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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 474 |
| AccB1I | GGYRCC | 1 cut(s) | 429 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AclWI | GGATC | 1 cut(s) | 296 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 430 |
| AdeI | CACNNNGTG | 1 cut(s) | 709 |
| AgsI | TTSAA | 2 cut(s) | 121, 565 |
| AjiI | CACGTC | 1 cut(s) | 614 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 5 cut(s) | 149, 307, 317, 650, 701 |
| AluI | AGCT | 5 cut(s) | 149, 307, 317, 650, 701 |
| Alw21I | GWGCWC | 2 cut(s) | 309, 652 |
| Alw26I | GTCTC | 1 cut(s) | 37 |
| AlwI | GGATC | 1 cut(s) | 296 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AoxI | GGCC | 1 cut(s) | 526 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspA2I | CCTAGG | 1 cut(s) | 452 |
| AspLEI | GCGC | 2 cut(s) | 432, 571 |
| AspS9I | GGNCC | 2 cut(s) | 476, 527 |
| AvaII | GGWCC | 1 cut(s) | 476 |
| AvrII | CCTAGG | 1 cut(s) | 452 |
| BaeGI | GKGCMC | 2 cut(s) | 418, 637 |
| BanI | GGYRCC | 1 cut(s) | 429 |
| BanII | GRGCYC | 2 cut(s) | 309, 652 |
| BauI | CACGAG | 1 cut(s) | 651 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 2 cut(s) | 309, 652 |
| BccI | CCATC | 3 cut(s) | 87, 241, 555 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BclI | TGATCA | 1 cut(s) | 625 |
| BcoDI | GTCTC | 1 cut(s) | 37 |
| BfaI | CTAG | 3 cut(s) | 83, 453, 737 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 2 cut(s) | 433, 572 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| BglII | AGATCT | 1 cut(s) | 371 |
| BlnI | CCTAGG | 1 cut(s) | 452 |
| Bme18I | GGWCC | 1 cut(s) | 476 |
| BmgBI | CACGTC | 1 cut(s) | 614 |
| BmgT120I | GGNCC | 2 cut(s) | 476, 527 |
| BmiI | GGNNCC | 2 cut(s) | 431, 529 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| BsaHI | GRCGYC | 1 cut(s) | 430 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 452 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseDI | CCNNGG | 1 cut(s) | 452 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseMII | CTCAG | 1 cut(s) | 156 |
| BseSI | GKGCMC | 2 cut(s) | 418, 637 |
| BshFI | GGCC | 1 cut(s) | 528 |
| BshNI | GGYRCC | 1 cut(s) | 429 |
| BsiHKAI | GWGCWC | 2 cut(s) | 309, 652 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BsmAI | GTCTC | 1 cut(s) | 37 |
| BsnI | GGCC | 1 cut(s) | 528 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 4 cut(s) | 309, 418, 637, 652 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 5 cut(s) | 288, 371, 625, 721, 733 |
| BspANI | GGCC | 1 cut(s) | 528 |
| BspCNI | CTCAG | 1 cut(s) | 155 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 2 cut(s) | 431, 529 |
| BspMAI | CTGCAG | 1 cut(s) | 283 |
| BspPI | GGATC | 1 cut(s) | 296 |
| BspQI | GCTCTTC | 1 cut(s) | 156 |
| BspT107I | GGYRCC | 1 cut(s) | 429 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 1 cut(s) | 452 |
| BssMI | GATC | 5 cut(s) | 288, 371, 625, 721, 733 |
| BssNI | GRCGYC | 1 cut(s) | 430 |
| BssSI | CACGAG | 1 cut(s) | 651 |
| BssT1I | CCWWGG | 1 cut(s) | 452 |
| Bst2BI | CACGAG | 1 cut(s) | 651 |
| Bst6I | CTCTTC | 1 cut(s) | 156 |
| BstACI | GRCGYC | 1 cut(s) | 430 |
| BstDEI | CTNAG | 4 cut(s) | 142, 255, 420, 540 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstH2I | RGCGCY | 2 cut(s) | 433, 572 |
| BstHHI | GCGC | 2 cut(s) | 432, 571 |
| BstKTI | GATC | 5 cut(s) | 291, 374, 628, 724, 736 |
| BstMAI | GTCTC | 1 cut(s) | 37 |
| BstMBI | GATC | 5 cut(s) | 288, 371, 625, 721, 733 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 436 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstSLI | GKGCMC | 2 cut(s) | 418, 637 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 524 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BsuRI | GGCC | 1 cut(s) | 528 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtrI | CACGTC | 1 cut(s) | 614 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| BtsIMutI | CAGTG | 1 cut(s) | 327 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 2 cut(s) | 432, 571 |
| Cfr13I | GGNCC | 2 cut(s) | 476, 527 |
| CviAII | CATG | 3 cut(s) | 302, 338, 518 |
| CviJI | RGCY | 9 cut(s) | 25, 102, 149, 307, 317, 528, 546, 650, 701 |
| CviKI_1 | RGCY | 9 cut(s) | 25, 102, 149, 307, 317, 528, 546, 650, 701 |
| DdeI | CTNAG | 4 cut(s) | 142, 255, 420, 540 |
| DinI | GGCGCC | 1 cut(s) | 431 |
| DpnI | GATC | 5 cut(s) | 290, 373, 627, 723, 735 |
| DpnII | GATC | 5 cut(s) | 288, 371, 625, 721, 733 |
| DraIII | CACNNNGTG | 1 cut(s) | 709 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 474 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 474 |
| Eam1104I | CTCTTC | 1 cut(s) | 156 |
| EarI | CTCTTC | 1 cut(s) | 156 |
| Ecl136II | GAGCTC | 2 cut(s) | 307, 650 |
| Eco130I | CCWWGG | 1 cut(s) | 452 |
| Eco24I | GRGCYC | 2 cut(s) | 309, 652 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 1 cut(s) | 476 |
| Eco53kI | GAGCTC | 2 cut(s) | 307, 650 |
| EcoICRI | GAGCTC | 2 cut(s) | 307, 650 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoT14I | CCWWGG | 1 cut(s) | 452 |
| EcoT38I | GRGCYC | 2 cut(s) | 309, 652 |
| EgeI | GGCGCC | 1 cut(s) | 431 |
| EheI | GGCGCC | 1 cut(s) | 431 |
| ErhI | CCWWGG | 1 cut(s) | 452 |
| FaeI | CATG | 3 cut(s) | 305, 341, 521 |
| FatI | CATG | 3 cut(s) | 301, 337, 517 |
| FbaI | TGATCA | 1 cut(s) | 625 |
| FokI | GGATG | 1 cut(s) | 332 |
| FriOI | GRGCYC | 2 cut(s) | 309, 652 |
| FspBI | CTAG | 3 cut(s) | 83, 453, 737 |
| GlaI | GCGC | 2 cut(s) | 431, 570 |
| HaeII | RGCGCY | 2 cut(s) | 433, 572 |
| HaeIII | GGCC | 1 cut(s) | 528 |
| HapII | CCGG | 1 cut(s) | 395 |
| HhaI | GCGC | 2 cut(s) | 432, 571 |
| Hin1I | GRCGYC | 1 cut(s) | 430 |
| Hin1II | CATG | 3 cut(s) | 305, 341, 521 |
| Hin6I | GCGC | 2 cut(s) | 430, 569 |
| HinP1I | GCGC | 2 cut(s) | 430, 569 |
| HinfI | GANTC | 3 cut(s) | 65, 217, 398 |
| HpaII | CCGG | 1 cut(s) | 395 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 625 |
| Hpy188III | TCNNGA | 9 cut(s) | 77, 131, 302, 369, 395, 609, 653, 725, 737 |
| Hpy99I | CGWCG | 1 cut(s) | 615 |
| HpyAV | CCTTC | 4 cut(s) | 15, 80, 238, 494 |
| HpyCH4IV | ACGT | 3 cut(s) | 57, 469, 613 |
| HpyCH4V | TGCA | 1 cut(s) | 281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 436 |
| HpyF3I | CTNAG | 4 cut(s) | 142, 255, 420, 540 |
| HpySE526I | ACGT | 3 cut(s) | 57, 469, 613 |
| Hsp92I | GRCGYC | 1 cut(s) | 430 |
| Hsp92II | CATG | 3 cut(s) | 305, 341, 521 |
| HspAI | GCGC | 2 cut(s) | 430, 569 |
| KasI | GGCGCC | 1 cut(s) | 429 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Ksp22I | TGATCA | 1 cut(s) | 625 |
| Kzo9I | GATC | 5 cut(s) | 288, 371, 625, 721, 733 |
| LguI | GCTCTTC | 1 cut(s) | 156 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| LpnPI | CCDG | 6 cut(s) | 31, 90, 252, 267, 408, 459 |
| MaeI | CTAG | 3 cut(s) | 83, 453, 737 |
| MaeII | ACGT | 3 cut(s) | 57, 469, 613 |
| MaeIII | GTNAC | 3 cut(s) | 62, 274, 325 |
| MalI | GATC | 5 cut(s) | 290, 373, 627, 723, 735 |
| MboI | GATC | 5 cut(s) | 288, 371, 625, 721, 733 |
| MboII | GAAGA | 8 cut(s) | 20, 23, 53, 143, 226, 668, 731, 740 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 4 cut(s) | 309, 418, 637, 652 |
| MluCI | AATT | 3 cut(s) | 173, 267, 403 |
| Mly113I | GGCGCC | 1 cut(s) | 430 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MnlI | CCTC | 2 cut(s) | 520, 582 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MseI | TTAA | 3 cut(s) | 159, 167, 588 |
| MslI | CAYNNNNRTG | 2 cut(s) | 522, 552 |
| MspI | CCGG | 1 cut(s) | 395 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 436 |
| NarI | GGCGCC | 1 cut(s) | 430 |
| NdeII | GATC | 5 cut(s) | 288, 371, 625, 721, 733 |
| NlaIII | CATG | 3 cut(s) | 305, 341, 521 |
| NlaIV | GGNNCC | 2 cut(s) | 431, 529 |
| NmuCI | GTSAC | 2 cut(s) | 62, 325 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PciSI | GCTCTTC | 1 cut(s) | 156 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 398 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PluTI | GGCGCC | 1 cut(s) | 433 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| Psp124BI | GAGCTC | 2 cut(s) | 309, 652 |
| PspN4I | GGNNCC | 2 cut(s) | 431, 529 |
| PspPI | GGNCC | 2 cut(s) | 476, 527 |
| PstI | CTGCAG | 1 cut(s) | 283 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 2 cut(s) | 522, 552 |
| SacI | GAGCTC | 2 cut(s) | 309, 652 |
| SapI | GCTCTTC | 1 cut(s) | 156 |
| SaqAI | TTAA | 3 cut(s) | 159, 167, 588 |
| Sau3AI | GATC | 5 cut(s) | 288, 371, 625, 721, 733 |
| Sau96I | GGNCC | 2 cut(s) | 476, 527 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| SduI | GDGCHC | 4 cut(s) | 309, 418, 637, 652 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SfoI | GGCGCC | 1 cut(s) | 431 |
| SinI | GGWCC | 1 cut(s) | 476 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 522, 552 |
| Sse9I | AATT | 3 cut(s) | 173, 267, 403 |
| SspDI | GGCGCC | 1 cut(s) | 429 |
| SspMI | CTAG | 3 cut(s) | 83, 453, 737 |
| SstI | GAGCTC | 2 cut(s) | 309, 652 |
| StyI | CCWWGG | 1 cut(s) | 452 |
| TaiI | ACGT | 3 cut(s) | 60, 472, 616 |
| TaqI | TCGA | 4 cut(s) | 39, 265, 368, 610 |
| TasI | AATT | 3 cut(s) | 173, 267, 403 |
| TfiI | GAWTC | 1 cut(s) | 398 |
| Tru1I | TTAA | 3 cut(s) | 159, 167, 588 |
| Tru9I | TTAA | 3 cut(s) | 159, 167, 588 |
| TscAI | CASTG | 1 cut(s) | 334 |
| TseFI | GTSAC | 2 cut(s) | 62, 325 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 325 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 290, 335 |
| TspGWI | ACGGA | 3 cut(s) | 50, 58, 301 |
| TspRI | CASTG | 1 cut(s) | 334 |
| VpaK11BI | GGWCC | 1 cut(s) | 476 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XbaI | TCTAGA | 1 cut(s) | 736 |
| XmaJI | CCTAGG | 1 cut(s) | 452 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 3 cut(s) | 83, 453, 737 |