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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 402, 447 |
| AccB1I | GGYRCC | 2 cut(s) | 623, 644 |
| AccBSI | CCGCTC | 1 cut(s) | 475 |
| AciI | CCGC | 3 cut(s) | 475, 523, 557 |
| AclWI | GGATC | 1 cut(s) | 335 |
| AcsI | RAATTY | 1 cut(s) | 870 |
| AcuI | CTGAAG | 1 cut(s) | 828 |
| AcvI | CACGTG | 2 cut(s) | 566, 584 |
| AcyI | GRCGYC | 1 cut(s) | 624 |
| AdeI | CACNNNGTG | 2 cut(s) | 569, 674 |
| AfaI | GTAC | 1 cut(s) | 743 |
| AfeI | AGCGCT | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 461, 462, 532, 614, 658 |
| AflIII | ACRYGT | 2 cut(s) | 563, 581 |
| AgsI | TTSAA | 5 cut(s) | 124, 131, 160, 408, 802 |
| AjiI | CACGTC | 1 cut(s) | 614 |
| AjnI | CCWGG | 2 cut(s) | 531, 607 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 6 cut(s) | 64, 188, 244, 346, 368, 806 |
| AluI | AGCT | 6 cut(s) | 64, 188, 244, 346, 368, 806 |
| Alw21I | GWGCWC | 2 cut(s) | 679, 822 |
| Alw26I | GTCTC | 2 cut(s) | 280, 295 |
| Alw44I | GTGCAC | 2 cut(s) | 675, 818 |
| AlwI | GGATC | 1 cut(s) | 335 |
| Aor51HI | AGCGCT | 1 cut(s) | 75 |
| AoxI | GGCC | 2 cut(s) | 410, 721 |
| ApaLI | GTGCAC | 2 cut(s) | 675, 818 |
| ApeKI | GCWGC | 1 cut(s) | 830 |
| ApoI | RAATTY | 1 cut(s) | 870 |
| AspA2I | CCTAGG | 1 cut(s) | 656 |
| AspLEI | GCGC | 3 cut(s) | 76, 468, 626 |
| AspS9I | GGNCC | 2 cut(s) | 411, 721 |
| AvrII | CCTAGG | 1 cut(s) | 656 |
| AxyI | CCTNAGG | 1 cut(s) | 725 |
| BaeGI | GKGCMC | 2 cut(s) | 679, 822 |
| BanI | GGYRCC | 2 cut(s) | 623, 644 |
| BanII | GRGCYC | 1 cut(s) | 515 |
| BauI | CACGAG | 2 cut(s) | 331, 633 |
| BbrPI | CACGTG | 2 cut(s) | 566, 584 |
| Bbv12I | GWGCWC | 2 cut(s) | 679, 822 |
| BbvI | GCAGC | 1 cut(s) | 817 |
| BccI | CCATC | 1 cut(s) | 761 |
| BciT130I | CCWGG | 2 cut(s) | 533, 609 |
| BciVI | GTATCC | 1 cut(s) | 553 |
| BcoDI | GTCTC | 2 cut(s) | 280, 295 |
| BfaI | CTAG | 2 cut(s) | 77, 657 |
| BfmI | CTRYAG | 2 cut(s) | 789, 831 |
| BfoI | RGCGCY | 2 cut(s) | 77, 627 |
| BfuI | GTATCC | 1 cut(s) | 553 |
| BisI | GCNGC | 1 cut(s) | 831 |
| BlnI | CCTAGG | 1 cut(s) | 656 |
| BlsI | GCNGC | 1 cut(s) | 832 |
| Bme1390I | CCNGG | 2 cut(s) | 533, 609 |
| BmgBI | CACGTC | 1 cut(s) | 614 |
| BmgT120I | GGNCC | 2 cut(s) | 411, 721 |
| BmiI | GGNNCC | 2 cut(s) | 625, 646 |
| BmrFI | CCNGG | 2 cut(s) | 533, 609 |
| BmsI | GCATC | 3 cut(s) | 43, 612, 817 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 464, 496 |
| BpuEI | CTTGAG | 1 cut(s) | 412 |
| BsaAI | YACGTR | 2 cut(s) | 566, 584 |
| BsaBI | GATNNNNATC | 1 cut(s) | 780 |
| BsaHI | GRCGYC | 1 cut(s) | 624 |
| BsaI | GGTCTC | 1 cut(s) | 295 |
| BsaJI | CCNNGG | 3 cut(s) | 607, 627, 656 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 580, 610 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 461, 462, 532, 614, 658 |
| Bse1I | ACTGG | 1 cut(s) | 325 |
| Bse21I | CCTNAGG | 1 cut(s) | 725 |
| Bse3DI | GCAATG | 2 cut(s) | 100, 580 |
| Bse8I | GATNNNNATC | 1 cut(s) | 780 |
| BseBI | CCWGG | 2 cut(s) | 533, 609 |
| BseDI | CCNNGG | 3 cut(s) | 607, 627, 656 |
| BseGI | GGATG | 3 cut(s) | 58, 603, 832 |
| BseJI | GATNNNNATC | 1 cut(s) | 780 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 461, 462, 532, 614, 658 |
| BseMI | GCAATG | 2 cut(s) | 100, 580 |
| BseMII | CTCAG | 4 cut(s) | 40, 291, 360, 716 |
| BseNI | ACTGG | 1 cut(s) | 325 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseSI | GKGCMC | 2 cut(s) | 679, 822 |
| BseXI | GCAGC | 1 cut(s) | 817 |
| BshFI | GGCC | 2 cut(s) | 412, 723 |
| BshNI | GGYRCC | 2 cut(s) | 623, 644 |
| BsiHKAI | GWGCWC | 2 cut(s) | 679, 822 |
| BslFI | GGGAC | 1 cut(s) | 507 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 461, 462, 532, 614, 658 |
| BsmAI | GTCTC | 2 cut(s) | 280, 295 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 1 cut(s) | 507 |
| BsmI | GAATGC | 1 cut(s) | 668 |
| BsnI | GGCC | 2 cut(s) | 412, 723 |
| Bso31I | GGTCTC | 1 cut(s) | 295 |
| Bsp1286I | GDGCHC | 3 cut(s) | 515, 679, 822 |
| Bsp143I | GATC | 2 cut(s) | 45, 327 |
| Bsp19I | CCATGG | 1 cut(s) | 627 |
| BspACI | CCGC | 3 cut(s) | 475, 523, 557 |
| BspANI | GGCC | 2 cut(s) | 412, 723 |
| BspCNI | CTCAG | 4 cut(s) | 39, 290, 361, 717 |
| BspHI | TCATGA | 1 cut(s) | 433 |
| BspLI | GGNNCC | 2 cut(s) | 625, 646 |
| BspMAI | CTGCAG | 1 cut(s) | 835 |
| BspPI | GGATC | 1 cut(s) | 335 |
| BspQI | GCTCTTC | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 2 cut(s) | 623, 644 |
| BspTNI | GGTCTC | 1 cut(s) | 295 |
| BsrBI | CCGCTC | 1 cut(s) | 475 |
| BsrDI | GCAATG | 2 cut(s) | 100, 580 |
| BsrI | ACTGG | 1 cut(s) | 325 |
| BssECI | CCNNGG | 3 cut(s) | 607, 627, 656 |
| BssMI | GATC | 2 cut(s) | 45, 327 |
| BssNI | GRCGYC | 1 cut(s) | 624 |
| BssSI | CACGAG | 2 cut(s) | 331, 633 |
| BssT1I | CCWWGG | 2 cut(s) | 627, 656 |
| Bst2BI | CACGAG | 2 cut(s) | 331, 633 |
| Bst2UI | CCWGG | 2 cut(s) | 533, 609 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstACI | GRCGYC | 1 cut(s) | 624 |
| BstBAI | YACGTR | 2 cut(s) | 566, 584 |
| BstDEI | CTNAG | 7 cut(s) | 26, 277, 369, 423, 483, 725, 894 |
| BstDSI | CCRYGG | 1 cut(s) | 627 |
| BstF5I | GGATG | 3 cut(s) | 58, 603, 832 |
| BstH2I | RGCGCY | 2 cut(s) | 77, 627 |
| BstHHI | GCGC | 3 cut(s) | 76, 468, 626 |
| BstKTI | GATC | 2 cut(s) | 48, 330 |
| BstMAI | GTCTC | 2 cut(s) | 280, 295 |
| BstMBI | GATC | 2 cut(s) | 45, 327 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 82, 472 |
| BstNI | CCWGG | 2 cut(s) | 533, 609 |
| BstSCI | CCNGG | 2 cut(s) | 531, 607 |
| BstSFI | CTRYAG | 2 cut(s) | 789, 831 |
| BstSLI | GKGCMC | 2 cut(s) | 679, 822 |
| BstV1I | GCAGC | 1 cut(s) | 817 |
| Bsu36I | CCTNAGG | 1 cut(s) | 725 |
| BsuI | GTATCC | 1 cut(s) | 553 |
| BsuRI | GGCC | 2 cut(s) | 412, 723 |
| BtgI | CCRYGG | 1 cut(s) | 627 |
| BtrI | CACGTC | 1 cut(s) | 614 |
| BtsCI | GGATG | 3 cut(s) | 58, 603, 832 |
| CciI | TCATGA | 1 cut(s) | 433 |
| CfoI | GCGC | 3 cut(s) | 76, 468, 626 |
| Cfr13I | GGNCC | 2 cut(s) | 411, 721 |
| Csp6I | GTAC | 1 cut(s) | 742 |
| CviAII | CATG | 6 cut(s) | 205, 377, 434, 497, 599, 628 |
| CviQI | GTAC | 1 cut(s) | 742 |
| DdeI | CTNAG | 7 cut(s) | 26, 277, 369, 423, 483, 725, 894 |
| DinI | GGCGCC | 1 cut(s) | 625 |
| DpnI | GATC | 2 cut(s) | 47, 329 |
| DpnII | GATC | 2 cut(s) | 45, 327 |
| DraIII | CACNNNGTG | 2 cut(s) | 569, 674 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| Eco130I | CCWWGG | 2 cut(s) | 627, 656 |
| Eco24I | GRGCYC | 1 cut(s) | 515 |
| Eco31I | GGTCTC | 1 cut(s) | 295 |
| Eco47III | AGCGCT | 1 cut(s) | 75 |
| Eco57I | CTGAAG | 1 cut(s) | 828 |
| Eco72I | CACGTG | 2 cut(s) | 566, 584 |
| Eco81I | CCTNAGG | 1 cut(s) | 725 |
| EcoO109I | RGGNCCY | 1 cut(s) | 721 |
| EcoRII | CCWGG | 2 cut(s) | 531, 607 |
| EcoT14I | CCWWGG | 2 cut(s) | 627, 656 |
| EcoT38I | GRGCYC | 1 cut(s) | 515 |
| EgeI | GGCGCC | 1 cut(s) | 625 |
| EheI | GGCGCC | 1 cut(s) | 625 |
| ErhI | CCWWGG | 2 cut(s) | 627, 656 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 6 cut(s) | 208, 380, 437, 500, 602, 631 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 729, 761 |
| FaqI | GGGAC | 1 cut(s) | 507 |
| FatI | CATG | 6 cut(s) | 204, 376, 433, 496, 598, 627 |
| Fnu4HI | GCNGC | 1 cut(s) | 831 |
| FokI | GGATG | 3 cut(s) | 65, 590, 839 |
| FriOI | GRGCYC | 1 cut(s) | 515 |
| Fsp4HI | GCNGC | 1 cut(s) | 831 |
| FspBI | CTAG | 2 cut(s) | 77, 657 |
| GlaI | GCGC | 3 cut(s) | 75, 467, 625 |
| GluI | GCNGC | 1 cut(s) | 831 |
| HaeII | RGCGCY | 2 cut(s) | 77, 627 |
| HaeIII | GGCC | 2 cut(s) | 412, 723 |
| HhaI | GCGC | 3 cut(s) | 76, 468, 626 |
| Hin1I | GRCGYC | 1 cut(s) | 624 |
| Hin1II | CATG | 6 cut(s) | 208, 380, 437, 500, 602, 631 |
| Hin6I | GCGC | 3 cut(s) | 74, 466, 624 |
| HinP1I | GCGC | 3 cut(s) | 74, 466, 624 |
| HinfI | GANTC | 1 cut(s) | 104 |
| Hpy166II | GTNNAC | 4 cut(s) | 221, 677, 742, 820 |
| Hpy188I | TCNGA | 2 cut(s) | 29, 184 |
| Hpy188III | TCNNGA | 3 cut(s) | 331, 391, 434 |
| Hpy8I | GTNNAC | 4 cut(s) | 221, 677, 742, 820 |
| HpyAV | CCTTC | 4 cut(s) | 118, 277, 530, 662 |
| HpyCH4IV | ACGT | 4 cut(s) | 565, 583, 613, 673 |
| HpyCH4V | TGCA | 7 cut(s) | 56, 452, 546, 677, 749, 820, 833 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 82, 472 |
| HpyF3I | CTNAG | 7 cut(s) | 26, 277, 369, 423, 483, 725, 894 |
| HpySE526I | ACGT | 4 cut(s) | 565, 583, 613, 673 |
| Hsp92I | GRCGYC | 1 cut(s) | 624 |
| Hsp92II | CATG | 6 cut(s) | 208, 380, 437, 500, 602, 631 |
| HspAI | GCGC | 3 cut(s) | 74, 466, 624 |
| KasI | GGCGCC | 1 cut(s) | 623 |
| Kzo9I | GATC | 2 cut(s) | 45, 327 |
| LguI | GCTCTTC | 1 cut(s) | 75 |
| LmnI | GCTCC | 2 cut(s) | 472, 730 |
| LpnPI | CCDG | 7 cut(s) | 129, 306, 518, 545, 594, 621, 737 |
| Lsp1109I | GCAGC | 1 cut(s) | 817 |
| LweI | GCATC | 3 cut(s) | 43, 612, 817 |
| MaeI | CTAG | 2 cut(s) | 77, 657 |
| MaeII | ACGT | 4 cut(s) | 565, 583, 613, 673 |
| MaeIII | GTNAC | 1 cut(s) | 577 |
| MalI | GATC | 2 cut(s) | 47, 329 |
| MbiI | CCGCTC | 1 cut(s) | 475 |
| MboI | GATC | 2 cut(s) | 45, 327 |
| MboII | GAAGA | 7 cut(s) | 92, 764, 767, 770, 773, 776, 821 |
| MfeI | CAATTG | 1 cut(s) | 282 |
| MhlI | GDGCHC | 3 cut(s) | 515, 679, 822 |
| MluCI | AATT | 8 cut(s) | 178, 246, 282, 397, 403, 442, 683, 870 |
| Mly113I | GGCGCC | 1 cut(s) | 624 |
| MseI | TTAA | 2 cut(s) | 249, 687 |
| MslI | CAYNNNNRTG | 1 cut(s) | 825 |
| MspR9I | CCNGG | 2 cut(s) | 533, 609 |
| MunI | CAATTG | 1 cut(s) | 282 |
| Mva1269I | GAATGC | 1 cut(s) | 668 |
| MvaI | CCWGG | 2 cut(s) | 533, 609 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 82, 472 |
| NarI | GGCGCC | 1 cut(s) | 624 |
| NcoI | CCATGG | 1 cut(s) | 627 |
| NdeII | GATC | 2 cut(s) | 45, 327 |
| NlaIII | CATG | 6 cut(s) | 208, 380, 437, 500, 602, 631 |
| NlaIV | GGNNCC | 2 cut(s) | 625, 646 |
| NmuCI | GTSAC | 1 cut(s) | 577 |
| PagI | TCATGA | 1 cut(s) | 433 |
| PciSI | GCTCTTC | 1 cut(s) | 75 |
| PctI | GAATGC | 1 cut(s) | 668 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 1 cut(s) | 832 |
| PluTI | GGCGCC | 1 cut(s) | 627 |
| PmaCI | CACGTG | 2 cut(s) | 566, 584 |
| PmlI | CACGTG | 2 cut(s) | 566, 584 |
| Ppu21I | YACGTR | 2 cut(s) | 566, 584 |
| PsiI | TTATAA | 2 cut(s) | 402, 447 |
| Psp6I | CCWGG | 2 cut(s) | 531, 607 |
| PspCI | CACGTG | 2 cut(s) | 566, 584 |
| PspGI | CCWGG | 2 cut(s) | 531, 607 |
| PspN4I | GGNNCC | 2 cut(s) | 625, 646 |
| PspPI | GGNCC | 2 cut(s) | 411, 721 |
| PstI | CTGCAG | 1 cut(s) | 835 |
| RsaI | GTAC | 1 cut(s) | 743 |
| RsaNI | GTAC | 1 cut(s) | 742 |
| RseI | CAYNNNNRTG | 1 cut(s) | 825 |
| SapI | GCTCTTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 2 cut(s) | 249, 687 |
| SatI | GCNGC | 1 cut(s) | 831 |
| Sau3AI | GATC | 2 cut(s) | 45, 327 |
| Sau96I | GGNCC | 2 cut(s) | 411, 721 |
| ScrFI | CCNGG | 2 cut(s) | 533, 609 |
| SduI | GDGCHC | 3 cut(s) | 515, 679, 822 |
| SfaNI | GCATC | 3 cut(s) | 43, 612, 817 |
| SfcI | CTRYAG | 2 cut(s) | 789, 831 |
| SfoI | GGCGCC | 1 cut(s) | 625 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 825 |
| SmlI | CTYRAG | 1 cut(s) | 391 |
| SmoI | CTYRAG | 1 cut(s) | 391 |
| Sse9I | AATT | 8 cut(s) | 178, 246, 282, 397, 403, 442, 683, 870 |
| SsiI | CCGC | 3 cut(s) | 475, 523, 557 |
| SspDI | GGCGCC | 1 cut(s) | 623 |
| SspMI | CTAG | 2 cut(s) | 77, 657 |
| StyD4I | CCNGG | 2 cut(s) | 531, 607 |
| StyI | CCWWGG | 2 cut(s) | 627, 656 |
| TaiI | ACGT | 4 cut(s) | 568, 586, 616, 676 |
| TaqI | TCGA | 1 cut(s) | 44 |
| TasI | AATT | 8 cut(s) | 178, 246, 282, 397, 403, 442, 683, 870 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 2 cut(s) | 249, 687 |
| Tru9I | TTAA | 2 cut(s) | 249, 687 |
| TseFI | GTSAC | 1 cut(s) | 577 |
| TseI | GCWGC | 1 cut(s) | 830 |
| Tsp45I | GTSAC | 1 cut(s) | 577 |
| TspDTI | ATGAA | 3 cut(s) | 329, 422, 828 |
| TspGWI | ACGGA | 1 cut(s) | 340 |
| VneI | GTGCAC | 2 cut(s) | 675, 818 |
| XapI | RAATTY | 1 cut(s) | 870 |
| XmaJI | CCTAGG | 1 cut(s) | 656 |
| XspI | CTAG | 2 cut(s) | 77, 657 |