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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 59 |
| Acc36I | ACCTGC | 3 cut(s) | 22, 59, 108 |
| AccB1I | GGYRCC | 1 cut(s) | 490 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 78 |
| AciI | CCGC | 1 cut(s) | 632 |
| AclWI | GGATC | 1 cut(s) | 83 |
| AcoI | YGGCCR | 3 cut(s) | 69, 80, 477 |
| AcsI | RAATTY | 1 cut(s) | 269 |
| AcyI | GRCGYC | 1 cut(s) | 491 |
| AdeI | CACNNNGTG | 1 cut(s) | 672 |
| AfaI | GTAC | 1 cut(s) | 501 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 78, 593 |
| AgeI | ACCGGT | 1 cut(s) | 496 |
| AgsI | TTSAA | 2 cut(s) | 217, 528 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 129, 161 |
| AluBI | AGCT | 4 cut(s) | 204, 403, 613, 664 |
| AluI | AGCT | 4 cut(s) | 204, 403, 613, 664 |
| Alw21I | GWGCWC | 3 cut(s) | 405, 557, 615 |
| Alw26I | GTCTC | 1 cut(s) | 133 |
| AlwI | GGATC | 1 cut(s) | 83 |
| AoxI | GGCC | 3 cut(s) | 69, 80, 477 |
| ApoI | RAATTY | 1 cut(s) | 269 |
| AsiGI | ACCGGT | 1 cut(s) | 496 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 246 |
| AspLEI | GCGC | 1 cut(s) | 493 |
| BaeGI | GKGCMC | 1 cut(s) | 600 |
| BalI | TGGCCA | 2 cut(s) | 82, 479 |
| BanI | GGYRCC | 1 cut(s) | 490 |
| BanII | GRGCYC | 2 cut(s) | 405, 615 |
| BauI | CACGAG | 1 cut(s) | 614 |
| BbsI | GAAGAC | 1 cut(s) | 114 |
| Bbv12I | GWGCWC | 3 cut(s) | 405, 557, 615 |
| BccI | CCATC | 2 cut(s) | 183, 337 |
| BcoDI | GTCTC | 1 cut(s) | 133 |
| BfaI | CTAG | 2 cut(s) | 179, 390 |
| BfmI | CTRYAG | 1 cut(s) | 375 |
| BfoI | RGCGCY | 1 cut(s) | 494 |
| BfuAI | ACCTGC | 3 cut(s) | 22, 59, 108 |
| BmiI | GGNNCC | 1 cut(s) | 492 |
| BmsI | GCATC | 2 cut(s) | 283, 510 |
| BpiI | GAAGAC | 1 cut(s) | 114 |
| Bsa29I | ATCGAT | 1 cut(s) | 366 |
| BsaBI | GATNNNNATC | 1 cut(s) | 93 |
| BsaHI | GRCGYC | 1 cut(s) | 491 |
| BsaI | GGTCTC | 1 cut(s) | 133 |
| BsaWI | WCCGGW | 2 cut(s) | 496, 586 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 78, 593 |
| Bse118I | RCCGGY | 1 cut(s) | 496 |
| Bse3DI | GCAATG | 2 cut(s) | 303, 474 |
| Bse8I | GATNNNNATC | 1 cut(s) | 93 |
| BseCI | ATCGAT | 1 cut(s) | 366 |
| BseGI | GGATG | 1 cut(s) | 583 |
| BseJI | GATNNNNATC | 1 cut(s) | 93 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 78, 593 |
| BseMI | GCAATG | 2 cut(s) | 303, 474 |
| BseMII | CTCAG | 2 cut(s) | 342, 542 |
| BseSI | GKGCMC | 1 cut(s) | 600 |
| BseYI | CCCAGC | 1 cut(s) | 113 |
| BshFI | GGCC | 3 cut(s) | 71, 82, 479 |
| BshNI | GGYRCC | 1 cut(s) | 490 |
| BshTI | ACCGGT | 1 cut(s) | 496 |
| BshVI | ATCGAT | 1 cut(s) | 366 |
| BsiHKAI | GWGCWC | 3 cut(s) | 405, 557, 615 |
| BsiSI | CCGG | 3 cut(s) | 68, 497, 587 |
| BslFI | GGGAC | 1 cut(s) | 689 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 78, 593 |
| BsmAI | GTCTC | 1 cut(s) | 133 |
| BsmFI | GGGAC | 1 cut(s) | 689 |
| BsnI | GGCC | 3 cut(s) | 71, 82, 479 |
| Bso31I | GGTCTC | 1 cut(s) | 133 |
| Bsp1286I | GDGCHC | 4 cut(s) | 405, 557, 600, 615 |
| Bsp143I | GATC | 3 cut(s) | 88, 384, 696 |
| BspACI | CCGC | 1 cut(s) | 632 |
| BspANI | GGCC | 3 cut(s) | 71, 82, 479 |
| BspCNI | CTCAG | 2 cut(s) | 343, 543 |
| BspDI | ATCGAT | 1 cut(s) | 366 |
| BspLI | GGNNCC | 1 cut(s) | 492 |
| BspMI | ACCTGC | 3 cut(s) | 22, 59, 108 |
| BspPI | GGATC | 1 cut(s) | 83 |
| BspT107I | GGYRCC | 1 cut(s) | 490 |
| BspTNI | GGTCTC | 1 cut(s) | 133 |
| BsrDI | GCAATG | 2 cut(s) | 303, 474 |
| BsrFI | RCCGGY | 1 cut(s) | 496 |
| BssAI | RCCGGY | 1 cut(s) | 496 |
| BssMI | GATC | 3 cut(s) | 88, 384, 696 |
| BssNI | GRCGYC | 1 cut(s) | 491 |
| BssSI | CACGAG | 1 cut(s) | 614 |
| Bst2BI | CACGAG | 1 cut(s) | 614 |
| Bst4CI | ACNGT | 1 cut(s) | 376 |
| BstACI | GRCGYC | 1 cut(s) | 491 |
| BstDEI | CTNAG | 4 cut(s) | 200, 351, 503, 551 |
| BstF5I | GGATG | 1 cut(s) | 583 |
| BstH2I | RGCGCY | 1 cut(s) | 494 |
| BstHHI | GCGC | 1 cut(s) | 493 |
| BstKTI | GATC | 3 cut(s) | 91, 387, 699 |
| BstMAI | GTCTC | 1 cut(s) | 133 |
| BstMBI | GATC | 3 cut(s) | 88, 384, 696 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 529, 661 |
| BstSFI | CTRYAG | 1 cut(s) | 375 |
| BstSLI | GKGCMC | 1 cut(s) | 600 |
| BstV2I | GAAGAC | 1 cut(s) | 114 |
| BstX2I | RGATCY | 1 cut(s) | 88 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 487 |
| BstYI | RGATCY | 1 cut(s) | 88 |
| Bsu15I | ATCGAT | 1 cut(s) | 366 |
| BsuRI | GGCC | 3 cut(s) | 71, 82, 479 |
| BsuTUI | ATCGAT | 1 cut(s) | 366 |
| BtsCI | GGATG | 1 cut(s) | 583 |
| BtsIMutI | CAGTG | 1 cut(s) | 423 |
| BveI | ACCTGC | 3 cut(s) | 22, 59, 108 |
| CfoI | GCGC | 1 cut(s) | 493 |
| Cfr10I | RCCGGY | 1 cut(s) | 496 |
| ClaI | ATCGAT | 1 cut(s) | 366 |
| CseI | GACGC | 1 cut(s) | 661 |
| Csp6I | GTAC | 1 cut(s) | 500 |
| CspAI | ACCGGT | 1 cut(s) | 496 |
| CviAII | CATG | 3 cut(s) | 415, 434, 481 |
| CviQI | GTAC | 1 cut(s) | 500 |
| DdeI | CTNAG | 4 cut(s) | 200, 351, 503, 551 |
| DinI | GGCGCC | 1 cut(s) | 492 |
| DpnI | GATC | 3 cut(s) | 90, 386, 698 |
| DpnII | GATC | 3 cut(s) | 88, 384, 696 |
| DraIII | CACNNNGTG | 1 cut(s) | 672 |
| EaeI | YGGCCR | 3 cut(s) | 69, 80, 477 |
| EciI | GGCGGA | 1 cut(s) | 621 |
| Ecl136II | GAGCTC | 2 cut(s) | 403, 613 |
| Eco24I | GRGCYC | 2 cut(s) | 405, 615 |
| Eco31I | GGTCTC | 1 cut(s) | 133 |
| Eco32I | GATATC | 1 cut(s) | 286 |
| Eco53kI | GAGCTC | 2 cut(s) | 403, 613 |
| EcoICRI | GAGCTC | 2 cut(s) | 403, 613 |
| EcoRI | GAATTC | 1 cut(s) | 269 |
| EcoRV | GATATC | 1 cut(s) | 286 |
| EcoT38I | GRGCYC | 2 cut(s) | 405, 615 |
| EgeI | GGCGCC | 1 cut(s) | 492 |
| EheI | GGCGCC | 1 cut(s) | 492 |
| FaeI | CATG | 3 cut(s) | 418, 437, 484 |
| FaqI | GGGAC | 1 cut(s) | 689 |
| FatI | CATG | 3 cut(s) | 414, 433, 480 |
| FokI | GGATG | 1 cut(s) | 570 |
| FriOI | GRGCYC | 2 cut(s) | 405, 615 |
| FspBI | CTAG | 2 cut(s) | 179, 390 |
| GlaI | GCGC | 1 cut(s) | 492 |
| GsaI | CCCAGC | 1 cut(s) | 117 |
| HaeII | RGCGCY | 1 cut(s) | 494 |
| HaeIII | GGCC | 3 cut(s) | 71, 82, 479 |
| HapII | CCGG | 3 cut(s) | 68, 497, 587 |
| HgaI | GACGC | 1 cut(s) | 661 |
| HhaI | GCGC | 1 cut(s) | 493 |
| Hin1I | GRCGYC | 1 cut(s) | 491 |
| Hin1II | CATG | 3 cut(s) | 418, 437, 484 |
| Hin6I | GCGC | 1 cut(s) | 491 |
| HinP1I | GCGC | 1 cut(s) | 491 |
| HincII | GTYRAC | 1 cut(s) | 445 |
| HindII | GTYRAC | 1 cut(s) | 445 |
| HindIII | AAGCTT | 1 cut(s) | 202 |
| HinfI | GANTC | 2 cut(s) | 161, 547 |
| HpaII | CCGG | 3 cut(s) | 68, 497, 587 |
| Hpy166II | GTNNAC | 1 cut(s) | 445 |
| Hpy188I | TCNGA | 2 cut(s) | 241, 552 |
| Hpy188III | TCNNGA | 3 cut(s) | 173, 217, 572 |
| Hpy8I | GTNNAC | 1 cut(s) | 445 |
| HpyAV | CCTTC | 2 cut(s) | 334, 340 |
| HpyCH4III | ACNGT | 1 cut(s) | 376 |
| HpyCH4IV | ACGT | 3 cut(s) | 153, 441, 447 |
| HpyCH4V | TGCA | 1 cut(s) | 296 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 529, 661 |
| HpyF3I | CTNAG | 4 cut(s) | 200, 351, 503, 551 |
| HpySE526I | ACGT | 3 cut(s) | 153, 441, 447 |
| Hsp92I | GRCGYC | 1 cut(s) | 491 |
| Hsp92II | CATG | 3 cut(s) | 418, 437, 484 |
| HspAI | GCGC | 1 cut(s) | 491 |
| KasI | GGCGCC | 1 cut(s) | 490 |
| Kzo9I | GATC | 3 cut(s) | 88, 384, 696 |
| LweI | GCATC | 2 cut(s) | 283, 510 |
| MaeI | CTAG | 2 cut(s) | 179, 390 |
| MaeII | ACGT | 3 cut(s) | 153, 441, 447 |
| MaeIII | GTNAC | 4 cut(s) | 158, 370, 421, 649 |
| MalI | GATC | 3 cut(s) | 90, 386, 698 |
| MboI | GATC | 3 cut(s) | 88, 384, 696 |
| MboII | GAAGA | 5 cut(s) | 56, 116, 119, 149, 694 |
| MflI | RGATCY | 1 cut(s) | 88 |
| MhlI | GDGCHC | 4 cut(s) | 405, 557, 600, 615 |
| MlsI | TGGCCA | 2 cut(s) | 82, 479 |
| MluCI | AATT | 1 cut(s) | 269 |
| MluNI | TGGCCA | 2 cut(s) | 82, 479 |
| Mly113I | GGCGCC | 1 cut(s) | 491 |
| MlyI | GAGTC | 2 cut(s) | 155, 556 |
| MnlI | CCTC | 5 cut(s) | 86, 457, 483, 545, 639 |
| Mox20I | TGGCCA | 2 cut(s) | 82, 479 |
| MroXI | GAANNNNTTC | 1 cut(s) | 246 |
| MscI | TGGCCA | 2 cut(s) | 82, 479 |
| MseI | TTAA | 2 cut(s) | 255, 396 |
| MslI | CAYNNNNRTG | 3 cut(s) | 485, 515, 560 |
| Msp20I | TGGCCA | 2 cut(s) | 82, 479 |
| MspI | CCGG | 3 cut(s) | 68, 497, 587 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 529, 661 |
| NarI | GGCGCC | 1 cut(s) | 491 |
| NdeII | GATC | 3 cut(s) | 88, 384, 696 |
| NlaIII | CATG | 3 cut(s) | 418, 437, 484 |
| NlaIV | GGNNCC | 1 cut(s) | 492 |
| NmuCI | GTSAC | 3 cut(s) | 158, 421, 649 |
| PaqCI | CACCTGC | 1 cut(s) | 59 |
| PdmI | GAANNNNTTC | 1 cut(s) | 246 |
| PflFI | GACNNNGTC | 1 cut(s) | 440 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 78 |
| PinAI | ACCGGT | 1 cut(s) | 496 |
| PleI | GAGTC | 2 cut(s) | 155, 555 |
| PluTI | GGCGCC | 1 cut(s) | 494 |
| PpsI | GAGTC | 2 cut(s) | 155, 555 |
| Psp124BI | GAGCTC | 2 cut(s) | 405, 615 |
| PspFI | CCCAGC | 1 cut(s) | 113 |
| PspN4I | GGNNCC | 1 cut(s) | 492 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 304, 336 |
| PsuI | RGATCY | 1 cut(s) | 88 |
| PsyI | GACNNNGTC | 1 cut(s) | 440 |
| RsaI | GTAC | 1 cut(s) | 501 |
| RsaNI | GTAC | 1 cut(s) | 500 |
| RseI | CAYNNNNRTG | 3 cut(s) | 485, 515, 560 |
| SacI | GAGCTC | 2 cut(s) | 405, 615 |
| SaqAI | TTAA | 2 cut(s) | 255, 396 |
| Sau3AI | GATC | 3 cut(s) | 88, 384, 696 |
| SchI | GAGTC | 2 cut(s) | 155, 556 |
| SduI | GDGCHC | 4 cut(s) | 405, 557, 600, 615 |
| SfaNI | GCATC | 2 cut(s) | 283, 510 |
| SfcI | CTRYAG | 1 cut(s) | 375 |
| SfoI | GGCGCC | 1 cut(s) | 492 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 485, 515, 560 |
| Sse9I | AATT | 1 cut(s) | 269 |
| SsiI | CCGC | 1 cut(s) | 632 |
| SspDI | GGCGCC | 1 cut(s) | 490 |
| SspMI | CTAG | 2 cut(s) | 179, 390 |
| SstI | GAGCTC | 2 cut(s) | 405, 615 |
| TaaI | ACNGT | 1 cut(s) | 376 |
| TaiI | ACGT | 3 cut(s) | 156, 444, 450 |
| TaqI | TCGA | 3 cut(s) | 135, 366, 573 |
| TasI | AATT | 1 cut(s) | 269 |
| Tru1I | TTAA | 2 cut(s) | 255, 396 |
| Tru9I | TTAA | 2 cut(s) | 255, 396 |
| TscAI | CASTG | 1 cut(s) | 430 |
| TseFI | GTSAC | 3 cut(s) | 158, 421, 649 |
| Tsp45I | GTSAC | 3 cut(s) | 158, 421, 649 |
| TspDTI | ATGAA | 2 cut(s) | 117, 431 |
| TspGWI | ACGGA | 2 cut(s) | 81, 146 |
| TspRI | CASTG | 1 cut(s) | 430 |
| Tth111I | GACNNNGTC | 1 cut(s) | 440 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 78 |
| XapI | RAATTY | 1 cut(s) | 269 |
| XmnI | GAANNNNTTC | 1 cut(s) | 246 |
| XspI | CTAG | 2 cut(s) | 179, 390 |