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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 743 |
| AccIII | TCCGGA | 1 cut(s) | 35 |
| AciI | CCGC | 1 cut(s) | 107 |
| AcoI | YGGCCR | 3 cut(s) | 14, 99, 730 |
| AdeI | CACNNNGTG | 1 cut(s) | 925 |
| AfaI | GTAC | 3 cut(s) | 271, 297, 407 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 129 |
| AgsI | TTSAA | 2 cut(s) | 781, 905 |
| AhlI | ACTAGT | 1 cut(s) | 380 |
| AjnI | CCWGG | 1 cut(s) | 264 |
| AleI | CACNNNNGTG | 1 cut(s) | 536 |
| AluBI | AGCT | 6 cut(s) | 320, 439, 646, 656, 866, 917 |
| AluI | AGCT | 6 cut(s) | 320, 439, 646, 656, 866, 917 |
| Alw21I | GWGCWC | 1 cut(s) | 648 |
| Alw26I | GTCTC | 3 cut(s) | 14, 451, 580 |
| Ama87I | CYCGRG | 1 cut(s) | 278 |
| Aor13HI | TCCGGA | 1 cut(s) | 35 |
| AoxI | GGCC | 4 cut(s) | 14, 99, 252, 730 |
| ApeKI | GCWGC | 1 cut(s) | 338 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 489 |
| AspLEI | GCGC | 1 cut(s) | 787 |
| AvaI | CYCGRG | 1 cut(s) | 278 |
| BalI | TGGCCA | 1 cut(s) | 732 |
| BanI | GGYRCC | 1 cut(s) | 743 |
| BanII | GRGCYC | 2 cut(s) | 316, 648 |
| BbsI | GAAGAC | 2 cut(s) | 432, 560 |
| Bbv12I | GWGCWC | 1 cut(s) | 648 |
| BbvI | GCAGC | 1 cut(s) | 350 |
| BccI | CCATC | 2 cut(s) | 374, 771 |
| BceAI | ACGGC | 1 cut(s) | 107 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 599, 633 |
| BciT130I | CCWGG | 1 cut(s) | 266 |
| BcoDI | GTCTC | 3 cut(s) | 14, 451, 580 |
| BcuI | ACTAGT | 1 cut(s) | 380 |
| BfaI | CTAG | 3 cut(s) | 285, 381, 953 |
| BfmI | CTRYAG | 2 cut(s) | 63, 618 |
| BfoI | RGCGCY | 1 cut(s) | 788 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 347 |
| BisI | GCNGC | 1 cut(s) | 339 |
| BlsI | GCNGC | 1 cut(s) | 340 |
| Bme1390I | CCNGG | 1 cut(s) | 266 |
| BmeT110I | CYCGRG | 1 cut(s) | 278 |
| BmiI | GGNNCC | 1 cut(s) | 745 |
| BmrFI | CCNGG | 1 cut(s) | 266 |
| BmsI | GCATC | 2 cut(s) | 253, 763 |
| BpiI | GAAGAC | 2 cut(s) | 432, 560 |
| BpmI | CTGGAG | 1 cut(s) | 386 |
| BpuEI | CTTGAG | 2 cut(s) | 233, 300 |
| Bsa29I | ATCGAT | 1 cut(s) | 609 |
| BsaI | GGTCTC | 1 cut(s) | 451 |
| BsaJI | CCNNGG | 2 cut(s) | 123, 265 |
| BsaWI | WCCGGW | 1 cut(s) | 35 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 121, 151 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 129 |
| Bse118I | RCCGGY | 1 cut(s) | 4 |
| Bse1I | ACTGG | 2 cut(s) | 208, 403 |
| BseAI | TCCGGA | 1 cut(s) | 35 |
| BseBI | CCWGG | 1 cut(s) | 266 |
| BseCI | ATCGAT | 1 cut(s) | 609 |
| BseDI | CCNNGG | 2 cut(s) | 123, 265 |
| BseGI | GGATG | 3 cut(s) | 165, 369, 397 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BseMII | CTCAG | 1 cut(s) | 795 |
| BseNI | ACTGG | 2 cut(s) | 208, 403 |
| BseRI | GAGGAG | 1 cut(s) | 162 |
| BseXI | GCAGC | 1 cut(s) | 350 |
| BseYI | CCCAGC | 1 cut(s) | 431 |
| Bsh1285I | CGRYCG | 1 cut(s) | 27 |
| BshFI | GGCC | 4 cut(s) | 16, 101, 254, 732 |
| BshNI | GGYRCC | 1 cut(s) | 743 |
| BshVI | ATCGAT | 1 cut(s) | 609 |
| BsiEI | CGRYCG | 1 cut(s) | 27 |
| BsiHKAI | GWGCWC | 1 cut(s) | 648 |
| BsiHKCI | CYCGRG | 1 cut(s) | 278 |
| BsiSI | CCGG | 4 cut(s) | 5, 17, 36, 98 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BsmAI | GTCTC | 3 cut(s) | 14, 451, 580 |
| BsmBI | CGTCTC | 2 cut(s) | 14, 580 |
| BsnI | GGCC | 4 cut(s) | 16, 101, 254, 732 |
| Bso31I | GGTCTC | 1 cut(s) | 451 |
| BsoBI | CYCGRG | 1 cut(s) | 278 |
| Bsp1286I | GDGCHC | 2 cut(s) | 316, 648 |
| Bsp13I | TCCGGA | 1 cut(s) | 35 |
| Bsp143I | GATC | 3 cut(s) | 528, 937, 949 |
| BspACI | CCGC | 1 cut(s) | 107 |
| BspANI | GGCC | 4 cut(s) | 16, 101, 254, 732 |
| BspCNI | CTCAG | 1 cut(s) | 796 |
| BspDI | ATCGAT | 1 cut(s) | 609 |
| BspEI | TCCGGA | 1 cut(s) | 35 |
| BspHI | TCATGA | 1 cut(s) | 640 |
| BspLI | GGNNCC | 1 cut(s) | 745 |
| BspMAI | CTGCAG | 1 cut(s) | 622 |
| BspT107I | GGYRCC | 1 cut(s) | 743 |
| BspTNI | GGTCTC | 1 cut(s) | 451 |
| BsrFI | RCCGGY | 1 cut(s) | 4 |
| BsrI | ACTGG | 2 cut(s) | 208, 403 |
| BssAI | RCCGGY | 1 cut(s) | 4 |
| BssECI | CCNNGG | 2 cut(s) | 123, 265 |
| BssMI | GATC | 3 cut(s) | 528, 937, 949 |
| Bst2UI | CCWGG | 1 cut(s) | 266 |
| Bst4CI | ACNGT | 3 cut(s) | 25, 67, 304 |
| Bst6I | CTCTTC | 1 cut(s) | 685 |
| BstC8I | GCNNGC | 1 cut(s) | 437 |
| BstDEI | CTNAG | 4 cut(s) | 343, 594, 756, 804 |
| BstDSI | CCRYGG | 1 cut(s) | 123 |
| BstF5I | GGATG | 3 cut(s) | 165, 369, 397 |
| BstH2I | RGCGCY | 1 cut(s) | 788 |
| BstHHI | GCGC | 1 cut(s) | 787 |
| BstKTI | GATC | 3 cut(s) | 531, 940, 952 |
| BstMAI | GTCTC | 3 cut(s) | 14, 451, 580 |
| BstMBI | GATC | 3 cut(s) | 528, 937, 949 |
| BstMCI | CGRYCG | 1 cut(s) | 27 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 326, 335, 347, 356, 782, 893, 914 |
| BstNI | CCWGG | 1 cut(s) | 266 |
| BstSCI | CCNGG | 1 cut(s) | 264 |
| BstSFI | CTRYAG | 2 cut(s) | 63, 618 |
| BstV1I | GCAGC | 1 cut(s) | 350 |
| BstV2I | GAAGAC | 2 cut(s) | 432, 560 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 740 |
| Bsu15I | ATCGAT | 1 cut(s) | 609 |
| BsuRI | GGCC | 4 cut(s) | 16, 101, 254, 732 |
| BsuTUI | ATCGAT | 1 cut(s) | 609 |
| BtgI | CCRYGG | 1 cut(s) | 123 |
| BtsCI | GGATG | 3 cut(s) | 165, 369, 397 |
| BtsI | GCAGTG | 2 cut(s) | 615, 882 |
| BtsIMutI | CAGTG | 2 cut(s) | 615, 882 |
| Cac8I | GCNNGC | 1 cut(s) | 437 |
| CciI | TCATGA | 1 cut(s) | 640 |
| CfoI | GCGC | 1 cut(s) | 787 |
| Cfr10I | RCCGGY | 1 cut(s) | 4 |
| ClaI | ATCGAT | 1 cut(s) | 609 |
| Csp6I | GTAC | 3 cut(s) | 270, 296, 406 |
| CviAII | CATG | 2 cut(s) | 641, 734 |
| CviQI | GTAC | 3 cut(s) | 270, 296, 406 |
| DdeI | CTNAG | 4 cut(s) | 343, 594, 756, 804 |
| DpnI | GATC | 3 cut(s) | 530, 939, 951 |
| DpnII | GATC | 3 cut(s) | 528, 937, 949 |
| DraIII | CACNNNGTG | 1 cut(s) | 925 |
| EaeI | YGGCCR | 3 cut(s) | 14, 99, 730 |
| Eam1104I | CTCTTC | 1 cut(s) | 685 |
| EarI | CTCTTC | 1 cut(s) | 685 |
| Ecl136II | GAGCTC | 1 cut(s) | 646 |
| Eco24I | GRGCYC | 2 cut(s) | 316, 648 |
| Eco31I | GGTCTC | 1 cut(s) | 451 |
| Eco32I | GATATC | 1 cut(s) | 215 |
| Eco53kI | GAGCTC | 1 cut(s) | 646 |
| Eco88I | CYCGRG | 1 cut(s) | 278 |
| EcoICRI | GAGCTC | 1 cut(s) | 646 |
| EcoRII | CCWGG | 1 cut(s) | 264 |
| EcoRV | GATATC | 1 cut(s) | 215 |
| EcoT38I | GRGCYC | 2 cut(s) | 316, 648 |
| Esp3I | CGTCTC | 2 cut(s) | 14, 580 |
| FaeI | CATG | 2 cut(s) | 644, 737 |
| FatI | CATG | 2 cut(s) | 640, 733 |
| FauNDI | CATATG | 1 cut(s) | 387 |
| Fnu4HI | GCNGC | 1 cut(s) | 339 |
| FokI | GGATG | 3 cut(s) | 172, 356, 404 |
| FriOI | GRGCYC | 2 cut(s) | 316, 648 |
| Fsp4HI | GCNGC | 1 cut(s) | 339 |
| FspBI | CTAG | 3 cut(s) | 285, 381, 953 |
| GlaI | GCGC | 1 cut(s) | 786 |
| GluI | GCNGC | 1 cut(s) | 339 |
| GsaI | CCCAGC | 1 cut(s) | 435 |
| GsuI | CTGGAG | 1 cut(s) | 386 |
| HaeII | RGCGCY | 1 cut(s) | 788 |
| HaeIII | GGCC | 4 cut(s) | 16, 101, 254, 732 |
| HapII | CCGG | 4 cut(s) | 5, 17, 36, 98 |
| HhaI | GCGC | 1 cut(s) | 787 |
| Hin1II | CATG | 2 cut(s) | 644, 737 |
| Hin6I | GCGC | 1 cut(s) | 785 |
| HinP1I | GCGC | 1 cut(s) | 785 |
| HindIII | AAGCTT | 1 cut(s) | 318 |
| HinfI | GANTC | 9 cut(s) | 30, 85, 150, 261, 274, 395, 556, 685, 800 |
| HpaII | CCGG | 4 cut(s) | 5, 17, 36, 98 |
| Hpy188I | TCNGA | 2 cut(s) | 29, 805 |
| Hpy188III | TCNNGA | 7 cut(s) | 36, 210, 278, 470, 641, 941, 953 |
| HpyAV | CCTTC | 1 cut(s) | 577 |
| HpyCH4III | ACNGT | 3 cut(s) | 25, 67, 304 |
| HpyCH4IV | ACGT | 1 cut(s) | 294 |
| HpyCH4V | TGCA | 2 cut(s) | 581, 620 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 326, 335, 347, 356, 782, 893, 914 |
| HpyF3I | CTNAG | 4 cut(s) | 343, 594, 756, 804 |
| HpySE526I | ACGT | 1 cut(s) | 294 |
| Hsp92II | CATG | 2 cut(s) | 644, 737 |
| HspAI | GCGC | 1 cut(s) | 785 |
| Kpn2I | TCCGGA | 1 cut(s) | 35 |
| Kzo9I | GATC | 3 cut(s) | 528, 937, 949 |
| LmnI | GCTCC | 3 cut(s) | 193, 405, 653 |
| Lsp1109I | GCAGC | 1 cut(s) | 350 |
| LweI | GCATC | 2 cut(s) | 253, 763 |
| MaeI | CTAG | 3 cut(s) | 285, 381, 953 |
| MaeII | ACGT | 1 cut(s) | 294 |
| MaeIII | GTNAC | 3 cut(s) | 164, 613, 880 |
| MalI | GATC | 3 cut(s) | 530, 939, 951 |
| MboI | GATC | 3 cut(s) | 528, 937, 949 |
| MboII | GAAGA | 9 cut(s) | 80, 434, 437, 467, 565, 702, 884, 947, 956 |
| MhlI | GDGCHC | 2 cut(s) | 316, 648 |
| MlsI | TGGCCA | 1 cut(s) | 732 |
| MluCI | AATT | 3 cut(s) | 176, 512, 876 |
| MluNI | TGGCCA | 1 cut(s) | 732 |
| MlyI | GAGTC | 3 cut(s) | 159, 550, 809 |
| MmeI | TCCRAC | 3 cut(s) | 7, 178, 462 |
| MnlI | CCTC | 9 cut(s) | 123, 140, 303, 340, 686, 706, 710, 736, 798 |
| Mox20I | TGGCCA | 1 cut(s) | 732 |
| MroI | TCCGGA | 1 cut(s) | 35 |
| MroXI | GAANNNNTTC | 1 cut(s) | 489 |
| MscI | TGGCCA | 1 cut(s) | 732 |
| MseI | TTAA | 3 cut(s) | 69, 498, 506 |
| MslI | CAYNNNNRTG | 5 cut(s) | 374, 390, 536, 738, 768 |
| Msp20I | TGGCCA | 1 cut(s) | 732 |
| MspI | CCGG | 4 cut(s) | 5, 17, 36, 98 |
| MspR9I | CCNGG | 1 cut(s) | 266 |
| MvaI | CCWGG | 1 cut(s) | 266 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 326, 335, 347, 356, 782, 893, 914 |
| NdeI | CATATG | 1 cut(s) | 387 |
| NdeII | GATC | 3 cut(s) | 528, 937, 949 |
| NlaIII | CATG | 2 cut(s) | 644, 737 |
| NlaIV | GGNNCC | 1 cut(s) | 745 |
| NmeAIII | GCCGAG | 1 cut(s) | 135 |
| NmuCI | GTSAC | 2 cut(s) | 613, 880 |
| OliI | CACNNNNGTG | 1 cut(s) | 536 |
| PaeR7I | CTCGAG | 1 cut(s) | 278 |
| PagI | TCATGA | 1 cut(s) | 640 |
| PdmI | GAANNNNTTC | 1 cut(s) | 489 |
| PfeI | GAWTC | 6 cut(s) | 30, 85, 261, 274, 395, 685 |
| PkrI | GCNGC | 1 cut(s) | 340 |
| PleI | GAGTC | 3 cut(s) | 158, 550, 808 |
| PpsI | GAGTC | 3 cut(s) | 158, 550, 808 |
| Psp124BI | GAGCTC | 1 cut(s) | 648 |
| Psp6I | CCWGG | 1 cut(s) | 264 |
| PspFI | CCCAGC | 1 cut(s) | 431 |
| PspGI | CCWGG | 1 cut(s) | 264 |
| PspN4I | GGNNCC | 1 cut(s) | 745 |
| PstI | CTGCAG | 1 cut(s) | 622 |
| RsaI | GTAC | 3 cut(s) | 271, 297, 407 |
| RsaNI | GTAC | 3 cut(s) | 270, 296, 406 |
| RseI | CAYNNNNRTG | 5 cut(s) | 374, 390, 536, 738, 768 |
| SacI | GAGCTC | 1 cut(s) | 648 |
| SaqAI | TTAA | 3 cut(s) | 69, 498, 506 |
| SatI | GCNGC | 1 cut(s) | 339 |
| Sau3AI | GATC | 3 cut(s) | 528, 937, 949 |
| SchI | GAGTC | 3 cut(s) | 159, 550, 809 |
| ScrFI | CCNGG | 1 cut(s) | 266 |
| SduI | GDGCHC | 2 cut(s) | 316, 648 |
| SfaNI | GCATC | 2 cut(s) | 253, 763 |
| SfcI | CTRYAG | 2 cut(s) | 63, 618 |
| Sfr274I | CTCGAG | 1 cut(s) | 278 |
| SlaI | CTCGAG | 1 cut(s) | 278 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 374, 390, 536, 738, 768 |
| SmlI | CTYRAG | 3 cut(s) | 248, 278, 315 |
| SmoI | CTYRAG | 3 cut(s) | 248, 278, 315 |
| SpeI | ACTAGT | 1 cut(s) | 380 |
| Sse9I | AATT | 3 cut(s) | 176, 512, 876 |
| SsiI | CCGC | 1 cut(s) | 107 |
| SspMI | CTAG | 3 cut(s) | 285, 381, 953 |
| SstI | GAGCTC | 1 cut(s) | 648 |
| StyD4I | CCNGG | 1 cut(s) | 264 |
| TaaI | ACNGT | 3 cut(s) | 25, 67, 304 |
| TaiI | ACGT | 1 cut(s) | 297 |
| TaqI | TCGA | 5 cut(s) | 43, 279, 453, 609, 688 |
| TaqII | GACCGA | 2 cut(s) | 227, 830 |
| TasI | AATT | 3 cut(s) | 176, 512, 876 |
| TatI | WGTACW | 1 cut(s) | 405 |
| TfiI | GAWTC | 6 cut(s) | 30, 85, 261, 274, 395, 685 |
| Tru1I | TTAA | 3 cut(s) | 69, 498, 506 |
| Tru9I | TTAA | 3 cut(s) | 69, 498, 506 |
| TscAI | CASTG | 2 cut(s) | 622, 889 |
| TseFI | GTSAC | 2 cut(s) | 613, 880 |
| TseI | GCWGC | 1 cut(s) | 338 |
| Tsp45I | GTSAC | 2 cut(s) | 613, 880 |
| TspDTI | ATGAA | 4 cut(s) | 431, 435, 629, 674 |
| TspGWI | ACGGA | 2 cut(s) | 172, 273 |
| TspRI | CASTG | 2 cut(s) | 622, 889 |
| XbaI | TCTAGA | 1 cut(s) | 952 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 262 |
| XhoI | CTCGAG | 1 cut(s) | 278 |
| XmnI | GAANNNNTTC | 1 cut(s) | 489 |
| XspI | CTAG | 3 cut(s) | 285, 381, 953 |