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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AcoI | YGGCCR | 1 cut(s) | 13 |
| AcyI | GRCGYC | 1 cut(s) | 420 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 257, 328 |
| AflIII | ACRYGT | 1 cut(s) | 376 |
| AgsI | TTSAA | 1 cut(s) | 87 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 436, 468 |
| AluBI | AGCT | 3 cut(s) | 139, 161, 477 |
| AluI | AGCT | 3 cut(s) | 139, 161, 477 |
| Alw21I | GWGCWC | 1 cut(s) | 358 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| Alw44I | GTGCAC | 1 cut(s) | 354 |
| AoxI | GGCC | 1 cut(s) | 13 |
| ApaLI | GTGCAC | 1 cut(s) | 354 |
| AsuHPI | GGTGA | 1 cut(s) | 428 |
| AxyI | CCTNAGG | 1 cut(s) | 252 |
| BaeGI | GKGCMC | 1 cut(s) | 358 |
| BalI | TGGCCA | 1 cut(s) | 15 |
| BbsI | GAAGAC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 1 cut(s) | 358 |
| BclI | TGATCA | 1 cut(s) | 39 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 4 cut(s) | 201, 306, 456, 481 |
| BfmI | CTRYAG | 1 cut(s) | 238 |
| BmiI | GGNNCC | 3 cut(s) | 214, 362, 400 |
| BmsI | GCATC | 1 cut(s) | 339 |
| BpiI | GAAGAC | 1 cut(s) | 53 |
| BsaBI | GATNNNNATC | 1 cut(s) | 38 |
| BsaHI | GRCGYC | 1 cut(s) | 420 |
| BsaJI | CCNNGG | 2 cut(s) | 207, 364 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 257, 328 |
| Bse21I | CCTNAGG | 1 cut(s) | 252 |
| Bse8I | GATNNNNATC | 1 cut(s) | 38 |
| BseDI | CCNNGG | 2 cut(s) | 207, 364 |
| BseGI | GGATG | 1 cut(s) | 439 |
| BseJI | GATNNNNATC | 1 cut(s) | 38 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 257, 328 |
| BseRI | GAGGAG | 3 cut(s) | 381, 408, 411 |
| BseSI | GKGCMC | 1 cut(s) | 358 |
| BshFI | GGCC | 1 cut(s) | 15 |
| BsiHKAI | GWGCWC | 1 cut(s) | 358 |
| BsiSI | CCGG | 1 cut(s) | 405 |
| BslFI | GGGAC | 1 cut(s) | 302 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 257, 328 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsmBI | CGTCTC | 1 cut(s) | 73 |
| BsmFI | GGGAC | 1 cut(s) | 302 |
| BsnI | GGCC | 1 cut(s) | 15 |
| Bsp1286I | GDGCHC | 1 cut(s) | 358 |
| Bsp143I | GATC | 1 cut(s) | 39 |
| BspANI | GGCC | 1 cut(s) | 15 |
| BspLI | GGNNCC | 3 cut(s) | 214, 362, 400 |
| BssECI | CCNNGG | 2 cut(s) | 207, 364 |
| BssMI | GATC | 1 cut(s) | 39 |
| BssNI | GRCGYC | 1 cut(s) | 420 |
| Bst6I | CTCTTC | 1 cut(s) | 377 |
| BstACI | GRCGYC | 1 cut(s) | 420 |
| BstC8I | GCNNGC | 1 cut(s) | 354 |
| BstDEI | CTNAG | 2 cut(s) | 252, 279 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 255 |
| BstF5I | GGATG | 1 cut(s) | 439 |
| BstKTI | GATC | 1 cut(s) | 42 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 1 cut(s) | 39 |
| BstSFI | CTRYAG | 1 cut(s) | 238 |
| BstSLI | GKGCMC | 1 cut(s) | 358 |
| BstV2I | GAAGAC | 1 cut(s) | 53 |
| Bsu36I | CCTNAGG | 1 cut(s) | 252 |
| BsuRI | GGCC | 1 cut(s) | 15 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtsCI | GGATG | 1 cut(s) | 439 |
| Cac8I | GCNNGC | 1 cut(s) | 354 |
| CseI | GACGC | 1 cut(s) | 428 |
| CviAII | CATG | 4 cut(s) | 76, 151, 170, 449 |
| CviJI | RGCY | 7 cut(s) | 15, 20, 139, 161, 401, 408, 477 |
| CviKI_1 | RGCY | 7 cut(s) | 15, 20, 139, 161, 401, 408, 477 |
| DdeI | CTNAG | 2 cut(s) | 252, 279 |
| DpnI | GATC | 1 cut(s) | 41 |
| DpnII | GATC | 1 cut(s) | 39 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| EaeI | YGGCCR | 1 cut(s) | 13 |
| Eam1104I | CTCTTC | 1 cut(s) | 377 |
| EarI | CTCTTC | 1 cut(s) | 377 |
| Eco81I | CCTNAGG | 1 cut(s) | 252 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 255 |
| Esp3I | CGTCTC | 1 cut(s) | 73 |
| FaeI | CATG | 4 cut(s) | 79, 154, 173, 452 |
| FaqI | GGGAC | 1 cut(s) | 302 |
| FatI | CATG | 4 cut(s) | 75, 150, 169, 448 |
| FbaI | TGATCA | 1 cut(s) | 39 |
| FokI | GGATG | 1 cut(s) | 426 |
| FspBI | CTAG | 4 cut(s) | 201, 306, 456, 481 |
| HaeIII | GGCC | 1 cut(s) | 15 |
| HapII | CCGG | 1 cut(s) | 405 |
| HgaI | GACGC | 1 cut(s) | 428 |
| Hin1I | GRCGYC | 1 cut(s) | 420 |
| Hin1II | CATG | 4 cut(s) | 79, 154, 173, 452 |
| HincII | GTYRAC | 2 cut(s) | 374, 462 |
| HindII | GTYRAC | 2 cut(s) | 374, 462 |
| HindIII | AAGCTT | 1 cut(s) | 475 |
| HinfI | GANTC | 2 cut(s) | 49, 230 |
| HpaII | CCGG | 1 cut(s) | 405 |
| HphI | GGTGA | 1 cut(s) | 428 |
| Hpy166II | GTNNAC | 3 cut(s) | 356, 374, 462 |
| Hpy188I | TCNGA | 1 cut(s) | 99 |
| Hpy188III | TCNNGA | 1 cut(s) | 43 |
| Hpy8I | GTNNAC | 3 cut(s) | 356, 374, 462 |
| HpyAV | CCTTC | 3 cut(s) | 70, 326, 464 |
| HpyCH4IV | ACGT | 5 cut(s) | 118, 156, 262, 301, 376 |
| HpyCH4V | TGCA | 1 cut(s) | 356 |
| HpyF3I | CTNAG | 2 cut(s) | 252, 279 |
| HpySE526I | ACGT | 5 cut(s) | 118, 156, 262, 301, 376 |
| Hsp92I | GRCGYC | 1 cut(s) | 420 |
| Hsp92II | CATG | 4 cut(s) | 79, 154, 173, 452 |
| Ksp22I | TGATCA | 1 cut(s) | 39 |
| Kzo9I | GATC | 1 cut(s) | 39 |
| LmnI | GCTCC | 2 cut(s) | 268, 398 |
| LpnPI | CCDG | 1 cut(s) | 418 |
| LweI | GCATC | 1 cut(s) | 339 |
| MaeI | CTAG | 4 cut(s) | 201, 306, 456, 481 |
| MaeII | ACGT | 5 cut(s) | 118, 156, 262, 301, 376 |
| MaeIII | GTNAC | 2 cut(s) | 242, 416 |
| MalI | GATC | 1 cut(s) | 41 |
| MboI | GATC | 1 cut(s) | 39 |
| MboII | GAAGA | 3 cut(s) | 58, 199, 394 |
| MhlI | GDGCHC | 1 cut(s) | 358 |
| MlsI | TGGCCA | 1 cut(s) | 15 |
| MluCI | AATT | 3 cut(s) | 91, 292, 433 |
| MluNI | TGGCCA | 1 cut(s) | 15 |
| MlyI | GAGTC | 2 cut(s) | 43, 239 |
| MnlI | CCTC | 7 cut(s) | 251, 322, 359, 362, 386, 389, 412 |
| Mox20I | TGGCCA | 1 cut(s) | 15 |
| MscI | TGGCCA | 1 cut(s) | 15 |
| MslI | CAYNNNNRTG | 1 cut(s) | 182 |
| Msp20I | TGGCCA | 1 cut(s) | 15 |
| MspI | CCGG | 1 cut(s) | 405 |
| NdeII | GATC | 1 cut(s) | 39 |
| NlaIII | CATG | 4 cut(s) | 79, 154, 173, 452 |
| NlaIV | GGNNCC | 3 cut(s) | 214, 362, 400 |
| NmuCI | GTSAC | 2 cut(s) | 242, 416 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 204 |
| PleI | GAGTC | 2 cut(s) | 43, 238 |
| PpsI | GAGTC | 2 cut(s) | 43, 238 |
| PspN4I | GGNNCC | 3 cut(s) | 214, 362, 400 |
| RseI | CAYNNNNRTG | 1 cut(s) | 182 |
| Sau3AI | GATC | 1 cut(s) | 39 |
| SchI | GAGTC | 2 cut(s) | 43, 239 |
| SduI | GDGCHC | 1 cut(s) | 358 |
| SfaNI | GCATC | 1 cut(s) | 339 |
| SfcI | CTRYAG | 1 cut(s) | 238 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 182 |
| Sse9I | AATT | 3 cut(s) | 91, 292, 433 |
| SspMI | CTAG | 4 cut(s) | 201, 306, 456, 481 |
| TaiI | ACGT | 5 cut(s) | 121, 159, 265, 304, 379 |
| TaqI | TCGA | 1 cut(s) | 468 |
| TasI | AATT | 3 cut(s) | 91, 292, 433 |
| TseFI | GTSAC | 2 cut(s) | 242, 416 |
| Tsp45I | GTSAC | 2 cut(s) | 242, 416 |
| TspDTI | ATGAA | 2 cut(s) | 122, 167 |
| TspGWI | ACGGA | 1 cut(s) | 373 |
| VneI | GTGCAC | 1 cut(s) | 354 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 255 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 223 |
| XspI | CTAG | 4 cut(s) | 201, 306, 456, 481 |