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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 438 |
| AccB1I | GGYRCC | 1 cut(s) | 393 |
| AccII | CGCG | 1 cut(s) | 378 |
| AclWI | GGATC | 2 cut(s) | 260, 330 |
| AcsI | RAATTY | 1 cut(s) | 137 |
| AcyI | GRCGYC | 1 cut(s) | 394 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AgsI | TTSAA | 1 cut(s) | 85 |
| AluBI | AGCT | 3 cut(s) | 72, 271, 281 |
| AluI | AGCT | 3 cut(s) | 72, 271, 281 |
| Alw21I | GWGCWC | 1 cut(s) | 354 |
| Alw26I | GTCTC | 1 cut(s) | 205 |
| AlwI | GGATC | 2 cut(s) | 260, 330 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 75 |
| ApoI | RAATTY | 1 cut(s) | 137 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 114 |
| AspLEI | GCGC | 2 cut(s) | 380, 396 |
| AspS9I | GGNCC | 1 cut(s) | 440 |
| AvaII | GGWCC | 1 cut(s) | 440 |
| BanI | GGYRCC | 1 cut(s) | 393 |
| BbsI | GAAGAC | 2 cut(s) | 57, 185 |
| Bbv12I | GWGCWC | 1 cut(s) | 354 |
| BbvCI | CCTCAGC | 1 cut(s) | 68 |
| BccI | CCATC | 1 cut(s) | 205 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 224, 258 |
| BciVI | GTATCC | 1 cut(s) | 415 |
| BcoDI | GTCTC | 1 cut(s) | 205 |
| BfmI | CTRYAG | 1 cut(s) | 243 |
| BfoI | RGCGCY | 1 cut(s) | 397 |
| BfuI | GTATCC | 1 cut(s) | 415 |
| Bme18I | GGWCC | 1 cut(s) | 440 |
| BmgT120I | GGNCC | 1 cut(s) | 440 |
| BmiI | GGNNCC | 2 cut(s) | 65, 395 |
| BmsI | GCATC | 1 cut(s) | 151 |
| BpiI | GAAGAC | 2 cut(s) | 57, 185 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| Bpu10I | CCTNAGC | 1 cut(s) | 68 |
| Bsa29I | ATCGAT | 1 cut(s) | 234 |
| BsaHI | GRCGYC | 1 cut(s) | 394 |
| BsaJI | CCNNGG | 2 cut(s) | 142, 339 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| BseCI | ATCGAT | 1 cut(s) | 234 |
| BseDI | CCNNGG | 2 cut(s) | 142, 339 |
| BseGI | GGATG | 2 cut(s) | 22, 309 |
| BseMII | CTCAG | 2 cut(s) | 82, 216 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseRI | GAGGAG | 1 cut(s) | 56 |
| Bsh1236I | CGCG | 1 cut(s) | 378 |
| BshNI | GGYRCC | 1 cut(s) | 393 |
| BshVI | ATCGAT | 1 cut(s) | 234 |
| BsiHKAI | GWGCWC | 1 cut(s) | 354 |
| BsmAI | GTCTC | 1 cut(s) | 205 |
| BsmBI | CGTCTC | 1 cut(s) | 205 |
| Bsp1286I | GDGCHC | 1 cut(s) | 354 |
| Bsp143I | GATC | 3 cut(s) | 153, 252, 335 |
| Bsp19I | CCATGG | 1 cut(s) | 339 |
| BspCNI | CTCAG | 2 cut(s) | 81, 215 |
| BspDI | ATCGAT | 1 cut(s) | 234 |
| BspFNI | CGCG | 1 cut(s) | 378 |
| BspHI | TCATGA | 1 cut(s) | 265 |
| BspLI | GGNNCC | 2 cut(s) | 65, 395 |
| BspMAI | CTGCAG | 1 cut(s) | 247 |
| BspPI | GGATC | 2 cut(s) | 260, 330 |
| BspT107I | GGYRCC | 1 cut(s) | 393 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssECI | CCNNGG | 2 cut(s) | 142, 339 |
| BssMI | GATC | 3 cut(s) | 153, 252, 335 |
| BssNI | GRCGYC | 1 cut(s) | 394 |
| BssT1I | CCWWGG | 1 cut(s) | 339 |
| BstACI | GRCGYC | 1 cut(s) | 394 |
| BstDEI | CTNAG | 5 cut(s) | 68, 202, 219, 384, 416 |
| BstDSI | CCRYGG | 2 cut(s) | 142, 339 |
| BstF5I | GGATG | 2 cut(s) | 22, 309 |
| BstFNI | CGCG | 1 cut(s) | 378 |
| BstH2I | RGCGCY | 1 cut(s) | 397 |
| BstHHI | GCGC | 2 cut(s) | 380, 396 |
| BstKTI | GATC | 3 cut(s) | 156, 255, 338 |
| BstMAI | GTCTC | 1 cut(s) | 205 |
| BstMBI | GATC | 3 cut(s) | 153, 252, 335 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 400 |
| BstSFI | CTRYAG | 1 cut(s) | 243 |
| BstUI | CGCG | 1 cut(s) | 378 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 185 |
| BstX2I | RGATCY | 1 cut(s) | 335 |
| BstYI | RGATCY | 1 cut(s) | 335 |
| Bsu15I | ATCGAT | 1 cut(s) | 234 |
| BsuI | GTATCC | 1 cut(s) | 415 |
| BsuTUI | ATCGAT | 1 cut(s) | 234 |
| BtgI | CCRYGG | 2 cut(s) | 142, 339 |
| BtgZI | GCGATG | 1 cut(s) | 179 |
| BtsCI | GGATG | 2 cut(s) | 22, 309 |
| CaiI | CAGNNNCTG | 1 cut(s) | 75 |
| CciI | TCATGA | 1 cut(s) | 265 |
| CfoI | GCGC | 2 cut(s) | 380, 396 |
| Cfr13I | GGNCC | 1 cut(s) | 440 |
| ClaI | ATCGAT | 1 cut(s) | 234 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 3 cut(s) | 266, 302, 340 |
| CviJI | RGCY | 5 cut(s) | 64, 72, 271, 281, 474 |
| CviKI_1 | RGCY | 5 cut(s) | 64, 72, 271, 281, 474 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 5 cut(s) | 68, 202, 219, 384, 416 |
| DinI | GGCGCC | 1 cut(s) | 395 |
| DpnI | GATC | 3 cut(s) | 155, 254, 337 |
| DpnII | GATC | 3 cut(s) | 153, 252, 335 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 438 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 438 |
| Eco130I | CCWWGG | 1 cut(s) | 339 |
| Eco47I | GGWCC | 1 cut(s) | 440 |
| EcoRI | GAATTC | 1 cut(s) | 137 |
| EcoT14I | CCWWGG | 1 cut(s) | 339 |
| EgeI | GGCGCC | 1 cut(s) | 395 |
| EheI | GGCGCC | 1 cut(s) | 395 |
| ErhI | CCWWGG | 1 cut(s) | 339 |
| Esp3I | CGTCTC | 1 cut(s) | 205 |
| FaeI | CATG | 3 cut(s) | 269, 305, 343 |
| FatI | CATG | 3 cut(s) | 265, 301, 339 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 2 cut(s) | 29, 296 |
| GlaI | GCGC | 2 cut(s) | 379, 395 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HaeII | RGCGCY | 1 cut(s) | 397 |
| HhaI | GCGC | 2 cut(s) | 380, 396 |
| Hin1I | GRCGYC | 1 cut(s) | 394 |
| Hin1II | CATG | 3 cut(s) | 269, 305, 343 |
| Hin6I | GCGC | 2 cut(s) | 378, 394 |
| HinP1I | GCGC | 2 cut(s) | 378, 394 |
| HinfI | GANTC | 5 cut(s) | 4, 20, 181, 231, 362 |
| Hpy188I | TCNGA | 2 cut(s) | 109, 158 |
| Hpy188III | TCNNGA | 5 cut(s) | 95, 266, 333, 359, 429 |
| HpyAV | CCTTC | 2 cut(s) | 202, 458 |
| HpyCH4IV | ACGT | 1 cut(s) | 433 |
| HpyCH4V | TGCA | 1 cut(s) | 245 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 400 |
| HpyF3I | CTNAG | 5 cut(s) | 68, 202, 219, 384, 416 |
| HpySE526I | ACGT | 1 cut(s) | 433 |
| Hsp92I | GRCGYC | 1 cut(s) | 394 |
| Hsp92II | CATG | 3 cut(s) | 269, 305, 343 |
| HspAI | GCGC | 2 cut(s) | 378, 394 |
| KasI | GGCGCC | 1 cut(s) | 393 |
| Kzo9I | GATC | 3 cut(s) | 153, 252, 335 |
| LmnI | GCTCC | 3 cut(s) | 30, 69, 278 |
| LpnPI | CCDG | 5 cut(s) | 41, 231, 344, 414, 423 |
| LweI | GCATC | 1 cut(s) | 151 |
| MaeII | ACGT | 1 cut(s) | 433 |
| MaeIII | GTNAC | 2 cut(s) | 238, 467 |
| MalI | GATC | 3 cut(s) | 155, 254, 337 |
| MboI | GATC | 3 cut(s) | 153, 252, 335 |
| MboII | GAAGA | 4 cut(s) | 59, 62, 190, 331 |
| MflI | RGATCY | 1 cut(s) | 335 |
| MhlI | GDGCHC | 1 cut(s) | 354 |
| MluCI | AATT | 3 cut(s) | 137, 328, 367 |
| Mly113I | GGCGCC | 1 cut(s) | 394 |
| MlyI | GAGTC | 1 cut(s) | 175 |
| MnlI | CCTC | 3 cut(s) | 77, 383, 391 |
| MroXI | GAANNNNTTC | 1 cut(s) | 114 |
| MseI | TTAA | 2 cut(s) | 123, 131 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 314 |
| MvnI | CGCG | 1 cut(s) | 378 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 400 |
| NarI | GGCGCC | 1 cut(s) | 394 |
| NcoI | CCATGG | 1 cut(s) | 339 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 3 cut(s) | 153, 252, 335 |
| NlaIII | CATG | 3 cut(s) | 269, 305, 343 |
| NlaIV | GGNNCC | 2 cut(s) | 65, 395 |
| PagI | TCATGA | 1 cut(s) | 265 |
| PdmI | GAANNNNTTC | 1 cut(s) | 114 |
| PfeI | GAWTC | 3 cut(s) | 20, 231, 362 |
| PleI | GAGTC | 1 cut(s) | 175 |
| PluTI | GGCGCC | 1 cut(s) | 397 |
| PpsI | GAGTC | 1 cut(s) | 175 |
| PspN4I | GGNNCC | 2 cut(s) | 65, 395 |
| PspPI | GGNCC | 1 cut(s) | 440 |
| PstI | CTGCAG | 1 cut(s) | 247 |
| PstNI | CAGNNNCTG | 1 cut(s) | 75 |
| PsuI | RGATCY | 1 cut(s) | 335 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 314 |
| SaqAI | TTAA | 2 cut(s) | 123, 131 |
| Sau3AI | GATC | 3 cut(s) | 153, 252, 335 |
| Sau96I | GGNCC | 1 cut(s) | 440 |
| SchI | GAGTC | 1 cut(s) | 175 |
| SduI | GDGCHC | 1 cut(s) | 354 |
| SetI | ASST | 7 cut(s) | 74, 194, 263, 273, 283, 436, 469 |
| SfaNI | GCATC | 1 cut(s) | 151 |
| SfcI | CTRYAG | 1 cut(s) | 243 |
| SfoI | GGCGCC | 1 cut(s) | 395 |
| SinI | GGWCC | 1 cut(s) | 440 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 314 |
| Sse9I | AATT | 3 cut(s) | 137, 328, 367 |
| SspDI | GGCGCC | 1 cut(s) | 393 |
| StyI | CCWWGG | 1 cut(s) | 339 |
| TaiI | ACGT | 1 cut(s) | 436 |
| TaqI | TCGA | 3 cut(s) | 229, 234, 332 |
| TasI | AATT | 3 cut(s) | 137, 328, 367 |
| TatI | WGTACW | 1 cut(s) | 30 |
| TfiI | GAWTC | 3 cut(s) | 20, 231, 362 |
| Tru1I | TTAA | 2 cut(s) | 123, 131 |
| Tru9I | TTAA | 2 cut(s) | 123, 131 |
| TspDTI | ATGAA | 4 cut(s) | 56, 60, 254, 299 |
| TspGWI | ACGGA | 2 cut(s) | 131, 265 |
| VpaK11BI | GGWCC | 1 cut(s) | 440 |
| XapI | RAATTY | 1 cut(s) | 137 |
| XmnI | GAANNNNTTC | 1 cut(s) | 114 |