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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 237 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 573 |
| AccII | CGCG | 2 cut(s) | 83, 513 |
| AccIII | TCCGGA | 1 cut(s) | 493 |
| AciI | CCGC | 1 cut(s) | 675 |
| AclI | AACGTT | 1 cut(s) | 156 |
| AclWI | GGATC | 1 cut(s) | 741 |
| AfaI | GTAC | 2 cut(s) | 132, 622 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 106, 524, 595 |
| AflIII | ACRYGT | 1 cut(s) | 643 |
| AgsI | TTSAA | 3 cut(s) | 32, 220, 354 |
| AluBI | AGCT | 6 cut(s) | 20, 44, 124, 248, 406, 428 |
| AluI | AGCT | 6 cut(s) | 20, 44, 124, 248, 406, 428 |
| Alw21I | GWGCWC | 1 cut(s) | 408 |
| Alw26I | GTCTC | 1 cut(s) | 340 |
| AlwI | GGATC | 1 cut(s) | 741 |
| Aor13HI | TCCGGA | 1 cut(s) | 493 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 249 |
| AspLEI | GCGC | 2 cut(s) | 85, 515 |
| AspS9I | GGNCC | 1 cut(s) | 575 |
| AvaII | GGWCC | 1 cut(s) | 575 |
| BanII | GRGCYC | 1 cut(s) | 408 |
| Bbv12I | GWGCWC | 1 cut(s) | 408 |
| BccI | CCATC | 3 cut(s) | 186, 262, 838 |
| BcoDI | GTCTC | 1 cut(s) | 340 |
| BfaI | CTAG | 3 cut(s) | 468, 564, 728 |
| BfmI | CTRYAG | 1 cut(s) | 505 |
| Bme18I | GGWCC | 1 cut(s) | 575 |
| BmgT120I | GGNCC | 1 cut(s) | 575 |
| BmiI | GGNNCC | 4 cut(s) | 415, 481, 629, 679 |
| BmsI | GCATC | 1 cut(s) | 775 |
| BpuEI | CTTGAG | 1 cut(s) | 158 |
| BsaBI | GATNNNNATC | 2 cut(s) | 848, 854 |
| BsaJI | CCNNGG | 4 cut(s) | 202, 519, 631, 688 |
| BsaWI | WCCGGW | 1 cut(s) | 493 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 106, 524, 595 |
| Bse1I | ACTGG | 1 cut(s) | 744 |
| Bse3DI | GCAATG | 1 cut(s) | 718 |
| Bse8I | GATNNNNATC | 2 cut(s) | 848, 854 |
| BseAI | TCCGGA | 1 cut(s) | 493 |
| BseDI | CCNNGG | 4 cut(s) | 202, 519, 631, 688 |
| BseGI | GGATG | 2 cut(s) | 389, 766 |
| BseJI | GATNNNNATC | 2 cut(s) | 848, 854 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 106, 524, 595 |
| BseMI | GCAATG | 1 cut(s) | 718 |
| BseMII | CTCAG | 2 cut(s) | 255, 420 |
| BseNI | ACTGG | 1 cut(s) | 744 |
| BseRI | GAGGAG | 2 cut(s) | 631, 664 |
| Bsh1236I | CGCG | 2 cut(s) | 83, 513 |
| BsiHKAI | GWGCWC | 1 cut(s) | 408 |
| BsiSI | CCGG | 1 cut(s) | 494 |
| BslFI | GGGAC | 1 cut(s) | 569 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 106, 524, 595 |
| BsmAI | GTCTC | 1 cut(s) | 340 |
| BsmBI | CGTCTC | 1 cut(s) | 340 |
| BsmFI | GGGAC | 1 cut(s) | 569 |
| BsmI | GAATGC | 1 cut(s) | 382 |
| Bsp1286I | GDGCHC | 1 cut(s) | 408 |
| Bsp13I | TCCGGA | 1 cut(s) | 493 |
| Bsp143I | GATC | 4 cut(s) | 733, 837, 849, 855 |
| Bsp19I | CCATGG | 1 cut(s) | 688 |
| BspACI | CCGC | 1 cut(s) | 675 |
| BspCNI | CTCAG | 2 cut(s) | 254, 421 |
| BspEI | TCCGGA | 1 cut(s) | 493 |
| BspFNI | CGCG | 2 cut(s) | 83, 513 |
| BspHI | TCATGA | 3 cut(s) | 60, 400, 840 |
| BspLI | GGNNCC | 4 cut(s) | 415, 481, 629, 679 |
| BspPI | GGATC | 1 cut(s) | 741 |
| BspQI | GCTCTTC | 1 cut(s) | 255 |
| BsrDI | GCAATG | 1 cut(s) | 718 |
| BsrI | ACTGG | 1 cut(s) | 744 |
| BssECI | CCNNGG | 4 cut(s) | 202, 519, 631, 688 |
| BssMI | GATC | 4 cut(s) | 733, 837, 849, 855 |
| BssT1I | CCWWGG | 2 cut(s) | 519, 688 |
| Bst4CI | ACNGT | 1 cut(s) | 632 |
| Bst6I | CTCTTC | 1 cut(s) | 255 |
| BstC8I | GCNNGC | 1 cut(s) | 18 |
| BstDEI | CTNAG | 3 cut(s) | 241, 429, 546 |
| BstDSI | CCRYGG | 2 cut(s) | 631, 688 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 104 |
| BstF5I | GGATG | 2 cut(s) | 389, 766 |
| BstFNI | CGCG | 2 cut(s) | 83, 513 |
| BstHHI | GCGC | 2 cut(s) | 85, 515 |
| BstKTI | GATC | 4 cut(s) | 736, 840, 852, 858 |
| BstMAI | GTCTC | 1 cut(s) | 340 |
| BstMBI | GATC | 4 cut(s) | 733, 837, 849, 855 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 763, 814 |
| BstNSI | RCATGY | 1 cut(s) | 761 |
| BstSFI | CTRYAG | 1 cut(s) | 505 |
| BstUI | CGCG | 2 cut(s) | 83, 513 |
| BstX2I | RGATCY | 1 cut(s) | 733 |
| BstYI | RGATCY | 1 cut(s) | 733 |
| BtgI | CCRYGG | 2 cut(s) | 631, 688 |
| BtsCI | GGATG | 2 cut(s) | 389, 766 |
| Cac8I | GCNNGC | 1 cut(s) | 18 |
| CciI | TCATGA | 3 cut(s) | 60, 400, 840 |
| CfoI | GCGC | 2 cut(s) | 85, 515 |
| Cfr13I | GGNCC | 1 cut(s) | 575 |
| CseI | GACGC | 2 cut(s) | 89, 537 |
| Csp6I | GTAC | 2 cut(s) | 131, 621 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 711, 746 |
| CviAII | CATG | 8 cut(s) | 61, 73, 401, 418, 689, 758, 825, 841 |
| CviQI | GTAC | 2 cut(s) | 131, 621 |
| DdeI | CTNAG | 3 cut(s) | 241, 429, 546 |
| DpnI | GATC | 4 cut(s) | 735, 839, 851, 857 |
| DpnII | GATC | 4 cut(s) | 733, 837, 849, 855 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 573 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 573 |
| Eam1104I | CTCTTC | 1 cut(s) | 255 |
| EarI | CTCTTC | 1 cut(s) | 255 |
| EciI | GGCGGA | 1 cut(s) | 690 |
| Ecl136II | GAGCTC | 1 cut(s) | 406 |
| Eco130I | CCWWGG | 2 cut(s) | 519, 688 |
| Eco24I | GRGCYC | 1 cut(s) | 408 |
| Eco47I | GGWCC | 1 cut(s) | 575 |
| Eco53kI | GAGCTC | 1 cut(s) | 406 |
| EcoICRI | GAGCTC | 1 cut(s) | 406 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 104 |
| EcoT14I | CCWWGG | 2 cut(s) | 519, 688 |
| EcoT22I | ATGCAT | 1 cut(s) | 789 |
| EcoT38I | GRGCYC | 1 cut(s) | 408 |
| ErhI | CCWWGG | 2 cut(s) | 519, 688 |
| Esp3I | CGTCTC | 1 cut(s) | 340 |
| FaeI | CATG | 8 cut(s) | 64, 76, 404, 421, 692, 761, 828, 844 |
| FaqI | GGGAC | 1 cut(s) | 569 |
| FatI | CATG | 8 cut(s) | 60, 72, 400, 417, 688, 757, 824, 840 |
| FokI | GGATG | 2 cut(s) | 396, 753 |
| FriOI | GRGCYC | 1 cut(s) | 408 |
| FspBI | CTAG | 3 cut(s) | 468, 564, 728 |
| GlaI | GCGC | 2 cut(s) | 84, 514 |
| HapII | CCGG | 1 cut(s) | 494 |
| HgaI | GACGC | 2 cut(s) | 89, 537 |
| HhaI | GCGC | 2 cut(s) | 85, 515 |
| Hin1II | CATG | 8 cut(s) | 64, 76, 404, 421, 692, 761, 828, 844 |
| Hin6I | GCGC | 2 cut(s) | 83, 513 |
| HinP1I | GCGC | 2 cut(s) | 83, 513 |
| HincII | GTYRAC | 1 cut(s) | 641 |
| HindII | GTYRAC | 1 cut(s) | 641 |
| HinfI | GANTC | 2 cut(s) | 164, 497 |
| HpaII | CCGG | 1 cut(s) | 494 |
| Hpy166II | GTNNAC | 2 cut(s) | 623, 641 |
| Hpy188I | TCNGA | 3 cut(s) | 244, 366, 685 |
| Hpy188III | TCNNGA | 9 cut(s) | 61, 161, 176, 401, 494, 564, 802, 841, 853 |
| Hpy8I | GTNNAC | 2 cut(s) | 623, 641 |
| HpyAV | CCTTC | 2 cut(s) | 337, 593 |
| HpyCH4III | ACNGT | 1 cut(s) | 632 |
| HpyCH4IV | ACGT | 3 cut(s) | 156, 568, 643 |
| HpyCH4V | TGCA | 3 cut(s) | 380, 781, 787 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 763, 814 |
| HpyF3I | CTNAG | 3 cut(s) | 241, 429, 546 |
| HpySE526I | ACGT | 3 cut(s) | 156, 568, 643 |
| Hsp92II | CATG | 8 cut(s) | 64, 76, 404, 421, 692, 761, 828, 844 |
| HspAI | GCGC | 2 cut(s) | 83, 513 |
| Kpn2I | TCCGGA | 1 cut(s) | 493 |
| Kzo9I | GATC | 4 cut(s) | 733, 837, 849, 855 |
| LguI | GCTCTTC | 1 cut(s) | 255 |
| LmnI | GCTCC | 3 cut(s) | 90, 413, 677 |
| LpnPI | CCDG | 6 cut(s) | 189, 366, 507, 558, 725, 784 |
| LweI | GCATC | 1 cut(s) | 775 |
| MaeI | CTAG | 3 cut(s) | 468, 564, 728 |
| MaeII | ACGT | 3 cut(s) | 156, 568, 643 |
| MaeIII | GTNAC | 2 cut(s) | 161, 695 |
| MalI | GATC | 4 cut(s) | 735, 839, 851, 857 |
| MboI | GATC | 4 cut(s) | 733, 837, 849, 855 |
| MboII | GAAGA | 3 cut(s) | 242, 466, 847 |
| MflI | RGATCY | 1 cut(s) | 733 |
| MhlI | GDGCHC | 1 cut(s) | 408 |
| MluCI | AATT | 4 cut(s) | 54, 358, 559, 819 |
| MlyI | GAGTC | 2 cut(s) | 158, 506 |
| MmeI | TCCRAC | 1 cut(s) | 708 |
| Mph1103I | ATGCAT | 1 cut(s) | 789 |
| MroI | TCCGGA | 1 cut(s) | 493 |
| MroXI | GAANNNNTTC | 1 cut(s) | 249 |
| MslI | CAYNNNNRTG | 1 cut(s) | 75 |
| MspI | CCGG | 1 cut(s) | 494 |
| Mva1269I | GAATGC | 1 cut(s) | 382 |
| MvnI | CGCG | 2 cut(s) | 83, 513 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 763, 814 |
| NcoI | CCATGG | 1 cut(s) | 688 |
| NdeII | GATC | 4 cut(s) | 733, 837, 849, 855 |
| NlaIII | CATG | 8 cut(s) | 64, 76, 404, 421, 692, 761, 828, 844 |
| NlaIV | GGNNCC | 4 cut(s) | 415, 481, 629, 679 |
| NmeAIII | GCCGAG | 1 cut(s) | 183 |
| NmuCI | GTSAC | 1 cut(s) | 161 |
| NsiI | ATGCAT | 1 cut(s) | 789 |
| NspI | RCATGY | 1 cut(s) | 761 |
| PagI | TCATGA | 3 cut(s) | 60, 400, 840 |
| PciSI | GCTCTTC | 1 cut(s) | 255 |
| PctI | GAATGC | 1 cut(s) | 382 |
| PdmI | GAANNNNTTC | 1 cut(s) | 249 |
| PleI | GAGTC | 2 cut(s) | 158, 505 |
| PpsI | GAGTC | 2 cut(s) | 158, 505 |
| PsiI | TTATAA | 1 cut(s) | 237 |
| Psp124BI | GAGCTC | 1 cut(s) | 408 |
| Psp1406I | AACGTT | 1 cut(s) | 156 |
| PspN4I | GGNNCC | 4 cut(s) | 415, 481, 629, 679 |
| PspPI | GGNCC | 1 cut(s) | 575 |
| PsuI | RGATCY | 1 cut(s) | 733 |
| RsaI | GTAC | 2 cut(s) | 132, 622 |
| RsaNI | GTAC | 2 cut(s) | 131, 621 |
| RseI | CAYNNNNRTG | 1 cut(s) | 75 |
| SacI | GAGCTC | 1 cut(s) | 408 |
| SapI | GCTCTTC | 1 cut(s) | 255 |
| Sau3AI | GATC | 4 cut(s) | 733, 837, 849, 855 |
| Sau96I | GGNCC | 1 cut(s) | 575 |
| SchI | GAGTC | 2 cut(s) | 158, 506 |
| SduI | GDGCHC | 1 cut(s) | 408 |
| SfaNI | GCATC | 1 cut(s) | 775 |
| SfcI | CTRYAG | 1 cut(s) | 505 |
| SinI | GGWCC | 1 cut(s) | 575 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 75 |
| SmlI | CTYRAG | 1 cut(s) | 137 |
| SmoI | CTYRAG | 1 cut(s) | 137 |
| Sse9I | AATT | 4 cut(s) | 54, 358, 559, 819 |
| SsiI | CCGC | 1 cut(s) | 675 |
| SspMI | CTAG | 3 cut(s) | 468, 564, 728 |
| SstI | GAGCTC | 1 cut(s) | 408 |
| StyI | CCWWGG | 2 cut(s) | 519, 688 |
| TaaI | ACNGT | 1 cut(s) | 632 |
| TaiI | ACGT | 3 cut(s) | 159, 571, 646 |
| TaqI | TCGA | 1 cut(s) | 854 |
| TasI | AATT | 4 cut(s) | 54, 358, 559, 819 |
| TatI | WGTACW | 1 cut(s) | 620 |
| TseFI | GTSAC | 1 cut(s) | 161 |
| Tsp45I | GTSAC | 1 cut(s) | 161 |
| TspDTI | ATGAA | 3 cut(s) | 89, 389, 434 |
| TspGWI | ACGGA | 2 cut(s) | 157, 640 |
| VpaK11BI | GGWCC | 1 cut(s) | 575 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 104 |
| XbaI | TCTAGA | 1 cut(s) | 563 |
| XceI | RCATGY | 1 cut(s) | 761 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 123 |
| XmnI | GAANNNNTTC | 1 cut(s) | 249 |
| XspI | CTAG | 3 cut(s) | 468, 564, 728 |
| Zsp2I | ATGCAT | 1 cut(s) | 789 |