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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 876 |
| AatII | GACGTC | 1 cut(s) | 75 |
| AccB1I | GGYRCC | 2 cut(s) | 831, 1028 |
| AciI | CCGC | 2 cut(s) | 142, 226 |
| AclI | AACGTT | 1 cut(s) | 99 |
| AclWI | GGATC | 3 cut(s) | 698, 768, 1006 |
| AcsI | RAATTY | 1 cut(s) | 575 |
| AcyI | GRCGYC | 3 cut(s) | 72, 832, 1029 |
| AfaI | GTAC | 2 cut(s) | 395, 761 |
| AgsI | TTSAA | 5 cut(s) | 62, 523, 964, 1065, 1077 |
| AjiI | CACGTC | 3 cut(s) | 91, 121, 283 |
| AjnI | CCWGG | 2 cut(s) | 252, 276 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 42, 74, 435, 467 |
| AluBI | AGCT | 7 cut(s) | 7, 68, 132, 302, 308, 709, 719 |
| AluI | AGCT | 7 cut(s) | 7, 68, 132, 302, 308, 709, 719 |
| Alw21I | GWGCWC | 1 cut(s) | 711 |
| Alw26I | GTCTC | 1 cut(s) | 439 |
| AlwI | GGATC | 3 cut(s) | 698, 768, 1006 |
| AoxI | GGCC | 3 cut(s) | 240, 913, 1086 |
| ApeKI | GCWGC | 4 cut(s) | 4, 65, 326, 1043 |
| ApoI | RAATTY | 1 cut(s) | 575 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 552 |
| AspA2I | CCTAGG | 1 cut(s) | 1033 |
| AspLEI | GCGC | 5 cut(s) | 510, 818, 834, 929, 1031 |
| AspS9I | GGNCC | 1 cut(s) | 1087 |
| AsuC2I | CCSGG | 1 cut(s) | 15 |
| AsuHPI | GGTGA | 4 cut(s) | 131, 1034, 1042, 1049 |
| AvrII | CCTAGG | 1 cut(s) | 1033 |
| BanI | GGYRCC | 2 cut(s) | 831, 1028 |
| BanII | GRGCYC | 1 cut(s) | 711 |
| BbsI | GAAGAC | 1 cut(s) | 623 |
| Bbv12I | GWGCWC | 1 cut(s) | 711 |
| BbvI | GCAGC | 4 cut(s) | 16, 77, 338, 1030 |
| BccI | CCATC | 7 cut(s) | 362, 643, 644, 681, 954, 1019, 1023 |
| BceAI | ACGGC | 1 cut(s) | 38 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 662, 696 |
| BciT130I | CCWGG | 2 cut(s) | 254, 278 |
| BciVI | GTATCC | 1 cut(s) | 853 |
| BcnI | CCSGG | 1 cut(s) | 15 |
| BcoDI | GTCTC | 1 cut(s) | 439 |
| BfaI | CTAG | 3 cut(s) | 273, 485, 1034 |
| BfmI | CTRYAG | 2 cut(s) | 2, 133 |
| BfoI | RGCGCY | 3 cut(s) | 835, 930, 1032 |
| BfuI | GTATCC | 1 cut(s) | 853 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 335 |
| BisI | GCNGC | 4 cut(s) | 5, 66, 327, 1044 |
| BlnI | CCTAGG | 1 cut(s) | 1033 |
| BlsI | GCNGC | 4 cut(s) | 6, 67, 328, 1045 |
| BmcAI | AGTACT | 1 cut(s) | 761 |
| Bme1390I | CCNGG | 3 cut(s) | 15, 254, 278 |
| BmgBI | CACGTC | 3 cut(s) | 91, 121, 283 |
| BmgT120I | GGNCC | 1 cut(s) | 1087 |
| BmiI | GGNNCC | 2 cut(s) | 833, 1030 |
| BmrFI | CCNGG | 3 cut(s) | 15, 254, 278 |
| BmsI | GCATC | 2 cut(s) | 241, 1030 |
| BpiI | GAAGAC | 1 cut(s) | 623 |
| BpmI | CTGGAG | 1 cut(s) | 374 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1083 |
| BpuEI | CTTGAG | 4 cut(s) | 19, 221, 251, 288 |
| BpuMI | CCSGG | 1 cut(s) | 15 |
| Bsa29I | ATCGAT | 1 cut(s) | 672 |
| BsaHI | GRCGYC | 3 cut(s) | 72, 832, 1029 |
| BsaI | GGTCTC | 1 cut(s) | 439 |
| BsaJI | CCNNGG | 2 cut(s) | 777, 1033 |
| Bse1I | ACTGG | 2 cut(s) | 196, 391 |
| Bse3DI | GCAATG | 1 cut(s) | 111 |
| BseBI | CCWGG | 2 cut(s) | 254, 278 |
| BseCI | ATCGAT | 1 cut(s) | 672 |
| BseDI | CCNNGG | 2 cut(s) | 777, 1033 |
| BseGI | GGATG | 5 cut(s) | 153, 357, 385, 692, 747 |
| BseMI | GCAATG | 1 cut(s) | 111 |
| BseMII | CTCAG | 2 cut(s) | 978, 1097 |
| BseNI | ACTGG | 2 cut(s) | 196, 391 |
| BseXI | GCAGC | 4 cut(s) | 16, 77, 338, 1030 |
| BshFI | GGCC | 3 cut(s) | 242, 915, 1088 |
| BshNI | GGYRCC | 2 cut(s) | 831, 1028 |
| BshVI | ATCGAT | 1 cut(s) | 672 |
| BsiHKAI | GWGCWC | 1 cut(s) | 711 |
| BsiSI | CCGG | 2 cut(s) | 15, 684 |
| BsmAI | GTCTC | 1 cut(s) | 439 |
| BsnI | GGCC | 3 cut(s) | 242, 915, 1088 |
| Bso31I | GGTCTC | 1 cut(s) | 439 |
| Bsp1286I | GDGCHC | 1 cut(s) | 711 |
| Bsp143I | GATC | 4 cut(s) | 591, 690, 773, 1011 |
| BspACI | CCGC | 2 cut(s) | 142, 226 |
| BspANI | GGCC | 3 cut(s) | 242, 915, 1088 |
| BspCNI | CTCAG | 2 cut(s) | 979, 1096 |
| BspDI | ATCGAT | 1 cut(s) | 672 |
| BspHI | TCATGA | 1 cut(s) | 703 |
| BspLI | GGNNCC | 2 cut(s) | 833, 1030 |
| BspMAI | CTGCAG | 1 cut(s) | 6 |
| BspPI | GGATC | 3 cut(s) | 698, 768, 1006 |
| BspT107I | GGYRCC | 2 cut(s) | 831, 1028 |
| BspTNI | GGTCTC | 1 cut(s) | 439 |
| BsrDI | GCAATG | 1 cut(s) | 111 |
| BsrI | ACTGG | 2 cut(s) | 196, 391 |
| BssECI | CCNNGG | 2 cut(s) | 777, 1033 |
| BssMI | GATC | 4 cut(s) | 591, 690, 773, 1011 |
| BssNI | GRCGYC | 3 cut(s) | 72, 832, 1029 |
| BssT1I | CCWWGG | 1 cut(s) | 1033 |
| Bst2UI | CCWGG | 2 cut(s) | 254, 278 |
| Bst4CI | ACNGT | 1 cut(s) | 292 |
| BstACI | GRCGYC | 3 cut(s) | 72, 832, 1029 |
| BstC8I | GCNNGC | 4 cut(s) | 115, 230, 300, 506 |
| BstDEI | CTNAG | 8 cut(s) | 331, 657, 822, 854, 939, 987, 1083, 1149 |
| BstDSI | CCRYGG | 1 cut(s) | 777 |
| BstF5I | GGATG | 5 cut(s) | 153, 357, 385, 692, 747 |
| BstH2I | RGCGCY | 3 cut(s) | 835, 930, 1032 |
| BstHHI | GCGC | 5 cut(s) | 510, 818, 834, 929, 1031 |
| BstKTI | GATC | 4 cut(s) | 594, 693, 776, 1014 |
| BstMAI | GTCTC | 1 cut(s) | 439 |
| BstMBI | GATC | 4 cut(s) | 591, 690, 773, 1011 |
| BstNI | CCWGG | 2 cut(s) | 254, 278 |
| BstSCI | CCNGG | 3 cut(s) | 13, 252, 276 |
| BstSFI | CTRYAG | 2 cut(s) | 2, 133 |
| BstV1I | GCAGC | 4 cut(s) | 16, 77, 338, 1030 |
| BstV2I | GAAGAC | 1 cut(s) | 623 |
| BstX2I | RGATCY | 1 cut(s) | 773 |
| BstYI | RGATCY | 1 cut(s) | 773 |
| Bsu15I | ATCGAT | 1 cut(s) | 672 |
| BsuI | GTATCC | 1 cut(s) | 853 |
| BsuRI | GGCC | 3 cut(s) | 242, 915, 1088 |
| BsuTUI | ATCGAT | 1 cut(s) | 672 |
| BtgI | CCRYGG | 1 cut(s) | 777 |
| BtrI | CACGTC | 3 cut(s) | 91, 121, 283 |
| BtsCI | GGATG | 5 cut(s) | 153, 357, 385, 692, 747 |
| BtsI | GCAGTG | 1 cut(s) | 75 |
| BtsIMutI | CAGTG | 1 cut(s) | 75 |
| Cac8I | GCNNGC | 4 cut(s) | 115, 230, 300, 506 |
| CciI | TCATGA | 1 cut(s) | 703 |
| CfoI | GCGC | 5 cut(s) | 510, 818, 834, 929, 1031 |
| Cfr13I | GGNCC | 1 cut(s) | 1087 |
| ClaI | ATCGAT | 1 cut(s) | 672 |
| CseI | GACGC | 1 cut(s) | 965 |
| Csp6I | GTAC | 2 cut(s) | 394, 760 |
| CviAII | CATG | 5 cut(s) | 464, 704, 740, 1009, 1019 |
| CviQI | GTAC | 2 cut(s) | 394, 760 |
| DdeI | CTNAG | 8 cut(s) | 331, 657, 822, 854, 939, 987, 1083, 1149 |
| DinI | GGCGCC | 2 cut(s) | 833, 1030 |
| DpnI | GATC | 4 cut(s) | 593, 692, 775, 1013 |
| DpnII | GATC | 4 cut(s) | 591, 690, 773, 1011 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 876 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 876 |
| EciI | GGCGGA | 1 cut(s) | 215 |
| Ecl136II | GAGCTC | 1 cut(s) | 709 |
| Eco130I | CCWWGG | 1 cut(s) | 1033 |
| Eco24I | GRGCYC | 1 cut(s) | 711 |
| Eco31I | GGTCTC | 1 cut(s) | 439 |
| Eco32I | GATATC | 1 cut(s) | 203 |
| Eco53kI | GAGCTC | 1 cut(s) | 709 |
| EcoICRI | GAGCTC | 1 cut(s) | 709 |
| EcoRI | GAATTC | 1 cut(s) | 575 |
| EcoRII | CCWGG | 2 cut(s) | 252, 276 |
| EcoRV | GATATC | 1 cut(s) | 203 |
| EcoT14I | CCWWGG | 1 cut(s) | 1033 |
| EcoT38I | GRGCYC | 1 cut(s) | 711 |
| EgeI | GGCGCC | 2 cut(s) | 833, 1030 |
| EheI | GGCGCC | 2 cut(s) | 833, 1030 |
| ErhI | CCWWGG | 1 cut(s) | 1033 |
| FaeI | CATG | 5 cut(s) | 467, 707, 743, 1012, 1022 |
| FatI | CATG | 5 cut(s) | 463, 703, 739, 1008, 1018 |
| FauNDI | CATATG | 1 cut(s) | 375 |
| Fnu4HI | GCNGC | 4 cut(s) | 5, 66, 327, 1044 |
| FokI | GGATG | 5 cut(s) | 160, 344, 392, 699, 734 |
| FriOI | GRGCYC | 1 cut(s) | 711 |
| Fsp4HI | GCNGC | 4 cut(s) | 5, 66, 327, 1044 |
| FspBI | CTAG | 3 cut(s) | 273, 485, 1034 |
| GlaI | GCGC | 5 cut(s) | 509, 817, 833, 928, 1030 |
| GluI | GCNGC | 4 cut(s) | 5, 66, 327, 1044 |
| GsuI | CTGGAG | 1 cut(s) | 374 |
| HaeII | RGCGCY | 3 cut(s) | 835, 930, 1032 |
| HaeIII | GGCC | 3 cut(s) | 242, 915, 1088 |
| HapII | CCGG | 2 cut(s) | 15, 684 |
| HgaI | GACGC | 1 cut(s) | 965 |
| HhaI | GCGC | 5 cut(s) | 510, 818, 834, 929, 1031 |
| Hin1I | GRCGYC | 3 cut(s) | 72, 832, 1029 |
| Hin1II | CATG | 5 cut(s) | 467, 707, 743, 1012, 1022 |
| Hin6I | GCGC | 5 cut(s) | 508, 816, 832, 927, 1029 |
| HinP1I | GCGC | 5 cut(s) | 508, 816, 832, 927, 1029 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HindIII | AAGCTT | 1 cut(s) | 306 |
| HpaII | CCGG | 2 cut(s) | 15, 684 |
| HphI | GGTGA | 4 cut(s) | 131, 1034, 1042, 1049 |
| Hpy166II | GTNNAC | 2 cut(s) | 124, 1134 |
| Hpy188I | TCNGA | 2 cut(s) | 547, 988 |
| Hpy188III | TCNNGA | 7 cut(s) | 198, 218, 533, 704, 771, 797, 867 |
| Hpy8I | GTNNAC | 2 cut(s) | 124, 1134 |
| HpyAV | CCTTC | 3 cut(s) | 417, 640, 893 |
| HpyCH4III | ACNGT | 1 cut(s) | 292 |
| HpyCH4IV | ACGT | 7 cut(s) | 72, 90, 99, 120, 282, 459, 871 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 104, 644, 1046 |
| HpyF3I | CTNAG | 8 cut(s) | 331, 657, 822, 854, 939, 987, 1083, 1149 |
| HpySE526I | ACGT | 7 cut(s) | 72, 90, 99, 120, 282, 459, 871 |
| Hsp92I | GRCGYC | 3 cut(s) | 72, 832, 1029 |
| Hsp92II | CATG | 5 cut(s) | 467, 707, 743, 1012, 1022 |
| HspAI | GCGC | 5 cut(s) | 508, 816, 832, 927, 1029 |
| KasI | GGCGCC | 2 cut(s) | 831, 1028 |
| Kzo9I | GATC | 4 cut(s) | 591, 690, 773, 1011 |
| LmnI | GCTCC | 2 cut(s) | 393, 716 |
| Lsp1109I | GCAGC | 4 cut(s) | 16, 77, 338, 1030 |
| LweI | GCATC | 2 cut(s) | 241, 1030 |
| MaeI | CTAG | 3 cut(s) | 273, 485, 1034 |
| MaeII | ACGT | 7 cut(s) | 72, 90, 99, 120, 282, 459, 871 |
| MaeIII | GTNAC | 4 cut(s) | 73, 137, 152, 676 |
| MalI | GATC | 4 cut(s) | 593, 692, 775, 1013 |
| MboI | GATC | 4 cut(s) | 591, 690, 773, 1011 |
| MboII | GAAGA | 1 cut(s) | 628 |
| MflI | RGATCY | 1 cut(s) | 773 |
| MhlI | GDGCHC | 1 cut(s) | 711 |
| MluCI | AATT | 6 cut(s) | 164, 528, 575, 661, 766, 805 |
| Mly113I | GGCGCC | 2 cut(s) | 832, 1029 |
| MlyI | GAGTC | 4 cut(s) | 361, 461, 613, 992 |
| MnlI | CCTC | 9 cut(s) | 92, 328, 821, 829, 889, 919, 981, 1111, 1132 |
| MroXI | GAANNNNTTC | 1 cut(s) | 552 |
| MseI | TTAA | 2 cut(s) | 561, 569 |
| MslI | CAYNNNNRTG | 6 cut(s) | 362, 378, 752, 951, 1020, 1023 |
| MspA1I | CMGCKG | 2 cut(s) | 68, 144 |
| MspI | CCGG | 2 cut(s) | 15, 684 |
| MspR9I | CCNGG | 3 cut(s) | 15, 254, 278 |
| MvaI | CCWGG | 2 cut(s) | 254, 278 |
| NarI | GGCGCC | 2 cut(s) | 832, 1029 |
| NciI | CCSGG | 1 cut(s) | 15 |
| NdeI | CATATG | 1 cut(s) | 375 |
| NdeII | GATC | 4 cut(s) | 591, 690, 773, 1011 |
| NlaIII | CATG | 5 cut(s) | 467, 707, 743, 1012, 1022 |
| NlaIV | GGNNCC | 2 cut(s) | 833, 1030 |
| NmuCI | GTSAC | 2 cut(s) | 73, 137 |
| PagI | TCATGA | 1 cut(s) | 703 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 96 |
| PdmI | GAANNNNTTC | 1 cut(s) | 552 |
| PfeI | GAWTC | 6 cut(s) | 249, 262, 383, 669, 800, 998 |
| PfoI | TCCNGGA | 1 cut(s) | 252 |
| PkrI | GCNGC | 4 cut(s) | 6, 67, 328, 1045 |
| PleI | GAGTC | 4 cut(s) | 361, 461, 613, 991 |
| PluTI | GGCGCC | 2 cut(s) | 835, 1032 |
| PpsI | GAGTC | 4 cut(s) | 361, 461, 613, 991 |
| Psp124BI | GAGCTC | 1 cut(s) | 711 |
| Psp1406I | AACGTT | 1 cut(s) | 99 |
| Psp6I | CCWGG | 2 cut(s) | 252, 276 |
| PspGI | CCWGG | 2 cut(s) | 252, 276 |
| PspN4I | GGNNCC | 2 cut(s) | 833, 1030 |
| PspPI | GGNCC | 1 cut(s) | 1087 |
| PstI | CTGCAG | 1 cut(s) | 6 |
| PsuI | RGATCY | 1 cut(s) | 773 |
| PvuII | CAGCTG | 1 cut(s) | 68 |
| RsaI | GTAC | 2 cut(s) | 395, 761 |
| RsaNI | GTAC | 2 cut(s) | 394, 760 |
| RseI | CAYNNNNRTG | 6 cut(s) | 362, 378, 752, 951, 1020, 1023 |
| SacI | GAGCTC | 1 cut(s) | 711 |
| SaqAI | TTAA | 2 cut(s) | 561, 569 |
| SatI | GCNGC | 4 cut(s) | 5, 66, 327, 1044 |
| Sau3AI | GATC | 4 cut(s) | 591, 690, 773, 1011 |
| Sau96I | GGNCC | 1 cut(s) | 1087 |
| ScaI | AGTACT | 1 cut(s) | 761 |
| SchI | GAGTC | 4 cut(s) | 361, 461, 613, 992 |
| ScrFI | CCNGG | 3 cut(s) | 15, 254, 278 |
| SduI | GDGCHC | 1 cut(s) | 711 |
| SfaNI | GCATC | 2 cut(s) | 241, 1030 |
| SfcI | CTRYAG | 2 cut(s) | 2, 133 |
| SfoI | GGCGCC | 2 cut(s) | 833, 1030 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 362, 378, 752, 951, 1020, 1023 |
| SmlI | CTYRAG | 5 cut(s) | 8, 34, 236, 266, 303 |
| SmoI | CTYRAG | 5 cut(s) | 8, 34, 236, 266, 303 |
| Sse9I | AATT | 6 cut(s) | 164, 528, 575, 661, 766, 805 |
| SsiI | CCGC | 2 cut(s) | 142, 226 |
| SspDI | GGCGCC | 2 cut(s) | 831, 1028 |
| SspMI | CTAG | 3 cut(s) | 273, 485, 1034 |
| SstI | GAGCTC | 1 cut(s) | 711 |
| StyD4I | CCNGG | 3 cut(s) | 13, 252, 276 |
| StyI | CCWWGG | 1 cut(s) | 1033 |
| TaaI | ACNGT | 1 cut(s) | 292 |
| TaiI | ACGT | 7 cut(s) | 75, 93, 102, 123, 285, 462, 874 |
| TaqI | TCGA | 4 cut(s) | 441, 667, 672, 770 |
| TasI | AATT | 6 cut(s) | 164, 528, 575, 661, 766, 805 |
| TatI | WGTACW | 1 cut(s) | 759 |
| TfiI | GAWTC | 6 cut(s) | 249, 262, 383, 669, 800, 998 |
| Tru1I | TTAA | 2 cut(s) | 561, 569 |
| Tru9I | TTAA | 2 cut(s) | 561, 569 |
| TscAI | CASTG | 1 cut(s) | 82 |
| TseFI | GTSAC | 2 cut(s) | 73, 137 |
| TseI | GCWGC | 4 cut(s) | 4, 65, 326, 1043 |
| Tsp45I | GTSAC | 2 cut(s) | 73, 137 |
| TspDTI | ATGAA | 5 cut(s) | 168, 419, 423, 692, 737 |
| TspGWI | ACGGA | 1 cut(s) | 766 |
| TspRI | CASTG | 1 cut(s) | 82 |
| XapI | RAATTY | 1 cut(s) | 575 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1022 |
| XmaJI | CCTAGG | 1 cut(s) | 1033 |
| XmnI | GAANNNNTTC | 1 cut(s) | 552 |
| XspI | CTAG | 3 cut(s) | 273, 485, 1034 |
| ZraI | GACGTC | 1 cut(s) | 73 |
| ZrmI | AGTACT | 1 cut(s) | 761 |