Alw21I | GWGCWC | 1 cut(s) | 922 |
| AlwI | GGATC | 3 cut(s) | 377, 635, 705 |
| Ama87I | CYCGRG | 1 cut(s) | 203 |
| Aor13HI | TCCGGA | 1 cut(s) | 733 |
| AoxI | GGCC | 3 cut(s) | 117, 177, 784 |
| ApeKI | GCWGC | 2 cut(s) | 51, 263 |
| ApoI | RAATTY | 2 cut(s) | 18, 930 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 489, 930 |
| AspLEI | GCGC | 1 cut(s) | 841 |
| AsuHPI | GGTGA | 1 cut(s) | 928 |
| AvaI | CYCGRG | 1 cut(s) | 203 |
| BaeGI | GKGCMC | 1 cut(s) | 907 |
| BalI | TGGCCA | 1 cut(s) | 786 |
| BanII | GRGCYC | 1 cut(s) | 922 |
| BauI | CACGAG | 1 cut(s) | 921 |
| BbsI | GAAGAC | 1 cut(s) | 357 |
| Bbv12I | GWGCWC | 1 cut(s) | 922 |
| BbvI | GCAGC | 2 cut(s) | 63, 275 |
| BccI | CCATC | 6 cut(s) | 176, 299, 426, 580, 581, 825 |
| BciT130I | CCWGG | 1 cut(s) | 215 |
| BclI | TGATCA | 1 cut(s) | 895 |
| BfaI | CTAG | 5 cut(s) | 56, 210, 357, 422, 1007 |
| BfmI | CTRYAG | 1 cut(s) | 618 |
| BfoI | RGCGCY | 1 cut(s) | 842 |
| BisI | GCNGC | 3 cut(s) | 10, 52, 264 |
| BlsI | GCNGC | 3 cut(s) | 11, 53, 265 |
| Bme1390I | CCNGG | 1 cut(s) | 215 |
| BmeT110I | CYCGRG | 1 cut(s) | 203 |
| BmgBI | CACGTC | 3 cut(s) | 153, 165, 220 |
| BmiI | GGNNCC | 1 cut(s) | 799 |
| BmrFI | CCNGG | 1 cut(s) | 215 |
| BpiI | GAAGAC | 1 cut(s) | 357 |
| BpmI | CTGGAG | 1 cut(s) | 311 |
| BpuEI | CTTGAG | 3 cut(s) | 64, 158, 225 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1002 |
| BsaJI | CCNNGG | 1 cut(s) | 714 |
| BsaWI | WCCGGW | 1 cut(s) | 733 |
| Bse1I | ACTGG | 1 cut(s) | 328 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1002 |
| BseAI | TCCGGA | 1 cut(s) | 733 |
| BseBI | CCWGG | 1 cut(s) | 215 |
| BseDI | CCNNGG | 1 cut(s) | 714 |
| BseGI | GGATG | 2 cut(s) | 322, 684 |
| BseJI | GATNNNNATC | 1 cut(s) | 1002 |
| BseNI | ACTGG | 1 cut(s) | 328 |
| BseSI | GKGCMC | 1 cut(s) | 907 |
| BseXI | GCAGC | 2 cut(s) | 63, 275 |
| BshFI | GGCC | 3 cut(s) | 119, 179, 786 |
| BsiHKAI | GWGCWC | 1 cut(s) | 922 |
| BsiHKCI | CYCGRG | 1 cut(s) | 203 |
| BsiSI | CCGG | 1 cut(s) | 734 |
| BslFI | GGGAC | 1 cut(s) | 29 |
| BsmFI | GGGAC | 1 cut(s) | 29 |
| BsnI | GGCC | 3 cut(s) | 119, 179, 786 |
| BsoBI | CYCGRG | 1 cut(s) | 203 |
| Bsp1286I | GDGCHC | 2 cut(s) | 907, 922 |
| Bsp13I | TCCGGA | 1 cut(s) | 733 |
| Bsp143I | GATC | 7 cut(s) | 369, 528, 627, 710, 895, 991, 1003 |
| BspACI | CCGC | 3 cut(s) | 7, 10, 445 |
| BspANI | GGCC | 3 cut(s) | 119, 179, 786 |
| BspEI | TCCGGA | 1 cut(s) | 733 |
| BspHI | TCATGA | 1 cut(s) | 640 |
| BspLI | GGNNCC | 1 cut(s) | 799 |
| BspMAI | CTGCAG | 1 cut(s) | 622 |
| BspPI | GGATC | 3 cut(s) | 377, 635, 705 |
| BsrI | ACTGG | 1 cut(s) | 328 |
| BssECI | CCNNGG | 1 cut(s) | 714 |
| BssMI | GATC | 7 cut(s) | 369, 528, 627, 710, 895, 991, 1003 |
| BssSI | CACGAG | 1 cut(s) | 921 |
| Bst2BI | CACGAG | 1 cut(s) | 921 |
| Bst2UI | CCWGG | 1 cut(s) | 215 |
| Bst4CI | ACNGT | 1 cut(s) | 229 |
| BstC8I | GCNNGC | 1 cut(s) | 14 |
| BstDEI | CTNAG | 3 cut(s) | 268, 594, 810 |
| BstDSI | CCRYGG | 1 cut(s) | 714 |
| BstF5I | GGATG | 2 cut(s) | 322, 684 |
| BstH2I | RGCGCY | 1 cut(s) | 842 |
| BstHHI | GCGC | 1 cut(s) | 841 |
| BstKTI | GATC | 7 cut(s) | 372, 531, 630, 713, 898, 994, 1006 |
| BstMBI | GATC | 7 cut(s) | 369, 528, 627, 710, 895, 991, 1003 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 836, 968 |
| BstNI | CCWGG | 1 cut(s) | 215 |
| BstSCI | CCNGG | 1 cut(s) | 213 |
| BstSFI | CTRYAG | 1 cut(s) | 618 |
| BstSLI | GKGCMC | 1 cut(s) | 907 |
| BstV1I | GCAGC | 2 cut(s) | 63, 275 |
| BstV2I | GAAGAC | 1 cut(s) | 357 |
| BstX2I | RGATCY | 2 cut(s) | 369, 710 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 794 |
| BstYI | RGATCY | 2 cut(s) | 369, 710 |
| BsuRI | GGCC | 3 cut(s) | 119, 179, 786 |
| BtgI | CCRYGG | 1 cut(s) | 714 |
| BtrI | CACGTC | 3 cut(s) | 153, 165, 220 |
| BtsCI | GGATG | 2 cut(s) | 322, 684 |
| BtsIMutI | CAGTG | 1 cut(s) | 666 |
| Cac8I | GCNNGC | 1 cut(s) | 14 |
| CciI | TCATGA | 1 cut(s) | 640 |
| CfoI | GCGC | 1 cut(s) | 841 |
| Csp6I | GTAC | 1 cut(s) | 331 |
| CviAII | CATG | 3 cut(s) | 641, 677, 788 |
| CviQI | GTAC | 1 cut(s) | 331 |
| DdeI | CTNAG | 3 cut(s) | 268, 594, 810 |
| DpnI | GATC | 7 cut(s) | 371, 530, 629, 712, 897, 993, 1005 |
| DpnII | GATC | 7 cut(s) | 369, 528, 627, 710, 895, 991, 1003 |
| DraIII | CACNNNGTG | 1 cut(s) | 979 |
| EaeI | YGGCCR | 1 cut(s) | 784 |
| Ecl136II | GAGCTC | 1 cut(s) | 920 |
| Eco24I | GRGCYC | 1 cut(s) | 922 |
| Eco53kI | GAGCTC | 1 cut(s) | 920 |
| Eco88I | CYCGRG | 1 cut(s) | 203 |
| EcoICRI | GAGCTC | 1 cut(s) | 920 |
| EcoRII | CCWGG | 1 cut(s) | 213 |
| EcoT38I | GRGCYC | 1 cut(s) | 922 |
| FaeI | CATG | 3 cut(s) | 644, 680, 791 |
| FaqI | GGGAC | 1 cut(s) | 29 |
| FatI | CATG | 3 cut(s) | 640, 676, 787 |
| FauNDI | CATATG | 1 cut(s) | 312 |
| FbaI | TGATCA | 1 cut(s) | 895 |
| Fnu4HI | GCNGC | 3 cut(s) | 10, 52, 264 |
| FokI | GGATG | 2 cut(s) | 329, 671 |
| FriOI | GRGCYC | 1 cut(s) | 922 |
| Fsp4HI | GCNGC | 3 cut(s) | 10, 52, 264 |
| FspBI | CTAG | 5 cut(s) | 56, 210, 357, 422, 1007 |
| GlaI | GCGC | 1 cut(s) | 840 |
| GluI | GCNGC | 3 cut(s) | 10, 52, 264 |
| GsuI | CTGGAG | 1 cut(s) | 311 |
| HaeII | RGCGCY | 1 cut(s) | 842 |
| HaeIII | GGCC | 3 cut(s) | 119, 179, 786 |
| HapII | CCGG | 1 cut(s) | 734 |
| HhaI | GCGC | 1 cut(s) | 841 |
| Hin1II | CATG | 3 cut(s) | 644, 680, 791 |
| Hin6I | GCGC | 1 cut(s) | 839 |
| HinP1I | GCGC | 1 cut(s) | 839 |
| HincII | GTYRAC | 3 cut(s) | 225, 232, 752 |
| HindII | GTYRAC | 3 cut(s) | 225, 232, 752 |
| HindIII | AAGCTT | 1 cut(s) | 243 |
| HinfI | GANTC | 8 cut(s) | 32, 186, 199, 304, 320, 404, 556, 737 |
| HpaI | GTTAAC | 1 cut(s) | 225 |
| HpaII | CCGG | 1 cut(s) | 734 |
| HphI | GGTGA | 1 cut(s) | 928 |
| Hpy166II | GTNNAC | 4 cut(s) | 129, 225, 232, 752 |
| Hpy188I | TCNGA | 1 cut(s) | 484 |
| Hpy8I | GTNNAC | 4 cut(s) | 129, 225, 232, 752 |
| HpyAV | CCTTC | 3 cut(s) | 94, 354, 577 |
| HpyCH4III | ACNGT | 1 cut(s) | 229 |
| HpyCH4IV | ACGT | 5 cut(s) | 152, 164, 219, 396, 754 |
| HpyCH4V | TGCA | 4 cut(s) | 16, 29, 581, 620 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 836, 968 |
| HpyF3I | CTNAG | 3 cut(s) | 268, 594, 810 |
| HpySE526I | ACGT | 5 cut(s) | 152, 164, 219, 396, 754 |
| Hsp92II | CATG | 3 cut(s) | 644, 680, 791 |
| HspAI | GCGC | 1 cut(s) | 839 |
| Kpn2I | TCCGGA | 1 cut(s) | 733 |
| Ksp22I | TGATCA | 1 cut(s) | 895 |
| KspAI | GTTAAC | 1 cut(s) | 225 |
| Kzo9I | GATC | 7 cut(s) | 369, 528, 627, 710, 895, 991, 1003 |
| LmnI | GCTCC | 3 cut(s) | 330, 653, 797 |
| Lsp1109I | GCAGC | 2 cut(s) | 63, 275 |
| MaeI | CTAG | 5 cut(s) | 56, 210, 357, 422, 1007 |
| MaeII | ACGT | 5 cut(s) | 152, 164, 219, 396, 754 |
| MaeIII | GTNAC | 3 cut(s) | 165, 613, 664 |
| MalI | GATC | 7 cut(s) | 371, 530, 629, 712, 897, 993, 1005 |
| MboI | GATC | 7 cut(s) | 369, 528, 627, 710, 895, 991, 1003 |
| MboII | GAAGA | 8 cut(s) | 82, 116, 263, 359, 362, 706, 938, 1001 |
| MflI | RGATCY | 2 cut(s) | 369, 710 |
| MhlI | GDGCHC | 2 cut(s) | 907, 922 |
| MlsI | TGGCCA | 1 cut(s) | 786 |
| MluCI | AATT | 7 cut(s) | 18, 454, 512, 606, 703, 742, 930 |
| MluNI | TGGCCA | 1 cut(s) | 786 |
| MlyI | GAGTC | 3 cut(s) | 298, 398, 550 |
| MnlI | CCTC | 6 cut(s) | 265, 452, 760, 764, 790, 852 |
| Mox20I | TGGCCA | 1 cut(s) | 786 |
| MroI | TCCGGA | 1 cut(s) | 733 |
| MroXI | GAANNNNTTC | 2 cut(s) | 489, 930 |
| MscI | TGGCCA | 1 cut(s) | 786 |
| MseI | TTAA | 4 cut(s) | 224, 299, 498, 506 |
| MslI | CAYNNNNRTG | 4 cut(s) | 299, 315, 689, 792 |
| Msp20I | TGGCCA | 1 cut(s) | 786 |
| MspI | CCGG | 1 cut(s) | 734 |
| MspR9I | CCNGG | 1 cut(s) | 215 |
| MvaI | CCWGG | 1 cut(s) | 215 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 836, 968 |
| NdeI | CATATG | 1 cut(s) | 312 |
| NdeII | GATC | 7 cut(s) | 369, 528, 627, 710, 895, 991, 1003 |
| NlaIII | CATG | 3 cut(s) | 644, 680, 791 |
| NlaIV | GGNNCC | 1 cut(s) | 799 |
| NmeAIII | GCCGAG | 1 cut(s) | 95 |
| NmuCI | GTSAC | 2 cut(s) | 165, 664 |
| PaeR7I | CTCGAG | 1 cut(s) | 203 |
| PagI | TCATGA | 1 cut(s) | 640 |
| PdmI | GAANNNNTTC | 2 cut(s) | 489, 930 |
| PfeI | GAWTC | 5 cut(s) | 32, 186, 199, 320, 737 |
| PkrI | GCNGC | 3 cut(s) | 11, 53, 265 |
| PleI | GAGTC | 3 cut(s) | 298, 398, 550 |
| PpsI | GAGTC | 3 cut(s) | 298, 398, 550 |
| Psp124BI | GAGCTC | 1 cut(s) | 922 |
| Psp6I | CCWGG | 1 cut(s) | 213 |
| PspGI | CCWGG | 1 cut(s) | 213 |
| PspN4I | GGNNCC | 1 cut(s) | 799 |
| PstI | CTGCAG | 1 cut(s) | 622 |
| PsuI | RGATCY | 2 cut(s) | 369, 710 |
| RsaI | GTAC | 1 cut(s) | 332 |
| RsaNI | GTAC | 1 cut(s) | 331 |
| RseI | CAYNNNNRTG | 4 cut(s) | 299, 315, 689, 792 |
| SacI | GAGCTC | 1 cut(s) | 922 |
| SaqAI | TTAA | 4 cut(s) | 224, 299, 498, 506 |
| SatI | GCNGC | 3 cut(s) | 10, 52, 264 |
| Sau3AI | GATC | 7 cut(s) | 369, 528, 627, 710, 895, 991, 1003 |
| SchI | GAGTC | 3 cut(s) | 298, 398, 550 |
| ScrFI | CCNGG | 1 cut(s) | 215 |
| SduI | GDGCHC | 2 cut(s) | 907, 922 |
| SfcI | CTRYAG | 1 cut(s) | 618 |
| Sfr274I | CTCGAG | 1 cut(s) | 203 |
| SlaI | CTCGAG | 1 cut(s) | 203 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 299, 315, 689, 792 |
| SmlI | CTYRAG | 4 cut(s) | 79, 173, 203, 240 |
| SmoI | CTYRAG | 4 cut(s) | 79, 173, 203, 240 |
| Sse9I | AATT | 7 cut(s) | 18, 454, 512, 606, 703, 742, 930 |
| SsiI | CCGC | 3 cut(s) | 7, 10, 445 |
| SspMI | CTAG | 5 cut(s) | 56, 210, 357, 422, 1007 |
| SstI | GAGCTC | 1 cut(s) | 922 |
| StyD4I | CCNGG | 1 cut(s) | 213 |
| TaaI | ACNGT | 1 cut(s) | 229 |
| TaiI | ACGT | 5 cut(s) | 155, 167, 222, 399, 757 |
| TaqI | TCGA | 4 cut(s) | 204, 604, 707, 880 |
| TasI | AATT | 7 cut(s) | 18, 454, 512, 606, 703, 742, 930 |
| TauI | GCSGC | 1 cut(s) | 12 |
| TfiI | GAWTC | 5 cut(s) | 32, 186, 199, 320, 737 |
| Tru1I | TTAA | 4 cut(s) | 224, 299, 498, 506 |
| Tru9I | TTAA | 4 cut(s) | 224, 299, 498, 506 |
| TscAI | CASTG | 1 cut(s) | 673 |
| TseFI | GTSAC | 2 cut(s) | 165, 664 |
| TseI | GCWGC | 2 cut(s) | 51, 263 |
| Tsp45I | GTSAC | 2 cut(s) | 165, 664 |
| TspDTI | ATGAA | 7 cut(s) | 12, 17, 356, 360, 524, 629, 674 |
| TspGWI | ACGGA | 2 cut(s) | 640, 703 |
| TspRI | CASTG | 1 cut(s) | 673 |
| XapI | RAATTY | 2 cut(s) | 18, 930 |
| XbaI | TCTAGA | 1 cut(s) | 1006 |
| XhoI | CTCGAG | 1 cut(s) | 203 |
| XmnI | GAANNNNTTC | 2 cut(s) | 489, 930 |
| XspI | CTAG | 5 cut(s) | 56, 210, 357, 422, 1007 |