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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 746 |
| Acc36I | ACCTGC | 1 cut(s) | 746 |
| Acc65I | GGTACC | 1 cut(s) | 407 |
| AccB1I | GGYRCC | 1 cut(s) | 407 |
| AccII | CGCG | 1 cut(s) | 453 |
| AccIII | TCCGGA | 1 cut(s) | 44 |
| AcsI | RAATTY | 1 cut(s) | 354 |
| AcuI | CTGAAG | 3 cut(s) | 159, 234, 450 |
| AcvI | CACGTG | 1 cut(s) | 611 |
| AdeI | CACNNNGTG | 1 cut(s) | 614 |
| AfaI | GTAC | 2 cut(s) | 409, 868 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 490, 518 |
| AgeI | ACCGGT | 1 cut(s) | 404 |
| AgsI | TTSAA | 3 cut(s) | 259, 328, 881 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 226, 727 |
| AjiI | CACGTC | 1 cut(s) | 596 |
| AjnI | CCWGG | 3 cut(s) | 69, 318, 630 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 800, 832 |
| AluBI | AGCT | 4 cut(s) | 19, 82, 212, 644 |
| AluI | AGCT | 4 cut(s) | 19, 82, 212, 644 |
| Alw26I | GTCTC | 3 cut(s) | 508, 735, 788 |
| Ama87I | CYCGRG | 1 cut(s) | 789 |
| Aor13HI | TCCGGA | 1 cut(s) | 44 |
| AoxI | GGCC | 7 cut(s) | 293, 398, 481, 500, 533, 664, 669 |
| ApaI | GGGCCC | 1 cut(s) | 537 |
| ApeKI | GCWGC | 1 cut(s) | 856 |
| ApoI | RAATTY | 1 cut(s) | 354 |
| AseI | ATTAAT | 1 cut(s) | 117 |
| AsiGI | ACCGGT | 1 cut(s) | 404 |
| Asp718I | GGTACC | 1 cut(s) | 407 |
| AspLEI | GCGC | 1 cut(s) | 467 |
| AsuC2I | CCSGG | 1 cut(s) | 668 |
| AsuHPI | GGTGA | 1 cut(s) | 668 |
| AvaI | CYCGRG | 1 cut(s) | 789 |
| AvaII | GGWCC | 4 cut(s) | 66, 220, 228, 634 |
| BaeGI | GKGCMC | 1 cut(s) | 537 |
| BanI | GGYRCC | 1 cut(s) | 407 |
| BanII | GRGCYC | 1 cut(s) | 537 |
| BbrPI | CACGTG | 1 cut(s) | 611 |
| BbsI | GAAGAC | 1 cut(s) | 598 |
| BbvI | GCAGC | 1 cut(s) | 868 |
| BccI | CCATC | 1 cut(s) | 270 |
| BceAI | ACGGC | 1 cut(s) | 726 |
| BciT130I | CCWGG | 3 cut(s) | 71, 320, 632 |
| BciVI | GTATCC | 1 cut(s) | 819 |
| BclI | TGATCA | 1 cut(s) | 388 |
| BcnI | CCSGG | 1 cut(s) | 668 |
| BcoDI | GTCTC | 3 cut(s) | 508, 735, 788 |
| BfaI | CTAG | 2 cut(s) | 245, 886 |
| BfuAI | ACCTGC | 1 cut(s) | 746 |
| BfuI | GTATCC | 1 cut(s) | 819 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 301 |
| BisI | GCNGC | 1 cut(s) | 857 |
| BlsI | GCNGC | 1 cut(s) | 858 |
| Bme1390I | CCNGG | 4 cut(s) | 71, 320, 632, 668 |
| Bme18I | GGWCC | 4 cut(s) | 66, 220, 228, 634 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 226, 727 |
| BmeT110I | CYCGRG | 1 cut(s) | 789 |
| BmgBI | CACGTC | 1 cut(s) | 596 |
| BmiI | GGNNCC | 6 cut(s) | 68, 222, 230, 409, 482, 535 |
| BmrFI | CCNGG | 4 cut(s) | 71, 320, 632, 668 |
| BpiI | GAAGAC | 1 cut(s) | 598 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 332, 364 |
| BpuEI | CTTGAG | 1 cut(s) | 179 |
| BpuMI | CCSGG | 1 cut(s) | 668 |
| BsaAI | YACGTR | 1 cut(s) | 611 |
| BsaBI | GATNNNNATC | 1 cut(s) | 167 |
| BsaI | GGTCTC | 2 cut(s) | 735, 788 |
| BsaJI | CCNNGG | 7 cut(s) | 69, 224, 484, 565, 578, 630, 833 |
| BsaWI | WCCGGW | 2 cut(s) | 44, 404 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 490, 518 |
| Bse118I | RCCGGY | 1 cut(s) | 404 |
| Bse1I | ACTGG | 1 cut(s) | 305 |
| Bse8I | GATNNNNATC | 1 cut(s) | 167 |
| BseAI | TCCGGA | 1 cut(s) | 44 |
| BseBI | CCWGG | 3 cut(s) | 71, 320, 632 |
| BseDI | CCNNGG | 7 cut(s) | 69, 224, 484, 565, 578, 630, 833 |
| BseGI | GGATG | 1 cut(s) | 79 |
| BseJI | GATNNNNATC | 1 cut(s) | 167 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 490, 518 |
| BseMII | CTCAG | 1 cut(s) | 695 |
| BseNI | ACTGG | 1 cut(s) | 305 |
| BseSI | GKGCMC | 1 cut(s) | 537 |
| BseXI | GCAGC | 1 cut(s) | 868 |
| Bsh1236I | CGCG | 1 cut(s) | 453 |
| BshFI | GGCC | 7 cut(s) | 295, 400, 483, 502, 535, 666, 671 |
| BshNI | GGYRCC | 1 cut(s) | 407 |
| BshTI | ACCGGT | 1 cut(s) | 404 |
| BsiHKCI | CYCGRG | 1 cut(s) | 789 |
| BsiSI | CCGG | 3 cut(s) | 45, 405, 668 |
| BslFI | GGGAC | 1 cut(s) | 214 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 490, 518 |
| BsmAI | GTCTC | 3 cut(s) | 508, 735, 788 |
| BsmFI | GGGAC | 1 cut(s) | 214 |
| BsnI | GGCC | 7 cut(s) | 295, 400, 483, 502, 535, 666, 671 |
| Bso31I | GGTCTC | 2 cut(s) | 735, 788 |
| BsoBI | CYCGRG | 1 cut(s) | 789 |
| Bsp120I | GGGCCC | 1 cut(s) | 533 |
| Bsp1286I | GDGCHC | 1 cut(s) | 537 |
| Bsp13I | TCCGGA | 1 cut(s) | 44 |
| Bsp143I | GATC | 2 cut(s) | 107, 388 |
| Bsp68I | TCGCGA | 1 cut(s) | 453 |
| BspANI | GGCC | 7 cut(s) | 295, 400, 483, 502, 535, 666, 671 |
| BspCNI | CTCAG | 1 cut(s) | 694 |
| BspEI | TCCGGA | 1 cut(s) | 44 |
| BspFNI | CGCG | 1 cut(s) | 453 |
| BspLI | GGNNCC | 6 cut(s) | 68, 222, 230, 409, 482, 535 |
| BspMI | ACCTGC | 1 cut(s) | 746 |
| BspQI | GCTCTTC | 1 cut(s) | 243 |
| BspT107I | GGYRCC | 1 cut(s) | 407 |
| BspTNI | GGTCTC | 2 cut(s) | 735, 788 |
| BsrFI | RCCGGY | 1 cut(s) | 404 |
| BsrI | ACTGG | 1 cut(s) | 305 |
| BssAI | RCCGGY | 1 cut(s) | 404 |
| BssECI | CCNNGG | 7 cut(s) | 69, 224, 484, 565, 578, 630, 833 |
| BssMI | GATC | 2 cut(s) | 107, 388 |
| BssT1I | CCWWGG | 4 cut(s) | 484, 565, 578, 833 |
| Bst2UI | CCWGG | 3 cut(s) | 71, 320, 632 |
| Bst4CI | ACNGT | 3 cut(s) | 228, 334, 557 |
| Bst6I | CTCTTC | 3 cut(s) | 210, 243, 750 |
| BstBAI | YACGTR | 1 cut(s) | 611 |
| BstDEI | CTNAG | 1 cut(s) | 681 |
| BstDSI | CCRYGG | 1 cut(s) | 224 |
| BstF5I | GGATG | 1 cut(s) | 79 |
| BstFNI | CGCG | 1 cut(s) | 453 |
| BstHHI | GCGC | 1 cut(s) | 467 |
| BstKTI | GATC | 2 cut(s) | 110, 391 |
| BstMAI | GTCTC | 3 cut(s) | 508, 735, 788 |
| BstMBI | GATC | 2 cut(s) | 107, 388 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 301, 366 |
| BstNI | CCWGG | 3 cut(s) | 71, 320, 632 |
| BstSCI | CCNGG | 4 cut(s) | 69, 318, 630, 666 |
| BstSLI | GKGCMC | 1 cut(s) | 537 |
| BstUI | CGCG | 1 cut(s) | 453 |
| BstV1I | GCAGC | 1 cut(s) | 868 |
| BstV2I | GAAGAC | 1 cut(s) | 598 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 805 |
| BsuI | GTATCC | 1 cut(s) | 819 |
| BsuRI | GGCC | 7 cut(s) | 295, 400, 483, 502, 535, 666, 671 |
| BtgI | CCRYGG | 1 cut(s) | 224 |
| BtgZI | GCGATG | 1 cut(s) | 115 |
| BtrI | CACGTC | 1 cut(s) | 596 |
| BtsCI | GGATG | 1 cut(s) | 79 |
| BtuMI | TCGCGA | 1 cut(s) | 453 |
| BveI | ACCTGC | 1 cut(s) | 746 |
| CfoI | GCGC | 1 cut(s) | 467 |
| Cfr10I | RCCGGY | 1 cut(s) | 404 |
| Csp6I | GTAC | 2 cut(s) | 408, 867 |
| CspAI | ACCGGT | 1 cut(s) | 404 |
| CviAII | CATG | 1 cut(s) | 518 |
| CviQI | GTAC | 2 cut(s) | 408, 867 |
| DdeI | CTNAG | 1 cut(s) | 681 |
| DpnI | GATC | 2 cut(s) | 109, 390 |
| DpnII | GATC | 2 cut(s) | 107, 388 |
| DraIII | CACNNNGTG | 1 cut(s) | 614 |
| DriI | GACNNNNNGTC | 2 cut(s) | 226, 727 |
| Eam1104I | CTCTTC | 3 cut(s) | 210, 243, 750 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 226, 727 |
| EarI | CTCTTC | 3 cut(s) | 210, 243, 750 |
| Eco130I | CCWWGG | 4 cut(s) | 484, 565, 578, 833 |
| Eco147I | AGGCCT | 1 cut(s) | 502 |
| Eco24I | GRGCYC | 1 cut(s) | 537 |
| Eco31I | GGTCTC | 2 cut(s) | 735, 788 |
| Eco47I | GGWCC | 4 cut(s) | 66, 220, 228, 634 |
| Eco57I | CTGAAG | 3 cut(s) | 159, 234, 450 |
| Eco72I | CACGTG | 1 cut(s) | 611 |
| Eco88I | CYCGRG | 1 cut(s) | 789 |
| EcoO109I | RGGNCCY | 2 cut(s) | 220, 481 |
| EcoRII | CCWGG | 3 cut(s) | 69, 318, 630 |
| EcoT14I | CCWWGG | 4 cut(s) | 484, 565, 578, 833 |
| EcoT38I | GRGCYC | 1 cut(s) | 537 |
| ErhI | CCWWGG | 4 cut(s) | 484, 565, 578, 833 |
| FaeI | CATG | 1 cut(s) | 521 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 214 |
| FatI | CATG | 1 cut(s) | 517 |
| FauNDI | CATATG | 2 cut(s) | 180, 550 |
| FbaI | TGATCA | 1 cut(s) | 388 |
| Fnu4HI | GCNGC | 1 cut(s) | 857 |
| FokI | GGATG | 1 cut(s) | 86 |
| FriOI | GRGCYC | 1 cut(s) | 537 |
| Fsp4HI | GCNGC | 1 cut(s) | 857 |
| FspBI | CTAG | 2 cut(s) | 245, 886 |
| GlaI | GCGC | 1 cut(s) | 466 |
| GluI | GCNGC | 1 cut(s) | 857 |
| HaeIII | GGCC | 7 cut(s) | 295, 400, 483, 502, 535, 666, 671 |
| HapII | CCGG | 3 cut(s) | 45, 405, 668 |
| HhaI | GCGC | 1 cut(s) | 467 |
| Hin1II | CATG | 1 cut(s) | 521 |
| Hin6I | GCGC | 1 cut(s) | 465 |
| HinP1I | GCGC | 1 cut(s) | 465 |
| HindIII | AAGCTT | 1 cut(s) | 17 |
| HinfI | GANTC | 4 cut(s) | 255, 364, 685, 780 |
| HpaII | CCGG | 3 cut(s) | 45, 405, 668 |
| HphI | GGTGA | 1 cut(s) | 668 |
| Hpy166II | GTNNAC | 1 cut(s) | 599 |
| Hpy188I | TCNGA | 5 cut(s) | 267, 352, 513, 684, 785 |
| Hpy188III | TCNNGA | 7 cut(s) | 35, 45, 172, 245, 328, 452, 791 |
| Hpy8I | GTNNAC | 1 cut(s) | 599 |
| HpyAV | CCTTC | 6 cut(s) | 42, 142, 483, 489, 516, 803 |
| HpyCH4III | ACNGT | 3 cut(s) | 228, 334, 557 |
| HpyCH4IV | ACGT | 4 cut(s) | 313, 508, 595, 610 |
| HpyCH4V | TGCA | 3 cut(s) | 95, 360, 746 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 301, 366 |
| HpyF3I | CTNAG | 1 cut(s) | 681 |
| HpySE526I | ACGT | 4 cut(s) | 313, 508, 595, 610 |
| Hsp92II | CATG | 1 cut(s) | 521 |
| HspAI | GCGC | 1 cut(s) | 465 |
| Kpn2I | TCCGGA | 1 cut(s) | 44 |
| KpnI | GGTACC | 1 cut(s) | 411 |
| Ksp22I | TGATCA | 1 cut(s) | 388 |
| Kzo9I | GATC | 2 cut(s) | 107, 388 |
| LguI | GCTCTTC | 1 cut(s) | 243 |
| Lsp1109I | GCAGC | 1 cut(s) | 868 |
| MaeI | CTAG | 2 cut(s) | 245, 886 |
| MaeII | ACGT | 4 cut(s) | 313, 508, 595, 610 |
| MaeIII | GTNAC | 2 cut(s) | 557, 674 |
| MalI | GATC | 2 cut(s) | 109, 390 |
| MboI | GATC | 2 cut(s) | 107, 388 |
| MboII | GAAGA | 5 cut(s) | 152, 227, 260, 603, 767 |
| MhlI | GDGCHC | 1 cut(s) | 537 |
| MluCI | AATT | 3 cut(s) | 52, 354, 648 |
| MlyI | GAGTC | 1 cut(s) | 774 |
| MmeI | TCCRAC | 1 cut(s) | 661 |
| MroI | TCCGGA | 1 cut(s) | 44 |
| MseI | TTAA | 2 cut(s) | 89, 117 |
| MspI | CCGG | 3 cut(s) | 45, 405, 668 |
| MspR9I | CCNGG | 4 cut(s) | 71, 320, 632, 668 |
| MvaI | CCWGG | 3 cut(s) | 71, 320, 632 |
| MvnI | CGCG | 1 cut(s) | 453 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 301, 366 |
| NciI | CCSGG | 1 cut(s) | 668 |
| NdeI | CATATG | 2 cut(s) | 180, 550 |
| NdeII | GATC | 2 cut(s) | 107, 388 |
| NlaIII | CATG | 1 cut(s) | 521 |
| NlaIV | GGNNCC | 6 cut(s) | 68, 222, 230, 409, 482, 535 |
| NmuCI | GTSAC | 2 cut(s) | 557, 674 |
| NruI | TCGCGA | 1 cut(s) | 453 |
| PaeR7I | CTCGAG | 1 cut(s) | 789 |
| PaqCI | CACCTGC | 1 cut(s) | 746 |
| PceI | AGGCCT | 1 cut(s) | 502 |
| PciSI | GCTCTTC | 1 cut(s) | 243 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 592, 739 |
| PfeI | GAWTC | 3 cut(s) | 255, 364, 685 |
| PfoI | TCCNGGA | 1 cut(s) | 318 |
| PinAI | ACCGGT | 1 cut(s) | 404 |
| PkrI | GCNGC | 1 cut(s) | 858 |
| PleI | GAGTC | 1 cut(s) | 774 |
| PmaCI | CACGTG | 1 cut(s) | 611 |
| PmlI | CACGTG | 1 cut(s) | 611 |
| PpsI | GAGTC | 1 cut(s) | 774 |
| Ppu21I | YACGTR | 1 cut(s) | 611 |
| PpuMI | RGGWCCY | 1 cut(s) | 220 |
| PshBI | ATTAAT | 1 cut(s) | 117 |
| Psp5II | RGGWCCY | 1 cut(s) | 220 |
| Psp6I | CCWGG | 3 cut(s) | 69, 318, 630 |
| PspCI | CACGTG | 1 cut(s) | 611 |
| PspGI | CCWGG | 3 cut(s) | 69, 318, 630 |
| PspN4I | GGNNCC | 6 cut(s) | 68, 222, 230, 409, 482, 535 |
| PspOMI | GGGCCC | 1 cut(s) | 533 |
| PspPPI | RGGWCCY | 1 cut(s) | 220 |
| RruI | TCGCGA | 1 cut(s) | 453 |
| RsaI | GTAC | 2 cut(s) | 409, 868 |
| RsaNI | GTAC | 2 cut(s) | 408, 867 |
| SapI | GCTCTTC | 1 cut(s) | 243 |
| SaqAI | TTAA | 2 cut(s) | 89, 117 |
| SatI | GCNGC | 1 cut(s) | 857 |
| Sau3AI | GATC | 2 cut(s) | 107, 388 |
| SchI | GAGTC | 1 cut(s) | 774 |
| ScrFI | CCNGG | 4 cut(s) | 71, 320, 632, 668 |
| SduI | GDGCHC | 1 cut(s) | 537 |
| Sfr274I | CTCGAG | 1 cut(s) | 789 |
| SinI | GGWCC | 4 cut(s) | 66, 220, 228, 634 |
| SlaI | CTCGAG | 1 cut(s) | 789 |
| SmlI | CTYRAG | 2 cut(s) | 194, 789 |
| SmoI | CTYRAG | 2 cut(s) | 194, 789 |
| Sse9I | AATT | 3 cut(s) | 52, 354, 648 |
| SseBI | AGGCCT | 1 cut(s) | 502 |
| SspI | AATATT | 1 cut(s) | 206 |
| SspMI | CTAG | 2 cut(s) | 245, 886 |
| StuI | AGGCCT | 1 cut(s) | 502 |
| StyD4I | CCNGG | 4 cut(s) | 69, 318, 630, 666 |
| StyI | CCWWGG | 4 cut(s) | 484, 565, 578, 833 |
| TaaI | ACNGT | 3 cut(s) | 228, 334, 557 |
| TaiI | ACGT | 4 cut(s) | 316, 511, 598, 613 |
| TaqI | TCGA | 3 cut(s) | 586, 790, 872 |
| TasI | AATT | 3 cut(s) | 52, 354, 648 |
| TfiI | GAWTC | 3 cut(s) | 255, 364, 685 |
| Tru1I | TTAA | 2 cut(s) | 89, 117 |
| Tru9I | TTAA | 2 cut(s) | 89, 117 |
| TseFI | GTSAC | 2 cut(s) | 557, 674 |
| TseI | GCWGC | 1 cut(s) | 856 |
| Tsp45I | GTSAC | 2 cut(s) | 557, 674 |
| TspDTI | ATGAA | 3 cut(s) | 157, 161, 768 |
| VpaK11BI | GGWCC | 4 cut(s) | 66, 220, 228, 634 |
| VspI | ATTAAT | 1 cut(s) | 117 |
| XapI | RAATTY | 1 cut(s) | 354 |
| XbaI | TCTAGA | 1 cut(s) | 244 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 231, 859 |
| XhoI | CTCGAG | 1 cut(s) | 789 |
| XspI | CTAG | 2 cut(s) | 245, 886 |