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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 641, 716, 797 |
| AciI | CCGC | 3 cut(s) | 283, 558, 720 |
| AclWI | GGATC | 2 cut(s) | 473, 543 |
| AcoI | YGGCCR | 1 cut(s) | 628 |
| AcyI | GRCGYC | 1 cut(s) | 642 |
| AfaI | GTAC | 2 cut(s) | 57, 170 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 742, 746 |
| AgsI | TTSAA | 4 cut(s) | 218, 298, 679, 833 |
| AjnI | CCWGG | 1 cut(s) | 28 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 210, 242 |
| AluBI | AGCT | 5 cut(s) | 47, 77, 83, 484, 683 |
| AluI | AGCT | 5 cut(s) | 47, 77, 83, 484, 683 |
| Alw21I | GWGCWC | 1 cut(s) | 486 |
| Alw26I | GTCTC | 1 cut(s) | 214 |
| AlwI | GGATC | 2 cut(s) | 473, 543 |
| Ama87I | CYCGRG | 1 cut(s) | 42 |
| AoxI | GGCC | 2 cut(s) | 628, 854 |
| ApeKI | GCWGC | 1 cut(s) | 812 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 327 |
| AspA2I | CCTAGG | 1 cut(s) | 740 |
| AspLEI | GCGC | 1 cut(s) | 644 |
| AsuHPI | GGTGA | 3 cut(s) | 803, 811, 818 |
| AvaI | CYCGRG | 1 cut(s) | 42 |
| AvrII | CCTAGG | 1 cut(s) | 740 |
| AxyI | CCTNAGG | 1 cut(s) | 802 |
| BalI | TGGCCA | 1 cut(s) | 630 |
| BanI | GGYRCC | 3 cut(s) | 641, 716, 797 |
| BanII | GRGCYC | 1 cut(s) | 486 |
| BauI | CACGAG | 1 cut(s) | 527 |
| BbsI | GAAGAC | 2 cut(s) | 195, 398 |
| Bbv12I | GWGCWC | 1 cut(s) | 486 |
| BbvI | GCAGC | 1 cut(s) | 799 |
| BccI | CCATC | 8 cut(s) | 15, 137, 264, 418, 669, 707, 788, 792 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 437, 471 |
| BciT130I | CCWGG | 1 cut(s) | 30 |
| BciVI | GTATCC | 1 cut(s) | 26 |
| BcoDI | GTCTC | 1 cut(s) | 214 |
| BfaI | CTAG | 2 cut(s) | 260, 741 |
| BfoI | RGCGCY | 1 cut(s) | 645 |
| BfuI | GTATCC | 1 cut(s) | 26 |
| BisI | GCNGC | 1 cut(s) | 813 |
| BlnI | CCTAGG | 1 cut(s) | 740 |
| BlpI | GCTNAGC | 1 cut(s) | 48 |
| BlsI | GCNGC | 1 cut(s) | 814 |
| Bme1390I | CCNGG | 1 cut(s) | 30 |
| BmeT110I | CYCGRG | 1 cut(s) | 42 |
| BmiI | GGNNCC | 4 cut(s) | 584, 643, 718, 799 |
| BmrFI | CCNGG | 1 cut(s) | 30 |
| BmsI | GCATC | 4 cut(s) | 17, 110, 661, 799 |
| BpiI | GAAGAC | 2 cut(s) | 195, 398 |
| BpmI | CTGGAG | 1 cut(s) | 149 |
| Bpu10I | CCTNAGC | 1 cut(s) | 851 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 48 |
| BpuEI | CTTGAG | 1 cut(s) | 63 |
| Bsa29I | ATCGAT | 1 cut(s) | 447 |
| BsaAI | YACGTR | 1 cut(s) | 59 |
| BsaHI | GRCGYC | 1 cut(s) | 642 |
| BsaI | GGTCTC | 1 cut(s) | 214 |
| BsaJI | CCNNGG | 2 cut(s) | 740, 771 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 742, 746 |
| Bse1I | ACTGG | 2 cut(s) | 53, 166 |
| Bse21I | CCTNAGG | 1 cut(s) | 802 |
| Bse3DI | GCAATG | 2 cut(s) | 384, 501 |
| BseBI | CCWGG | 1 cut(s) | 30 |
| BseCI | ATCGAT | 1 cut(s) | 447 |
| BseDI | CCNNGG | 2 cut(s) | 740, 771 |
| BseGI | GGATG | 3 cut(s) | 101, 132, 522 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 742, 746 |
| BseMI | GCAATG | 2 cut(s) | 384, 501 |
| BseMII | CTCAG | 1 cut(s) | 816 |
| BseNI | ACTGG | 2 cut(s) | 53, 166 |
| BseRI | GAGGAG | 1 cut(s) | 675 |
| BseXI | GCAGC | 1 cut(s) | 799 |
| BshFI | GGCC | 2 cut(s) | 630, 856 |
| BshNI | GGYRCC | 3 cut(s) | 641, 716, 797 |
| BshVI | ATCGAT | 1 cut(s) | 447 |
| BsiHKAI | GWGCWC | 1 cut(s) | 486 |
| BsiHKCI | CYCGRG | 1 cut(s) | 42 |
| BslFI | GGGAC | 1 cut(s) | 488 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 742, 746 |
| BsmAI | GTCTC | 1 cut(s) | 214 |
| BsmFI | GGGAC | 1 cut(s) | 488 |
| BsnI | GGCC | 2 cut(s) | 630, 856 |
| Bso31I | GGTCTC | 1 cut(s) | 214 |
| BsoBI | CYCGRG | 1 cut(s) | 42 |
| Bsp1286I | GDGCHC | 1 cut(s) | 486 |
| Bsp143I | GATC | 2 cut(s) | 465, 548 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 48 |
| Bsp19I | CCATGG | 1 cut(s) | 771 |
| BspACI | CCGC | 3 cut(s) | 283, 558, 720 |
| BspANI | GGCC | 2 cut(s) | 630, 856 |
| BspCNI | CTCAG | 2 cut(s) | 815, 864 |
| BspDI | ATCGAT | 1 cut(s) | 447 |
| BspHI | TCATGA | 1 cut(s) | 478 |
| BspLI | GGNNCC | 4 cut(s) | 584, 643, 718, 799 |
| BspPI | GGATC | 2 cut(s) | 473, 543 |
| BspT107I | GGYRCC | 3 cut(s) | 641, 716, 797 |
| BspTNI | GGTCTC | 1 cut(s) | 214 |
| BsrDI | GCAATG | 2 cut(s) | 384, 501 |
| BsrI | ACTGG | 2 cut(s) | 53, 166 |
| BssECI | CCNNGG | 2 cut(s) | 740, 771 |
| BssMI | GATC | 2 cut(s) | 465, 548 |
| BssNI | GRCGYC | 1 cut(s) | 642 |
| BssSI | CACGAG | 1 cut(s) | 527 |
| BssT1I | CCWWGG | 2 cut(s) | 740, 771 |
| Bst2BI | CACGAG | 1 cut(s) | 527 |
| Bst2UI | CCWGG | 1 cut(s) | 30 |
| Bst6I | CTCTTC | 1 cut(s) | 583 |
| BstACI | GRCGYC | 1 cut(s) | 642 |
| BstBAI | YACGTR | 1 cut(s) | 59 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 75, 748 |
| BstDEI | CTNAG | 6 cut(s) | 48, 106, 432, 654, 802, 851 |
| BstDSI | CCRYGG | 1 cut(s) | 771 |
| BstF5I | GGATG | 3 cut(s) | 101, 132, 522 |
| BstH2I | RGCGCY | 1 cut(s) | 645 |
| BstHHI | GCGC | 1 cut(s) | 644 |
| BstKTI | GATC | 2 cut(s) | 468, 551 |
| BstMAI | GTCTC | 1 cut(s) | 214 |
| BstMBI | GATC | 2 cut(s) | 465, 548 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 89, 98, 119, 680 |
| BstNI | CCWGG | 1 cut(s) | 30 |
| BstNSI | RCATGY | 2 cut(s) | 250, 578 |
| BstSCI | CCNGG | 1 cut(s) | 28 |
| BstV1I | GCAGC | 1 cut(s) | 799 |
| BstV2I | GAAGAC | 2 cut(s) | 195, 398 |
| BstX2I | RGATCY | 1 cut(s) | 548 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 638 |
| BstYI | RGATCY | 1 cut(s) | 548 |
| Bsu15I | ATCGAT | 1 cut(s) | 447 |
| Bsu36I | CCTNAGG | 1 cut(s) | 802 |
| BsuI | GTATCC | 1 cut(s) | 26 |
| BsuRI | GGCC | 2 cut(s) | 630, 856 |
| BsuTUI | ATCGAT | 1 cut(s) | 447 |
| BtgI | CCRYGG | 1 cut(s) | 771 |
| BtsCI | GGATG | 3 cut(s) | 101, 132, 522 |
| BtsIMutI | CAGTG | 1 cut(s) | 309 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 75, 748 |
| CciI | TCATGA | 1 cut(s) | 478 |
| CfoI | GCGC | 1 cut(s) | 644 |
| ClaI | ATCGAT | 1 cut(s) | 447 |
| CseI | GACGC | 2 cut(s) | 769, 856 |
| Csp6I | GTAC | 2 cut(s) | 56, 169 |
| CviAII | CATG | 7 cut(s) | 247, 479, 515, 575, 632, 772, 788 |
| CviQI | GTAC | 2 cut(s) | 56, 169 |
| DdeI | CTNAG | 6 cut(s) | 48, 106, 432, 654, 802, 851 |
| DinI | GGCGCC | 1 cut(s) | 643 |
| DpnI | GATC | 2 cut(s) | 467, 550 |
| DpnII | GATC | 2 cut(s) | 465, 548 |
| EaeI | YGGCCR | 1 cut(s) | 628 |
| Eam1104I | CTCTTC | 1 cut(s) | 583 |
| EarI | CTCTTC | 1 cut(s) | 583 |
| Ecl136II | GAGCTC | 1 cut(s) | 484 |
| Eco130I | CCWWGG | 2 cut(s) | 740, 771 |
| Eco147I | AGGCCT | 1 cut(s) | 856 |
| Eco24I | GRGCYC | 1 cut(s) | 486 |
| Eco31I | GGTCTC | 1 cut(s) | 214 |
| Eco53kI | GAGCTC | 1 cut(s) | 484 |
| Eco81I | CCTNAGG | 1 cut(s) | 802 |
| Eco88I | CYCGRG | 1 cut(s) | 42 |
| EcoICRI | GAGCTC | 1 cut(s) | 484 |
| EcoRII | CCWGG | 1 cut(s) | 28 |
| EcoT14I | CCWWGG | 2 cut(s) | 740, 771 |
| EcoT38I | GRGCYC | 1 cut(s) | 486 |
| EgeI | GGCGCC | 1 cut(s) | 643 |
| EheI | GGCGCC | 1 cut(s) | 643 |
| ErhI | CCWWGG | 2 cut(s) | 740, 771 |
| FaeI | CATG | 7 cut(s) | 250, 482, 518, 578, 635, 775, 791 |
| FaqI | GGGAC | 1 cut(s) | 488 |
| FatI | CATG | 7 cut(s) | 246, 478, 514, 574, 631, 771, 787 |
| Fnu4HI | GCNGC | 1 cut(s) | 813 |
| FokI | GGATG | 3 cut(s) | 88, 119, 509 |
| FriOI | GRGCYC | 1 cut(s) | 486 |
| Fsp4HI | GCNGC | 1 cut(s) | 813 |
| FspBI | CTAG | 2 cut(s) | 260, 741 |
| GlaI | GCGC | 1 cut(s) | 643 |
| GluI | GCNGC | 1 cut(s) | 813 |
| GsuI | CTGGAG | 1 cut(s) | 149 |
| HaeII | RGCGCY | 1 cut(s) | 645 |
| HaeIII | GGCC | 2 cut(s) | 630, 856 |
| HgaI | GACGC | 2 cut(s) | 769, 856 |
| HhaI | GCGC | 1 cut(s) | 644 |
| Hin1I | GRCGYC | 1 cut(s) | 642 |
| Hin1II | CATG | 7 cut(s) | 250, 482, 518, 578, 635, 775, 791 |
| Hin6I | GCGC | 1 cut(s) | 642 |
| HinP1I | GCGC | 1 cut(s) | 642 |
| HincII | GTYRAC | 1 cut(s) | 596 |
| HindII | GTYRAC | 1 cut(s) | 596 |
| HindIII | AAGCTT | 1 cut(s) | 81 |
| HinfI | GANTC | 5 cut(s) | 25, 38, 142, 158, 394 |
| HphI | GGTGA | 3 cut(s) | 803, 811, 818 |
| Hpy166II | GTNNAC | 2 cut(s) | 596, 730 |
| Hpy188I | TCNGA | 1 cut(s) | 846 |
| Hpy188III | TCNNGA | 5 cut(s) | 42, 254, 479, 529, 546 |
| Hpy8I | GTNNAC | 2 cut(s) | 596, 730 |
| HpyAV | CCTTC | 2 cut(s) | 192, 415 |
| HpyCH4IV | ACGT | 2 cut(s) | 58, 598 |
| HpyCH4V | TGCA | 5 cut(s) | 377, 419, 458, 578, 815 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 89, 98, 119, 680 |
| HpyF3I | CTNAG | 6 cut(s) | 48, 106, 432, 654, 802, 851 |
| HpySE526I | ACGT | 2 cut(s) | 58, 598 |
| Hsp92I | GRCGYC | 1 cut(s) | 642 |
| Hsp92II | CATG | 7 cut(s) | 250, 482, 518, 578, 635, 775, 791 |
| HspAI | GCGC | 1 cut(s) | 642 |
| KasI | GGCGCC | 1 cut(s) | 641 |
| Kzo9I | GATC | 2 cut(s) | 465, 548 |
| LmnI | GCTCC | 2 cut(s) | 491, 688 |
| Lsp1109I | GCAGC | 1 cut(s) | 799 |
| LweI | GCATC | 4 cut(s) | 17, 110, 661, 799 |
| MaeI | CTAG | 2 cut(s) | 260, 741 |
| MaeII | ACGT | 2 cut(s) | 58, 598 |
| MaeIII | GTNAC | 3 cut(s) | 239, 451, 553 |
| MalI | GATC | 2 cut(s) | 467, 550 |
| MboI | GATC | 2 cut(s) | 465, 548 |
| MboII | GAAGA | 6 cut(s) | 197, 200, 230, 403, 544, 600 |
| MflI | RGATCY | 1 cut(s) | 548 |
| MhlI | GDGCHC | 1 cut(s) | 486 |
| MlsI | TGGCCA | 1 cut(s) | 630 |
| MluCI | AATT | 1 cut(s) | 541 |
| MluNI | TGGCCA | 1 cut(s) | 630 |
| Mly113I | GGCGCC | 1 cut(s) | 642 |
| MlyI | GAGTC | 2 cut(s) | 136, 388 |
| Mox20I | TGGCCA | 1 cut(s) | 630 |
| MroXI | GAANNNNTTC | 1 cut(s) | 327 |
| MscI | TGGCCA | 1 cut(s) | 630 |
| MseI | TTAA | 2 cut(s) | 336, 344 |
| MslI | CAYNNNNRTG | 8 cut(s) | 13, 137, 153, 527, 636, 666, 789, 792 |
| Msp20I | TGGCCA | 1 cut(s) | 630 |
| MspR9I | CCNGG | 1 cut(s) | 30 |
| MvaI | CCWGG | 1 cut(s) | 30 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 89, 98, 119, 680 |
| NarI | GGCGCC | 1 cut(s) | 642 |
| NcoI | CCATGG | 1 cut(s) | 771 |
| NdeII | GATC | 2 cut(s) | 465, 548 |
| NlaIII | CATG | 7 cut(s) | 250, 482, 518, 578, 635, 775, 791 |
| NlaIV | GGNNCC | 4 cut(s) | 584, 643, 718, 799 |
| NmuCI | GTSAC | 1 cut(s) | 239 |
| NspI | RCATGY | 2 cut(s) | 250, 578 |
| PaeR7I | CTCGAG | 1 cut(s) | 42 |
| PagI | TCATGA | 1 cut(s) | 478 |
| PceI | AGGCCT | 1 cut(s) | 856 |
| PdmI | GAANNNNTTC | 1 cut(s) | 327 |
| PfeI | GAWTC | 3 cut(s) | 25, 38, 158 |
| PfoI | TCCNGGA | 1 cut(s) | 28 |
| PkrI | GCNGC | 1 cut(s) | 814 |
| PleI | GAGTC | 2 cut(s) | 136, 388 |
| PluTI | GGCGCC | 1 cut(s) | 645 |
| PpsI | GAGTC | 2 cut(s) | 136, 388 |
| Ppu21I | YACGTR | 1 cut(s) | 59 |
| Psp124BI | GAGCTC | 1 cut(s) | 486 |
| Psp6I | CCWGG | 1 cut(s) | 28 |
| PspGI | CCWGG | 1 cut(s) | 28 |
| PspN4I | GGNNCC | 4 cut(s) | 584, 643, 718, 799 |
| PsuI | RGATCY | 1 cut(s) | 548 |
| RsaI | GTAC | 2 cut(s) | 57, 170 |
| RsaNI | GTAC | 2 cut(s) | 56, 169 |
| RseI | CAYNNNNRTG | 8 cut(s) | 13, 137, 153, 527, 636, 666, 789, 792 |
| SacI | GAGCTC | 1 cut(s) | 486 |
| SaqAI | TTAA | 2 cut(s) | 336, 344 |
| SatI | GCNGC | 1 cut(s) | 813 |
| Sau3AI | GATC | 2 cut(s) | 465, 548 |
| SchI | GAGTC | 2 cut(s) | 136, 388 |
| ScrFI | CCNGG | 1 cut(s) | 30 |
| SduI | GDGCHC | 1 cut(s) | 486 |
| SfaNI | GCATC | 4 cut(s) | 17, 110, 661, 799 |
| SfoI | GGCGCC | 1 cut(s) | 643 |
| Sfr274I | CTCGAG | 1 cut(s) | 42 |
| SlaI | CTCGAG | 1 cut(s) | 42 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 13, 137, 153, 527, 636, 666, 789, 792 |
| SmlI | CTYRAG | 2 cut(s) | 42, 78 |
| SmoI | CTYRAG | 2 cut(s) | 42, 78 |
| Sse9I | AATT | 1 cut(s) | 541 |
| SseBI | AGGCCT | 1 cut(s) | 856 |
| SsiI | CCGC | 3 cut(s) | 283, 558, 720 |
| SspDI | GGCGCC | 1 cut(s) | 641 |
| SspI | AATATT | 1 cut(s) | 225 |
| SspMI | CTAG | 2 cut(s) | 260, 741 |
| SstI | GAGCTC | 1 cut(s) | 486 |
| StuI | AGGCCT | 1 cut(s) | 856 |
| StyD4I | CCNGG | 1 cut(s) | 28 |
| StyI | CCWWGG | 2 cut(s) | 740, 771 |
| TaiI | ACGT | 2 cut(s) | 61, 601 |
| TaqI | TCGA | 4 cut(s) | 19, 43, 447, 545 |
| TasI | AATT | 1 cut(s) | 541 |
| TfiI | GAWTC | 3 cut(s) | 25, 38, 158 |
| Tru1I | TTAA | 2 cut(s) | 336, 344 |
| Tru9I | TTAA | 2 cut(s) | 336, 344 |
| TscAI | CASTG | 1 cut(s) | 309 |
| TseFI | GTSAC | 1 cut(s) | 239 |
| TseI | GCWGC | 1 cut(s) | 812 |
| Tsp45I | GTSAC | 1 cut(s) | 239 |
| TspDTI | ATGAA | 4 cut(s) | 194, 198, 467, 512 |
| TspGWI | ACGGA | 5 cut(s) | 227, 478, 541, 595, 715 |
| TspRI | CASTG | 1 cut(s) | 309 |
| XceI | RCATGY | 2 cut(s) | 250, 578 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 743, 791 |
| XhoI | CTCGAG | 1 cut(s) | 42 |
| XmaJI | CCTAGG | 1 cut(s) | 740 |
| XmnI | GAANNNNTTC | 1 cut(s) | 327 |
| XspI | CTAG | 2 cut(s) | 260, 741 |