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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 429 |
| AccII | CGCG | 1 cut(s) | 414 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AclWI | GGATC | 2 cut(s) | 296, 366 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcuI | CTGAAG | 1 cut(s) | 165 |
| AflII | CTTAAG | 1 cut(s) | 452 |
| AgsI | TTSAA | 1 cut(s) | 121 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 2 cut(s) | 307, 317 |
| AluI | AGCT | 2 cut(s) | 307, 317 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AlwI | GGATC | 2 cut(s) | 296, 366 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 1 cut(s) | 416 |
| AsuHPI | GGTGA | 1 cut(s) | 74 |
| BanI | GGYRCC | 1 cut(s) | 429 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| BccI | CCATC | 2 cut(s) | 87, 241 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 1 cut(s) | 83 |
| BfrI | CTTAAG | 1 cut(s) | 452 |
| BmiI | GGNNCC | 1 cut(s) | 431 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 428, 460 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 1 cut(s) | 345 |
| Bsh1236I | CGCG | 1 cut(s) | 414 |
| BshNI | GGYRCC | 1 cut(s) | 429 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 3 cut(s) | 189, 288, 371 |
| Bsp19I | CCATGG | 1 cut(s) | 375 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspFNI | CGCG | 1 cut(s) | 414 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 1 cut(s) | 431 |
| BspPI | GGATC | 2 cut(s) | 296, 366 |
| BspT107I | GGYRCC | 1 cut(s) | 429 |
| BspTI | CTTAAG | 1 cut(s) | 452 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 3 cut(s) | 189, 288, 371 |
| BssT1I | CCWWGG | 1 cut(s) | 375 |
| BstAFI | CTTAAG | 1 cut(s) | 452 |
| BstDEI | CTNAG | 2 cut(s) | 255, 420 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstFNI | CGCG | 1 cut(s) | 414 |
| BstHHI | GCGC | 1 cut(s) | 416 |
| BstKTI | GATC | 3 cut(s) | 192, 291, 374 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 3 cut(s) | 189, 288, 371 |
| BstUI | CGCG | 1 cut(s) | 414 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 1 cut(s) | 416 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CviAII | CATG | 3 cut(s) | 302, 338, 376 |
| CviJI | RGCY | 4 cut(s) | 25, 103, 307, 317 |
| CviKI_1 | RGCY | 4 cut(s) | 25, 103, 307, 317 |
| DdeI | CTNAG | 2 cut(s) | 255, 420 |
| DpnI | GATC | 3 cut(s) | 191, 290, 373 |
| DpnII | GATC | 3 cut(s) | 189, 288, 371 |
| Eco130I | CCWWGG | 1 cut(s) | 375 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco57I | CTGAAG | 1 cut(s) | 165 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoT14I | CCWWGG | 1 cut(s) | 375 |
| ErhI | CCWWGG | 1 cut(s) | 375 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 3 cut(s) | 305, 341, 379 |
| FaiI | YATR | 8 cut(s) | 99, 303, 320, 339, 377, 390, 408, 461 |
| FatI | CATG | 3 cut(s) | 301, 337, 375 |
| FokI | GGATG | 1 cut(s) | 332 |
| FspBI | CTAG | 1 cut(s) | 83 |
| GlaI | GCGC | 1 cut(s) | 415 |
| HapII | CCGG | 1 cut(s) | 395 |
| HhaI | GCGC | 1 cut(s) | 416 |
| Hin1II | CATG | 3 cut(s) | 305, 341, 379 |
| Hin6I | GCGC | 1 cut(s) | 414 |
| HinP1I | GCGC | 1 cut(s) | 414 |
| HinfI | GANTC | 4 cut(s) | 65, 217, 267, 398 |
| HpaII | CCGG | 1 cut(s) | 395 |
| HphI | GGTGA | 1 cut(s) | 74 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 131, 302, 369, 395 |
| Hpy99I | CGWCG | 1 cut(s) | 62 |
| HpyAV | CCTTC | 2 cut(s) | 15, 238 |
| HpyCH4IV | ACGT | 1 cut(s) | 57 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 281 |
| HpyF3I | CTNAG | 2 cut(s) | 255, 420 |
| HpySE526I | ACGT | 1 cut(s) | 57 |
| Hsp92II | CATG | 3 cut(s) | 305, 341, 379 |
| HspAI | GCGC | 1 cut(s) | 414 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Kzo9I | GATC | 3 cut(s) | 189, 288, 371 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| LpnPI | CCDG | 4 cut(s) | 31, 90, 267, 408 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 1 cut(s) | 83 |
| MaeII | ACGT | 1 cut(s) | 57 |
| MaeIII | GTNAC | 1 cut(s) | 62 |
| MalI | GATC | 3 cut(s) | 191, 290, 373 |
| MboI | GATC | 3 cut(s) | 189, 288, 371 |
| MboII | GAAGA | 5 cut(s) | 20, 23, 53, 226, 367 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MluCI | AATT | 3 cut(s) | 173, 364, 403 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MnlI | CCTC | 2 cut(s) | 419, 427 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MseI | TTAA | 3 cut(s) | 159, 167, 453 |
| MslI | CAYNNNNRTG | 1 cut(s) | 350 |
| MspCI | CTTAAG | 1 cut(s) | 452 |
| MspI | CCGG | 1 cut(s) | 395 |
| MvnI | CGCG | 1 cut(s) | 414 |
| NcoI | CCATGG | 1 cut(s) | 375 |
| NdeII | GATC | 3 cut(s) | 189, 288, 371 |
| NlaIII | CATG | 3 cut(s) | 305, 341, 379 |
| NlaIV | GGNNCC | 1 cut(s) | 431 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 2 cut(s) | 267, 398 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| PspN4I | GGNNCC | 1 cut(s) | 431 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 1 cut(s) | 350 |
| SaqAI | TTAA | 3 cut(s) | 159, 167, 453 |
| Sau3AI | GATC | 3 cut(s) | 189, 288, 371 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| SetI | ASST | 6 cut(s) | 60, 84, 230, 299, 309, 319 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 350 |
| SmlI | CTYRAG | 1 cut(s) | 452 |
| SmoI | CTYRAG | 1 cut(s) | 452 |
| Sse9I | AATT | 3 cut(s) | 173, 364, 403 |
| SspMI | CTAG | 1 cut(s) | 83 |
| StyI | CCWWGG | 1 cut(s) | 375 |
| TaiI | ACGT | 1 cut(s) | 60 |
| TaqI | TCGA | 4 cut(s) | 39, 265, 270, 368 |
| TasI | AATT | 3 cut(s) | 173, 364, 403 |
| TfiI | GAWTC | 2 cut(s) | 267, 398 |
| Tru1I | TTAA | 3 cut(s) | 159, 167, 453 |
| Tru9I | TTAA | 3 cut(s) | 159, 167, 453 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 4 cut(s) | 17, 21, 290, 335 |
| TspGWI | ACGGA | 1 cut(s) | 301 |
| Vha464I | CTTAAG | 1 cut(s) | 452 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 1 cut(s) | 83 |