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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 539 |
| AccB1I | GGYRCC | 3 cut(s) | 494, 650, 743 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 703 |
| AccIII | TCCGGA | 1 cut(s) | 459 |
| AciI | CCGC | 4 cut(s) | 79, 361, 571, 747 |
| AclWI | GGATC | 1 cut(s) | 431 |
| AcoI | YGGCCR | 1 cut(s) | 637 |
| AcsI | RAATTY | 2 cut(s) | 102, 428 |
| AcyI | GRCGYC | 3 cut(s) | 495, 651, 807 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 703, 769 |
| AgsI | TTSAA | 4 cut(s) | 376, 416, 688, 861 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 288, 320 |
| AluBI | AGCT | 4 cut(s) | 155, 161, 692, 766 |
| AluI | AGCT | 4 cut(s) | 155, 161, 692, 766 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AlwI | GGATC | 1 cut(s) | 431 |
| Aor13HI | TCCGGA | 1 cut(s) | 459 |
| AoxI | GGCC | 3 cut(s) | 93, 637, 882 |
| ApeKI | GCWGC | 1 cut(s) | 839 |
| ApoI | RAATTY | 2 cut(s) | 102, 428 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 3 cut(s) | 497, 653, 779 |
| AspS9I | GGNCC | 2 cut(s) | 541, 883 |
| AsuHPI | GGTGA | 1 cut(s) | 830 |
| AvaII | GGWCC | 1 cut(s) | 541 |
| BalI | TGGCCA | 1 cut(s) | 639 |
| BanI | GGYRCC | 3 cut(s) | 494, 650, 743 |
| BanII | GRGCYC | 1 cut(s) | 829 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BbvI | GCAGC | 1 cut(s) | 826 |
| BccI | CCATC | 8 cut(s) | 92, 215, 342, 678, 788, 797, 815, 819 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BfoI | RGCGCY | 2 cut(s) | 498, 654 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BglII | AGATCT | 1 cut(s) | 721 |
| BisI | GCNGC | 1 cut(s) | 840 |
| BlsI | GCNGC | 1 cut(s) | 841 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 541 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 2 cut(s) | 541, 883 |
| BmiI | GGNNCC | 5 cut(s) | 496, 593, 652, 745, 826 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 2 cut(s) | 94, 826 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 2 cut(s) | 767, 879 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 104, 141 |
| BsaHI | GRCGYC | 3 cut(s) | 495, 651, 807 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 440 |
| BsaWI | WCCGGW | 1 cut(s) | 459 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 703, 769 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseAI | TCCGGA | 1 cut(s) | 459 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseDI | CCNNGG | 1 cut(s) | 440 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 808 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 703, 769 |
| BseMII | CTCAG | 2 cut(s) | 702, 893 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseXI | GCAGC | 1 cut(s) | 826 |
| BshFI | GGCC | 3 cut(s) | 95, 639, 884 |
| BshNI | GGYRCC | 3 cut(s) | 494, 650, 743 |
| BsiSI | CCGG | 1 cut(s) | 460 |
| BslFI | GGGAC | 1 cut(s) | 767 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 703, 769 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsmFI | GGGAC | 1 cut(s) | 767 |
| BsmI | GAATGC | 1 cut(s) | 411 |
| BsnI | GGCC | 3 cut(s) | 95, 639, 884 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| Bsp1286I | GDGCHC | 1 cut(s) | 829 |
| Bsp13I | TCCGGA | 1 cut(s) | 459 |
| Bsp143I | GATC | 2 cut(s) | 436, 721 |
| Bsp19I | CCATGG | 1 cut(s) | 440 |
| BspACI | CCGC | 4 cut(s) | 79, 361, 571, 747 |
| BspANI | GGCC | 3 cut(s) | 95, 639, 884 |
| BspCNI | CTCAG | 2 cut(s) | 703, 892 |
| BspEI | TCCGGA | 1 cut(s) | 459 |
| BspLI | GGNNCC | 5 cut(s) | 496, 593, 652, 745, 826 |
| BspPI | GGATC | 1 cut(s) | 431 |
| BspT107I | GGYRCC | 3 cut(s) | 494, 650, 743 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 1 cut(s) | 440 |
| BssMI | GATC | 2 cut(s) | 436, 721 |
| BssNI | GRCGYC | 3 cut(s) | 495, 651, 807 |
| BssT1I | CCWWGG | 1 cut(s) | 440 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 592 |
| BstACI | GRCGYC | 3 cut(s) | 495, 651, 807 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 649 |
| BstDEI | CTNAG | 9 cut(s) | 184, 337, 485, 517, 663, 711, 767, 830, 879 |
| BstDSI | CCRYGG | 1 cut(s) | 440 |
| BstEII | GGTNACC | 1 cut(s) | 566 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 808 |
| BstH2I | RGCGCY | 2 cut(s) | 498, 654 |
| BstHHI | GCGC | 3 cut(s) | 497, 653, 779 |
| BstKTI | GATC | 2 cut(s) | 439, 724 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 2 cut(s) | 436, 721 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 188, 197, 689, 804 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstPI | GGTNACC | 1 cut(s) | 566 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 826 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BstX2I | RGATCY | 1 cut(s) | 721 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 647 |
| BstYI | RGATCY | 1 cut(s) | 721 |
| BsuRI | GGCC | 3 cut(s) | 95, 639, 884 |
| BtgI | CCRYGG | 1 cut(s) | 440 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 808 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 649 |
| CfoI | GCGC | 3 cut(s) | 497, 653, 779 |
| Cfr13I | GGNCC | 2 cut(s) | 541, 883 |
| CseI | GACGC | 3 cut(s) | 689, 796, 884 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 6 cut(s) | 256, 441, 641, 791, 799, 815 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 9 cut(s) | 184, 337, 485, 517, 663, 711, 767, 830, 879 |
| DinI | GGCGCC | 2 cut(s) | 496, 652 |
| DpnI | GATC | 2 cut(s) | 438, 723 |
| DpnII | GATC | 2 cut(s) | 436, 721 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 539 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 539 |
| EaeI | YGGCCR | 1 cut(s) | 637 |
| Eam1104I | CTCTTC | 1 cut(s) | 592 |
| EarI | CTCTTC | 1 cut(s) | 592 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 1 cut(s) | 440 |
| Eco24I | GRGCYC | 1 cut(s) | 829 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 541 |
| Eco91I | GGTNACC | 1 cut(s) | 566 |
| EcoO65I | GGTNACC | 1 cut(s) | 566 |
| EcoRI | GAATTC | 2 cut(s) | 102, 428 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 1 cut(s) | 440 |
| EcoT38I | GRGCYC | 1 cut(s) | 829 |
| EgeI | GGCGCC | 2 cut(s) | 496, 652 |
| EheI | GGCGCC | 2 cut(s) | 496, 652 |
| ErhI | CCWWGG | 1 cut(s) | 440 |
| FaeI | CATG | 6 cut(s) | 259, 444, 644, 794, 802, 818 |
| FaqI | GGGAC | 1 cut(s) | 767 |
| FatI | CATG | 6 cut(s) | 255, 440, 640, 790, 798, 814 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 1 cut(s) | 840 |
| FokI | GGATG | 3 cut(s) | 197, 245, 815 |
| FriOI | GRGCYC | 1 cut(s) | 829 |
| Fsp4HI | GCNGC | 1 cut(s) | 840 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GlaI | GCGC | 3 cut(s) | 496, 652, 778 |
| GluI | GCNGC | 1 cut(s) | 840 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeII | RGCGCY | 2 cut(s) | 498, 654 |
| HaeIII | GGCC | 3 cut(s) | 95, 639, 884 |
| HapII | CCGG | 1 cut(s) | 460 |
| HgaI | GACGC | 3 cut(s) | 689, 796, 884 |
| HhaI | GCGC | 3 cut(s) | 497, 653, 779 |
| Hin1I | GRCGYC | 3 cut(s) | 495, 651, 807 |
| Hin1II | CATG | 6 cut(s) | 259, 444, 644, 794, 802, 818 |
| Hin6I | GCGC | 3 cut(s) | 495, 651, 777 |
| HinP1I | GCGC | 3 cut(s) | 495, 651, 777 |
| HincII | GTYRAC | 1 cut(s) | 605 |
| HindII | GTYRAC | 1 cut(s) | 605 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 7 cut(s) | 67, 115, 220, 236, 320, 463, 707 |
| HpaII | CCGG | 1 cut(s) | 460 |
| HphI | GGTGA | 1 cut(s) | 830 |
| Hpy166II | GTNNAC | 2 cut(s) | 605, 757 |
| Hpy188I | TCNGA | 4 cut(s) | 108, 400, 712, 874 |
| Hpy188III | TCNNGA | 7 cut(s) | 51, 71, 332, 386, 460, 530, 732 |
| Hpy8I | GTNNAC | 2 cut(s) | 605, 757 |
| HpyAV | CCTTC | 1 cut(s) | 270 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 312, 534, 607 |
| HpyCH4V | TGCA | 2 cut(s) | 255, 842 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 188, 197, 689, 804 |
| HpyF3I | CTNAG | 9 cut(s) | 184, 337, 485, 517, 663, 711, 767, 830, 879 |
| HpySE526I | ACGT | 4 cut(s) | 135, 312, 534, 607 |
| Hsp92I | GRCGYC | 3 cut(s) | 495, 651, 807 |
| Hsp92II | CATG | 6 cut(s) | 259, 444, 644, 794, 802, 818 |
| HspAI | GCGC | 3 cut(s) | 495, 651, 777 |
| KasI | GGCGCC | 2 cut(s) | 494, 650 |
| Kpn2I | TCCGGA | 1 cut(s) | 459 |
| Kzo9I | GATC | 2 cut(s) | 436, 721 |
| LmnI | GCTCC | 3 cut(s) | 246, 697, 824 |
| Lsp1109I | GCAGC | 1 cut(s) | 826 |
| LweI | GCATC | 2 cut(s) | 94, 826 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeII | ACGT | 4 cut(s) | 135, 312, 534, 607 |
| MaeIII | GTNAC | 3 cut(s) | 5, 317, 566 |
| MalI | GATC | 2 cut(s) | 438, 723 |
| MboI | GATC | 2 cut(s) | 436, 721 |
| MboII | GAAGA | 4 cut(s) | 275, 278, 308, 609 |
| MfeI | CAATTG | 1 cut(s) | 32 |
| MflI | RGATCY | 1 cut(s) | 721 |
| MhlI | GDGCHC | 1 cut(s) | 829 |
| MlsI | TGGCCA | 1 cut(s) | 639 |
| MluCI | AATT | 6 cut(s) | 17, 32, 102, 428, 468, 549 |
| MluNI | TGGCCA | 1 cut(s) | 639 |
| Mly113I | GGCGCC | 2 cut(s) | 495, 651 |
| MlyI | GAGTC | 3 cut(s) | 214, 314, 716 |
| Mox20I | TGGCCA | 1 cut(s) | 639 |
| MroI | TCCGGA | 1 cut(s) | 459 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MscI | TGGCCA | 1 cut(s) | 639 |
| MseI | TTAA | 1 cut(s) | 422 |
| MslI | CAYNNNNRTG | 5 cut(s) | 215, 231, 675, 816, 819 |
| Msp20I | TGGCCA | 1 cut(s) | 639 |
| MspI | CCGG | 1 cut(s) | 460 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MunI | CAATTG | 1 cut(s) | 32 |
| Mva1269I | GAATGC | 1 cut(s) | 411 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 188, 197, 689, 804 |
| NarI | GGCGCC | 2 cut(s) | 495, 651 |
| NcoI | CCATGG | 1 cut(s) | 440 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 2 cut(s) | 436, 721 |
| NlaIII | CATG | 6 cut(s) | 259, 444, 644, 794, 802, 818 |
| NlaIV | GGNNCC | 5 cut(s) | 496, 593, 652, 745, 826 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PctI | GAATGC | 1 cut(s) | 411 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 4 cut(s) | 67, 115, 236, 463 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 703 |
| PkrI | GCNGC | 1 cut(s) | 841 |
| PleI | GAGTC | 3 cut(s) | 214, 314, 715 |
| PluTI | GGCGCC | 2 cut(s) | 498, 654 |
| PpsI | GAGTC | 3 cut(s) | 214, 314, 715 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 566 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 5 cut(s) | 496, 593, 652, 745, 826 |
| PspPI | GGNCC | 2 cut(s) | 541, 883 |
| PsuI | RGATCY | 1 cut(s) | 721 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 5 cut(s) | 215, 231, 675, 816, 819 |
| SaqAI | TTAA | 1 cut(s) | 422 |
| SatI | GCNGC | 1 cut(s) | 840 |
| Sau3AI | GATC | 2 cut(s) | 436, 721 |
| Sau96I | GGNCC | 2 cut(s) | 541, 883 |
| SchI | GAGTC | 3 cut(s) | 214, 314, 716 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 829 |
| SfaNI | GCATC | 2 cut(s) | 94, 826 |
| SfoI | GGCGCC | 2 cut(s) | 496, 652 |
| SinI | GGWCC | 1 cut(s) | 541 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 215, 231, 675, 816, 819 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 6 cut(s) | 17, 32, 102, 428, 468, 549 |
| SsiI | CCGC | 4 cut(s) | 79, 361, 571, 747 |
| SspDI | GGCGCC | 2 cut(s) | 494, 650 |
| SspMI | CTAG | 1 cut(s) | 126 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 1 cut(s) | 440 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 4 cut(s) | 138, 315, 537, 610 |
| TaqI | TCGA | 2 cut(s) | 294, 733 |
| TasI | AATT | 6 cut(s) | 17, 32, 102, 428, 468, 549 |
| TfiI | GAWTC | 4 cut(s) | 67, 115, 236, 463 |
| Tru1I | TTAA | 1 cut(s) | 422 |
| Tru9I | TTAA | 1 cut(s) | 422 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 839 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 2 cut(s) | 272, 276 |
| TspGWI | ACGGA | 2 cut(s) | 305, 604 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 703 |
| VpaK11BI | GGWCC | 1 cut(s) | 541 |
| XapI | RAATTY | 2 cut(s) | 102, 428 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 770, 818 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 1 cut(s) | 126 |