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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 618, 776 |
| AccIII | TCCGGA | 1 cut(s) | 583 |
| AciI | CCGC | 1 cut(s) | 295 |
| AclWI | GGATC | 1 cut(s) | 555 |
| AcoI | YGGCCR | 1 cut(s) | 763 |
| AcyI | GRCGYC | 2 cut(s) | 619, 777 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 614 |
| AgsI | TTSAA | 3 cut(s) | 310, 814, 1001 |
| AjiI | CACGTC | 1 cut(s) | 70 |
| AjnI | CCWGG | 1 cut(s) | 63 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 222, 254 |
| AluBI | AGCT | 7 cut(s) | 89, 95, 496, 506, 818, 899, 950 |
| AluI | AGCT | 7 cut(s) | 89, 95, 496, 506, 818, 899, 950 |
| Alw21I | GWGCWC | 2 cut(s) | 498, 901 |
| Alw26I | GTCTC | 2 cut(s) | 226, 430 |
| AlwI | GGATC | 1 cut(s) | 555 |
| Aor13HI | TCCGGA | 1 cut(s) | 583 |
| AoxI | GGCC | 1 cut(s) | 763 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 339 |
| AspLEI | GCGC | 2 cut(s) | 621, 779 |
| AspS9I | GGNCC | 1 cut(s) | 665 |
| AsuHPI | GGTGA | 1 cut(s) | 907 |
| AvaII | GGWCC | 1 cut(s) | 665 |
| BaeGI | GKGCMC | 2 cut(s) | 607, 886 |
| BalI | TGGCCA | 1 cut(s) | 765 |
| BanI | GGYRCC | 2 cut(s) | 618, 776 |
| BanII | GRGCYC | 2 cut(s) | 498, 901 |
| BauI | CACGAG | 1 cut(s) | 900 |
| BbsI | GAAGAC | 3 cut(s) | 207, 410, 1008 |
| Bbv12I | GWGCWC | 2 cut(s) | 498, 901 |
| BccI | CCATC | 7 cut(s) | 149, 276, 430, 788, 804, 842, 987 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 449, 483 |
| BciT130I | CCWGG | 1 cut(s) | 65 |
| BclI | TGATCA | 1 cut(s) | 874 |
| BcoDI | GTCTC | 2 cut(s) | 226, 430 |
| BfaI | CTAG | 2 cut(s) | 272, 986 |
| BfoI | RGCGCY | 2 cut(s) | 622, 780 |
| Bme1390I | CCNGG | 1 cut(s) | 65 |
| Bme18I | GGWCC | 1 cut(s) | 665 |
| BmgBI | CACGTC | 1 cut(s) | 70 |
| BmgT120I | GGNCC | 1 cut(s) | 665 |
| BmiI | GGNNCC | 2 cut(s) | 620, 778 |
| BmrFI | CCNGG | 1 cut(s) | 65 |
| BpiI | GAAGAC | 3 cut(s) | 207, 410, 1008 |
| BpmI | CTGGAG | 1 cut(s) | 161 |
| BpuEI | CTTGAG | 1 cut(s) | 75 |
| Bsa29I | ATCGAT | 1 cut(s) | 459 |
| BsaHI | GRCGYC | 2 cut(s) | 619, 777 |
| BsaI | GGTCTC | 1 cut(s) | 226 |
| BsaJI | CCNNGG | 1 cut(s) | 564 |
| BsaWI | WCCGGW | 1 cut(s) | 583 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 614 |
| Bse1I | ACTGG | 2 cut(s) | 49, 178 |
| Bse3DI | GCAATG | 1 cut(s) | 396 |
| BseAI | TCCGGA | 1 cut(s) | 583 |
| BseBI | CCWGG | 1 cut(s) | 65 |
| BseCI | ATCGAT | 1 cut(s) | 459 |
| BseDI | CCNNGG | 1 cut(s) | 564 |
| BseGI | GGATG | 5 cut(s) | 144, 534, 662, 857, 998 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 614 |
| BseMI | GCAATG | 1 cut(s) | 396 |
| BseNI | ACTGG | 2 cut(s) | 49, 178 |
| BseRI | GAGGAG | 1 cut(s) | 810 |
| BseSI | GKGCMC | 2 cut(s) | 607, 886 |
| BseYI | CCCAGC | 1 cut(s) | 1017 |
| BshFI | GGCC | 1 cut(s) | 765 |
| BshNI | GGYRCC | 2 cut(s) | 618, 776 |
| BshVI | ATCGAT | 1 cut(s) | 459 |
| BsiHKAI | GWGCWC | 2 cut(s) | 498, 901 |
| BsiSI | CCGG | 1 cut(s) | 584 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 614 |
| BsmAI | GTCTC | 2 cut(s) | 226, 430 |
| BsmBI | CGTCTC | 1 cut(s) | 430 |
| BsmI | GAATGC | 1 cut(s) | 216 |
| BsnI | GGCC | 1 cut(s) | 765 |
| Bso31I | GGTCTC | 1 cut(s) | 226 |
| Bsp1286I | GDGCHC | 4 cut(s) | 498, 607, 886, 901 |
| Bsp13I | TCCGGA | 1 cut(s) | 583 |
| Bsp143I | GATC | 6 cut(s) | 378, 560, 874, 970, 982, 1021 |
| BspACI | CCGC | 1 cut(s) | 295 |
| BspANI | GGCC | 1 cut(s) | 765 |
| BspDI | ATCGAT | 1 cut(s) | 459 |
| BspEI | TCCGGA | 1 cut(s) | 583 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspLI | GGNNCC | 2 cut(s) | 620, 778 |
| BspPI | GGATC | 1 cut(s) | 555 |
| BspT107I | GGYRCC | 2 cut(s) | 618, 776 |
| BspTNI | GGTCTC | 1 cut(s) | 226 |
| BsrDI | GCAATG | 1 cut(s) | 396 |
| BsrI | ACTGG | 2 cut(s) | 49, 178 |
| BssECI | CCNNGG | 1 cut(s) | 564 |
| BssMI | GATC | 6 cut(s) | 378, 560, 874, 970, 982, 1021 |
| BssNI | GRCGYC | 2 cut(s) | 619, 777 |
| BssSI | CACGAG | 1 cut(s) | 900 |
| Bst2BI | CACGAG | 1 cut(s) | 900 |
| Bst2UI | CCWGG | 1 cut(s) | 65 |
| Bst6I | CTCTTC | 1 cut(s) | 718 |
| BstACI | GRCGYC | 2 cut(s) | 619, 777 |
| BstC8I | GCNNGC | 1 cut(s) | 87 |
| BstDEI | CTNAG | 4 cut(s) | 118, 444, 641, 789 |
| BstDSI | CCRYGG | 1 cut(s) | 564 |
| BstF5I | GGATG | 5 cut(s) | 144, 534, 662, 857, 998 |
| BstH2I | RGCGCY | 2 cut(s) | 622, 780 |
| BstHHI | GCGC | 2 cut(s) | 621, 779 |
| BstKTI | GATC | 6 cut(s) | 381, 563, 877, 973, 985, 1024 |
| BstMAI | GTCTC | 2 cut(s) | 226, 430 |
| BstMBI | GATC | 6 cut(s) | 378, 560, 874, 970, 982, 1021 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 131, 625, 815, 947 |
| BstNI | CCWGG | 1 cut(s) | 65 |
| BstSCI | CCNGG | 1 cut(s) | 63 |
| BstSLI | GKGCMC | 2 cut(s) | 607, 886 |
| BstV2I | GAAGAC | 3 cut(s) | 207, 410, 1008 |
| BstX2I | RGATCY | 1 cut(s) | 560 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 773, 1013 |
| BstYI | RGATCY | 1 cut(s) | 560 |
| Bsu15I | ATCGAT | 1 cut(s) | 459 |
| BsuRI | GGCC | 1 cut(s) | 765 |
| BsuTUI | ATCGAT | 1 cut(s) | 459 |
| BtgI | CCRYGG | 1 cut(s) | 564 |
| BtrI | CACGTC | 1 cut(s) | 70 |
| BtsCI | GGATG | 5 cut(s) | 144, 534, 662, 857, 998 |
| Cac8I | GCNNGC | 1 cut(s) | 87 |
| CciI | TCATGA | 1 cut(s) | 490 |
| CfoI | GCGC | 2 cut(s) | 621, 779 |
| Cfr13I | GGNCC | 1 cut(s) | 665 |
| ClaI | ATCGAT | 1 cut(s) | 459 |
| CseI | GACGC | 1 cut(s) | 815 |
| CviAII | CATG | 3 cut(s) | 491, 527, 767 |
| DdeI | CTNAG | 4 cut(s) | 118, 444, 641, 789 |
| DinI | GGCGCC | 2 cut(s) | 620, 778 |
| DpnI | GATC | 6 cut(s) | 380, 562, 876, 972, 984, 1023 |
| DpnII | GATC | 6 cut(s) | 378, 560, 874, 970, 982, 1021 |
| EaeI | YGGCCR | 1 cut(s) | 763 |
| Eam1104I | CTCTTC | 1 cut(s) | 718 |
| EarI | CTCTTC | 1 cut(s) | 718 |
| Ecl136II | GAGCTC | 2 cut(s) | 496, 899 |
| Eco24I | GRGCYC | 2 cut(s) | 498, 901 |
| Eco31I | GGTCTC | 1 cut(s) | 226 |
| Eco47I | GGWCC | 1 cut(s) | 665 |
| Eco53kI | GAGCTC | 2 cut(s) | 496, 899 |
| EcoICRI | GAGCTC | 2 cut(s) | 496, 899 |
| EcoRII | CCWGG | 1 cut(s) | 63 |
| EcoT38I | GRGCYC | 2 cut(s) | 498, 901 |
| EgeI | GGCGCC | 2 cut(s) | 620, 778 |
| EheI | GGCGCC | 2 cut(s) | 620, 778 |
| Esp3I | CGTCTC | 1 cut(s) | 430 |
| FaeI | CATG | 3 cut(s) | 494, 530, 770 |
| FatI | CATG | 3 cut(s) | 490, 526, 766 |
| FauNDI | CATATG | 1 cut(s) | 162 |
| FbaI | TGATCA | 1 cut(s) | 874 |
| FokI | GGATG | 5 cut(s) | 131, 521, 669, 864, 1005 |
| FriOI | GRGCYC | 2 cut(s) | 498, 901 |
| FspBI | CTAG | 2 cut(s) | 272, 986 |
| GlaI | GCGC | 2 cut(s) | 620, 778 |
| GsaI | CCCAGC | 1 cut(s) | 1021 |
| GsuI | CTGGAG | 1 cut(s) | 161 |
| HaeII | RGCGCY | 2 cut(s) | 622, 780 |
| HaeIII | GGCC | 1 cut(s) | 765 |
| HapII | CCGG | 1 cut(s) | 584 |
| HgaI | GACGC | 1 cut(s) | 815 |
| HhaI | GCGC | 2 cut(s) | 621, 779 |
| Hin1I | GRCGYC | 2 cut(s) | 619, 777 |
| Hin1II | CATG | 3 cut(s) | 494, 530, 770 |
| Hin6I | GCGC | 2 cut(s) | 619, 777 |
| HinP1I | GCGC | 2 cut(s) | 619, 777 |
| HincII | GTYRAC | 1 cut(s) | 731 |
| HindII | GTYRAC | 1 cut(s) | 731 |
| HindIII | AAGCTT | 1 cut(s) | 93 |
| HinfI | GANTC | 6 cut(s) | 154, 254, 406, 456, 477, 587 |
| HpaII | CCGG | 1 cut(s) | 584 |
| HphI | GGTGA | 1 cut(s) | 907 |
| Hpy166II | GTNNAC | 1 cut(s) | 731 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 334, 874 |
| Hpy188III | TCNNGA | 9 cut(s) | 266, 320, 491, 558, 584, 858, 902, 974, 986 |
| Hpy8I | GTNNAC | 1 cut(s) | 731 |
| HpyAV | CCTTC | 1 cut(s) | 683 |
| HpyCH4IV | ACGT | 3 cut(s) | 69, 246, 733 |
| HpyCH4V | TGCA | 3 cut(s) | 389, 431, 470 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 131, 625, 815, 947 |
| HpyF3I | CTNAG | 4 cut(s) | 118, 444, 641, 789 |
| HpySE526I | ACGT | 3 cut(s) | 69, 246, 733 |
| Hsp92I | GRCGYC | 2 cut(s) | 619, 777 |
| Hsp92II | CATG | 3 cut(s) | 494, 530, 770 |
| HspAI | GCGC | 2 cut(s) | 619, 777 |
| KasI | GGCGCC | 2 cut(s) | 618, 776 |
| Kpn2I | TCCGGA | 1 cut(s) | 583 |
| Ksp22I | TGATCA | 1 cut(s) | 874 |
| Kzo9I | GATC | 6 cut(s) | 378, 560, 874, 970, 982, 1021 |
| LmnI | GCTCC | 4 cut(s) | 34, 180, 503, 823 |
| MaeI | CTAG | 2 cut(s) | 272, 986 |
| MaeII | ACGT | 3 cut(s) | 69, 246, 733 |
| MaeIII | GTNAC | 4 cut(s) | 5, 251, 463, 913 |
| MalI | GATC | 6 cut(s) | 380, 562, 876, 972, 984, 1023 |
| MboI | GATC | 6 cut(s) | 378, 560, 874, 970, 982, 1021 |
| MflI | RGATCY | 1 cut(s) | 560 |
| MhlI | GDGCHC | 4 cut(s) | 498, 607, 886, 901 |
| MlsI | TGGCCA | 1 cut(s) | 765 |
| MluCI | AATT | 7 cut(s) | 17, 169, 362, 553, 592, 673, 909 |
| MluNI | TGGCCA | 1 cut(s) | 765 |
| Mly113I | GGCGCC | 2 cut(s) | 619, 777 |
| MlyI | GAGTC | 3 cut(s) | 148, 248, 400 |
| MnlI | CCTC | 8 cut(s) | 115, 302, 719, 739, 743, 769, 831, 982 |
| Mox20I | TGGCCA | 1 cut(s) | 765 |
| MroI | TCCGGA | 1 cut(s) | 583 |
| MroXI | GAANNNNTTC | 1 cut(s) | 339 |
| MscI | TGGCCA | 1 cut(s) | 765 |
| MseI | TTAA | 2 cut(s) | 348, 356 |
| MslI | CAYNNNNRTG | 5 cut(s) | 149, 539, 655, 771, 801 |
| Msp20I | TGGCCA | 1 cut(s) | 765 |
| MspI | CCGG | 1 cut(s) | 584 |
| MspR9I | CCNGG | 1 cut(s) | 65 |
| Mva1269I | GAATGC | 1 cut(s) | 216 |
| MvaI | CCWGG | 1 cut(s) | 65 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 131, 625, 815, 947 |
| NarI | GGCGCC | 2 cut(s) | 619, 777 |
| NdeI | CATATG | 1 cut(s) | 162 |
| NdeII | GATC | 6 cut(s) | 378, 560, 874, 970, 982, 1021 |
| NlaIII | CATG | 3 cut(s) | 494, 530, 770 |
| NlaIV | GGNNCC | 2 cut(s) | 620, 778 |
| NmuCI | GTSAC | 2 cut(s) | 251, 913 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PctI | GAATGC | 1 cut(s) | 216 |
| PdmI | GAANNNNTTC | 1 cut(s) | 339 |
| PfeI | GAWTC | 3 cut(s) | 456, 477, 587 |
| PleI | GAGTC | 3 cut(s) | 148, 248, 400 |
| PluTI | GGCGCC | 2 cut(s) | 622, 780 |
| PpsI | GAGTC | 3 cut(s) | 148, 248, 400 |
| Psp124BI | GAGCTC | 2 cut(s) | 498, 901 |
| Psp6I | CCWGG | 1 cut(s) | 63 |
| PspFI | CCCAGC | 1 cut(s) | 1017 |
| PspGI | CCWGG | 1 cut(s) | 63 |
| PspN4I | GGNNCC | 2 cut(s) | 620, 778 |
| PspPI | GGNCC | 1 cut(s) | 665 |
| PsuI | RGATCY | 1 cut(s) | 560 |
| RseI | CAYNNNNRTG | 5 cut(s) | 149, 539, 655, 771, 801 |
| SacI | GAGCTC | 2 cut(s) | 498, 901 |
| SaqAI | TTAA | 2 cut(s) | 348, 356 |
| Sau3AI | GATC | 6 cut(s) | 378, 560, 874, 970, 982, 1021 |
| Sau96I | GGNCC | 1 cut(s) | 665 |
| SchI | GAGTC | 3 cut(s) | 148, 248, 400 |
| ScrFI | CCNGG | 1 cut(s) | 65 |
| SduI | GDGCHC | 4 cut(s) | 498, 607, 886, 901 |
| SfoI | GGCGCC | 2 cut(s) | 620, 778 |
| SinI | GGWCC | 1 cut(s) | 665 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 149, 539, 655, 771, 801 |
| SmlI | CTYRAG | 1 cut(s) | 90 |
| SmoI | CTYRAG | 1 cut(s) | 90 |
| Sse9I | AATT | 7 cut(s) | 17, 169, 362, 553, 592, 673, 909 |
| SsiI | CCGC | 1 cut(s) | 295 |
| SspDI | GGCGCC | 2 cut(s) | 618, 776 |
| SspMI | CTAG | 2 cut(s) | 272, 986 |
| SstI | GAGCTC | 2 cut(s) | 498, 901 |
| StyD4I | CCNGG | 1 cut(s) | 63 |
| TaiI | ACGT | 3 cut(s) | 72, 249, 736 |
| TaqI | TCGA | 5 cut(s) | 228, 454, 459, 557, 859 |
| TasI | AATT | 7 cut(s) | 17, 169, 362, 553, 592, 673, 909 |
| TfiI | GAWTC | 3 cut(s) | 456, 477, 587 |
| Tru1I | TTAA | 2 cut(s) | 348, 356 |
| Tru9I | TTAA | 2 cut(s) | 348, 356 |
| TseFI | GTSAC | 2 cut(s) | 251, 913 |
| Tsp45I | GTSAC | 2 cut(s) | 251, 913 |
| TspDTI | ATGAA | 6 cut(s) | 206, 210, 479, 524, 557, 845 |
| TspGWI | ACGGA | 1 cut(s) | 553 |
| VpaK11BI | GGWCC | 1 cut(s) | 665 |
| XbaI | TCTAGA | 1 cut(s) | 985 |
| XmnI | GAANNNNTTC | 1 cut(s) | 339 |
| XspI | CTAG | 2 cut(s) | 272, 986 |