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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 574 |
| AccII | CGCG | 2 cut(s) | 413, 425 |
| AcsI | RAATTY | 1 cut(s) | 182 |
| AcuI | CTGAAG | 4 cut(s) | 57, 132, 143, 410 |
| AdeI | CACNNNGTG | 1 cut(s) | 574 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 478, 502, 574 |
| AjiI | CACGTC | 2 cut(s) | 136, 556 |
| AjnI | CCWGG | 1 cut(s) | 590 |
| AluBI | AGCT | 3 cut(s) | 199, 209, 604 |
| AluI | AGCT | 3 cut(s) | 199, 209, 604 |
| Alw21I | GWGCWC | 1 cut(s) | 201 |
| Alw26I | GTCTC | 1 cut(s) | 468 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 209 |
| AoxI | GGCC | 4 cut(s) | 460, 493, 504, 564 |
| ApaI | GGGCCC | 1 cut(s) | 497 |
| ApeKI | GCWGC | 1 cut(s) | 252 |
| ApoI | RAATTY | 1 cut(s) | 182 |
| AseI | ATTAAT | 1 cut(s) | 15 |
| AspLEI | GCGC | 1 cut(s) | 427 |
| AspS9I | GGNCC | 7 cut(s) | 118, 129, 493, 494, 505, 565, 594 |
| AsuC2I | CCSGG | 1 cut(s) | 439 |
| AsuHPI | GGTGA | 2 cut(s) | 22, 291 |
| AvaII | GGWCC | 3 cut(s) | 118, 129, 594 |
| BaeGI | GKGCMC | 1 cut(s) | 497 |
| BanII | GRGCYC | 2 cut(s) | 201, 497 |
| Bbv12I | GWGCWC | 1 cut(s) | 201 |
| BbvI | GCAGC | 1 cut(s) | 264 |
| BccI | CCATC | 1 cut(s) | 416 |
| BciT130I | CCWGG | 1 cut(s) | 592 |
| BclI | TGATCA | 1 cut(s) | 348 |
| BcnI | CCSGG | 1 cut(s) | 439 |
| BcoDI | GTCTC | 1 cut(s) | 468 |
| BfaI | CTAG | 1 cut(s) | 281 |
| BfmI | CTRYAG | 1 cut(s) | 250 |
| BisI | GCNGC | 1 cut(s) | 253 |
| BlsI | GCNGC | 1 cut(s) | 254 |
| Bme1390I | CCNGG | 2 cut(s) | 439, 592 |
| Bme18I | GGWCC | 3 cut(s) | 118, 129, 594 |
| BmgBI | CACGTC | 2 cut(s) | 136, 556 |
| BmgT120I | GGNCC | 7 cut(s) | 118, 129, 493, 494, 505, 565, 594 |
| BmiI | GGNNCC | 2 cut(s) | 131, 495 |
| BmrFI | CCNGG | 2 cut(s) | 439, 592 |
| BoxI | GACNNNNGTC | 1 cut(s) | 134 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 134, 166, 183, 215 |
| BpuEI | CTTGAG | 1 cut(s) | 77 |
| BpuMI | CCSGG | 1 cut(s) | 439 |
| BsaBI | GATNNNNATC | 1 cut(s) | 65 |
| BsaJI | CCNNGG | 3 cut(s) | 438, 525, 590 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 226, 256 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 478, 502, 574 |
| Bse1I | ACTGG | 1 cut(s) | 365 |
| Bse3DI | GCAATG | 1 cut(s) | 362 |
| Bse8I | GATNNNNATC | 1 cut(s) | 65 |
| BseBI | CCWGG | 1 cut(s) | 592 |
| BseDI | CCNNGG | 3 cut(s) | 438, 525, 590 |
| BseJI | GATNNNNATC | 1 cut(s) | 65 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 478, 502, 574 |
| BseMI | GCAATG | 1 cut(s) | 362 |
| BseMII | CTCAG | 1 cut(s) | 302 |
| BseNI | ACTGG | 1 cut(s) | 365 |
| BseSI | GKGCMC | 1 cut(s) | 497 |
| BseXI | GCAGC | 1 cut(s) | 264 |
| Bsh1236I | CGCG | 2 cut(s) | 413, 425 |
| BshFI | GGCC | 4 cut(s) | 462, 495, 506, 566 |
| BsiHKAI | GWGCWC | 1 cut(s) | 201 |
| BsiSI | CCGG | 2 cut(s) | 163, 438 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 478, 502, 574 |
| BsmAI | GTCTC | 1 cut(s) | 468 |
| BsnI | GGCC | 4 cut(s) | 462, 495, 506, 566 |
| Bsp120I | GGGCCC | 1 cut(s) | 493 |
| Bsp1286I | GDGCHC | 2 cut(s) | 201, 497 |
| Bsp143I | GATC | 3 cut(s) | 5, 211, 348 |
| Bsp68I | TCGCGA | 1 cut(s) | 413 |
| BspANI | GGCC | 4 cut(s) | 462, 495, 506, 566 |
| BspCNI | CTCAG | 1 cut(s) | 301 |
| BspFNI | CGCG | 2 cut(s) | 413, 425 |
| BspLI | GGNNCC | 2 cut(s) | 131, 495 |
| BspMAI | CTGCAG | 1 cut(s) | 254 |
| BspQI | GCTCTTC | 1 cut(s) | 189 |
| BsrDI | GCAATG | 1 cut(s) | 362 |
| BsrI | ACTGG | 1 cut(s) | 365 |
| BssECI | CCNNGG | 3 cut(s) | 438, 525, 590 |
| BssMI | GATC | 3 cut(s) | 5, 211, 348 |
| BssT1I | CCWWGG | 1 cut(s) | 525 |
| Bst2UI | CCWGG | 1 cut(s) | 592 |
| Bst4CI | ACNGT | 2 cut(s) | 303, 517 |
| Bst6I | CTCTTC | 4 cut(s) | 108, 119, 189, 444 |
| BstDEI | CTNAG | 1 cut(s) | 288 |
| BstEII | GGTNACC | 1 cut(s) | 297 |
| BstFNI | CGCG | 2 cut(s) | 413, 425 |
| BstHHI | GCGC | 1 cut(s) | 427 |
| BstKTI | GATC | 3 cut(s) | 8, 214, 351 |
| BstMAI | GTCTC | 1 cut(s) | 468 |
| BstMBI | GATC | 3 cut(s) | 5, 211, 348 |
| BstNI | CCWGG | 1 cut(s) | 592 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 134 |
| BstPI | GGTNACC | 1 cut(s) | 297 |
| BstSCI | CCNGG | 2 cut(s) | 437, 590 |
| BstSFI | CTRYAG | 1 cut(s) | 250 |
| BstSLI | GKGCMC | 1 cut(s) | 497 |
| BstUI | CGCG | 2 cut(s) | 413, 425 |
| BstV1I | GCAGC | 1 cut(s) | 264 |
| BstX2I | RGATCY | 1 cut(s) | 5 |
| BstYI | RGATCY | 1 cut(s) | 5 |
| BsuRI | GGCC | 4 cut(s) | 462, 495, 506, 566 |
| BtgZI | GCGATG | 1 cut(s) | 394 |
| BtrI | CACGTC | 2 cut(s) | 136, 556 |
| BtuMI | TCGCGA | 1 cut(s) | 413 |
| CaiI | CAGNNNCTG | 1 cut(s) | 209 |
| CfoI | GCGC | 1 cut(s) | 427 |
| Cfr13I | GGNCC | 7 cut(s) | 118, 129, 493, 494, 505, 565, 594 |
| CviAII | CATG | 2 cut(s) | 478, 571 |
| CviJI | RGCY | 8 cut(s) | 56, 199, 209, 462, 495, 506, 566, 604 |
| CviKI_1 | RGCY | 8 cut(s) | 56, 199, 209, 462, 495, 506, 566, 604 |
| DdeI | CTNAG | 1 cut(s) | 288 |
| DpnI | GATC | 3 cut(s) | 7, 213, 350 |
| DpnII | GATC | 3 cut(s) | 5, 211, 348 |
| DraIII | CACNNNGTG | 1 cut(s) | 574 |
| Eam1104I | CTCTTC | 4 cut(s) | 108, 119, 189, 444 |
| EarI | CTCTTC | 4 cut(s) | 108, 119, 189, 444 |
| Ecl136II | GAGCTC | 1 cut(s) | 199 |
| Eco130I | CCWWGG | 1 cut(s) | 525 |
| Eco147I | AGGCCT | 1 cut(s) | 462 |
| Eco24I | GRGCYC | 2 cut(s) | 201, 497 |
| Eco47I | GGWCC | 3 cut(s) | 118, 129, 594 |
| Eco53kI | GAGCTC | 1 cut(s) | 199 |
| Eco57I | CTGAAG | 4 cut(s) | 57, 132, 143, 410 |
| Eco91I | GGTNACC | 1 cut(s) | 297 |
| EcoICRI | GAGCTC | 1 cut(s) | 199 |
| EcoO109I | RGGNCCY | 2 cut(s) | 118, 129 |
| EcoO65I | GGTNACC | 1 cut(s) | 297 |
| EcoRII | CCWGG | 1 cut(s) | 590 |
| EcoT14I | CCWWGG | 1 cut(s) | 525 |
| EcoT38I | GRGCYC | 2 cut(s) | 201, 497 |
| ErhI | CCWWGG | 1 cut(s) | 525 |
| FaeI | CATG | 2 cut(s) | 481, 574 |
| FaiI | YATR | 9 cut(s) | 44, 59, 78, 80, 147, 479, 510, 512, 572 |
| FatI | CATG | 2 cut(s) | 477, 570 |
| FauNDI | CATATG | 2 cut(s) | 78, 510 |
| FbaI | TGATCA | 1 cut(s) | 348 |
| Fnu4HI | GCNGC | 1 cut(s) | 253 |
| FriOI | GRGCYC | 2 cut(s) | 201, 497 |
| Fsp4HI | GCNGC | 1 cut(s) | 253 |
| FspBI | CTAG | 1 cut(s) | 281 |
| GlaI | GCGC | 1 cut(s) | 426 |
| GluI | GCNGC | 1 cut(s) | 253 |
| HaeIII | GGCC | 4 cut(s) | 462, 495, 506, 566 |
| HapII | CCGG | 2 cut(s) | 163, 438 |
| HhaI | GCGC | 1 cut(s) | 427 |
| Hin1II | CATG | 2 cut(s) | 481, 574 |
| Hin6I | GCGC | 1 cut(s) | 425 |
| HinP1I | GCGC | 1 cut(s) | 425 |
| HinfI | GANTC | 2 cut(s) | 166, 284 |
| HpaII | CCGG | 2 cut(s) | 163, 438 |
| HphI | GGTGA | 2 cut(s) | 22, 291 |
| Hpy166II | GTNNAC | 1 cut(s) | 559 |
| Hpy188I | TCNGA | 4 cut(s) | 112, 154, 291, 473 |
| Hpy188III | TCNNGA | 2 cut(s) | 70, 412 |
| Hpy8I | GTNNAC | 1 cut(s) | 559 |
| HpyAV | CCTTC | 5 cut(s) | 40, 247, 255, 449, 476 |
| HpyCH4III | ACNGT | 2 cut(s) | 303, 517 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 468, 555 |
| HpyCH4V | TGCA | 1 cut(s) | 252 |
| HpyF3I | CTNAG | 1 cut(s) | 288 |
| HpySE526I | ACGT | 3 cut(s) | 135, 468, 555 |
| Hsp92II | CATG | 2 cut(s) | 481, 574 |
| HspAI | GCGC | 1 cut(s) | 425 |
| Ksp22I | TGATCA | 1 cut(s) | 348 |
| Kzo9I | GATC | 3 cut(s) | 5, 211, 348 |
| LguI | GCTCTTC | 1 cut(s) | 189 |
| Lsp1109I | GCAGC | 1 cut(s) | 264 |
| MaeI | CTAG | 1 cut(s) | 281 |
| MaeII | ACGT | 3 cut(s) | 135, 468, 555 |
| MaeIII | GTNAC | 3 cut(s) | 171, 297, 517 |
| MalI | GATC | 3 cut(s) | 7, 213, 350 |
| MboI | GATC | 3 cut(s) | 5, 211, 348 |
| MboII | GAAGA | 5 cut(s) | 50, 125, 136, 206, 461 |
| MfeI | CAATTG | 1 cut(s) | 395 |
| MflI | RGATCY | 1 cut(s) | 5 |
| MhlI | GDGCHC | 2 cut(s) | 201, 497 |
| MluCI | AATT | 3 cut(s) | 182, 292, 395 |
| MnlI | CCTC | 9 cut(s) | 76, 109, 120, 252, 335, 445, 452, 532, 535 |
| MseI | TTAA | 1 cut(s) | 15 |
| MslI | CAYNNNNRTG | 1 cut(s) | 138 |
| MspI | CCGG | 2 cut(s) | 163, 438 |
| MspR9I | CCNGG | 2 cut(s) | 439, 592 |
| MunI | CAATTG | 1 cut(s) | 395 |
| MvaI | CCWGG | 1 cut(s) | 592 |
| MvnI | CGCG | 2 cut(s) | 413, 425 |
| NciI | CCSGG | 1 cut(s) | 439 |
| NdeI | CATATG | 2 cut(s) | 78, 510 |
| NdeII | GATC | 3 cut(s) | 5, 211, 348 |
| NlaIII | CATG | 2 cut(s) | 481, 574 |
| NlaIV | GGNNCC | 2 cut(s) | 131, 495 |
| NmuCI | GTSAC | 3 cut(s) | 171, 297, 517 |
| NruI | TCGCGA | 1 cut(s) | 413 |
| PceI | AGGCCT | 1 cut(s) | 462 |
| PciSI | GCTCTTC | 1 cut(s) | 189 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 552 |
| PfeI | GAWTC | 2 cut(s) | 166, 284 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 574 |
| PkrI | GCNGC | 1 cut(s) | 254 |
| PpuMI | RGGWCCY | 2 cut(s) | 118, 129 |
| PshAI | GACNNNNGTC | 1 cut(s) | 134 |
| PshBI | ATTAAT | 1 cut(s) | 15 |
| Psp124BI | GAGCTC | 1 cut(s) | 201 |
| Psp5II | RGGWCCY | 2 cut(s) | 118, 129 |
| Psp6I | CCWGG | 1 cut(s) | 590 |
| PspEI | GGTNACC | 1 cut(s) | 297 |
| PspGI | CCWGG | 1 cut(s) | 590 |
| PspN4I | GGNNCC | 2 cut(s) | 131, 495 |
| PspOMI | GGGCCC | 1 cut(s) | 493 |
| PspPI | GGNCC | 7 cut(s) | 118, 129, 493, 494, 505, 565, 594 |
| PspPPI | RGGWCCY | 2 cut(s) | 118, 129 |
| PstI | CTGCAG | 1 cut(s) | 254 |
| PstNI | CAGNNNCTG | 1 cut(s) | 209 |
| PsuI | RGATCY | 1 cut(s) | 5 |
| RruI | TCGCGA | 1 cut(s) | 413 |
| RseI | CAYNNNNRTG | 1 cut(s) | 138 |
| SacI | GAGCTC | 1 cut(s) | 201 |
| SapI | GCTCTTC | 1 cut(s) | 189 |
| SaqAI | TTAA | 1 cut(s) | 15 |
| SatI | GCNGC | 1 cut(s) | 253 |
| Sau3AI | GATC | 3 cut(s) | 5, 211, 348 |
| Sau96I | GGNCC | 7 cut(s) | 118, 129, 493, 494, 505, 565, 594 |
| ScrFI | CCNGG | 2 cut(s) | 439, 592 |
| SduI | GDGCHC | 2 cut(s) | 201, 497 |
| SfcI | CTRYAG | 1 cut(s) | 250 |
| SinI | GGWCC | 3 cut(s) | 118, 129, 594 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 138 |
| SmlI | CTYRAG | 1 cut(s) | 92 |
| SmoI | CTYRAG | 1 cut(s) | 92 |
| Sse9I | AATT | 3 cut(s) | 182, 292, 395 |
| SseBI | AGGCCT | 1 cut(s) | 462 |
| SspI | AATATT | 1 cut(s) | 104 |
| SspMI | CTAG | 1 cut(s) | 281 |
| SstI | GAGCTC | 1 cut(s) | 201 |
| StuI | AGGCCT | 1 cut(s) | 462 |
| StyD4I | CCNGG | 2 cut(s) | 437, 590 |
| StyI | CCWWGG | 1 cut(s) | 525 |
| TaaI | ACNGT | 2 cut(s) | 303, 517 |
| TaiI | ACGT | 3 cut(s) | 138, 471, 558 |
| TaqI | TCGA | 1 cut(s) | 546 |
| TaqII | GACCGA | 1 cut(s) | 159 |
| TasI | AATT | 3 cut(s) | 182, 292, 395 |
| TfiI | GAWTC | 2 cut(s) | 166, 284 |
| Tru1I | TTAA | 1 cut(s) | 15 |
| Tru9I | TTAA | 1 cut(s) | 15 |
| TseFI | GTSAC | 3 cut(s) | 171, 297, 517 |
| TseI | GCWGC | 1 cut(s) | 252 |
| Tsp45I | GTSAC | 3 cut(s) | 171, 297, 517 |
| TspDTI | ATGAA | 2 cut(s) | 55, 59 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 574 |
| VpaK11BI | GGWCC | 3 cut(s) | 118, 129, 594 |
| VspI | ATTAAT | 1 cut(s) | 15 |
| XapI | RAATTY | 1 cut(s) | 182 |
| XspI | CTAG | 1 cut(s) | 281 |